Wall clock time and date at job start Wed Apr 1 2020 05:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50700 * 120.00154 * 2 1 4 4 C 1.50705 * 119.99767 * 179.97438 * 2 1 3 5 5 N 1.46499 * 109.46570 * 96.01705 * 4 2 1 6 6 C 1.36741 * 127.13924 * 264.01652 * 5 4 2 7 7 C 1.50707 * 126.34126 * 0.02853 * 6 5 4 8 8 H 1.09001 * 109.47118 * 353.57312 * 7 6 5 9 9 O 1.42898 * 109.46737 * 233.57432 * 7 6 5 10 10 C 1.52994 * 109.47089 * 113.57844 * 7 6 5 11 11 C 1.53000 * 117.49961 * 245.70266 * 10 7 6 12 12 C 1.52994 * 117.49966 * 177.04312 * 10 7 6 13 13 N 1.30287 * 107.30698 * 180.02562 * 6 5 4 14 14 N 1.28522 * 110.05710 * 0.02562 * 13 6 5 15 15 C 1.31219 * 109.85836 * 359.97438 * 14 13 6 16 16 N 1.38586 * 126.47023 * 180.02562 * 15 14 13 17 17 C 1.46852 * 110.99404 * 267.28866 * 16 15 14 18 18 C 1.53045 * 109.51903 * 185.84096 * 17 16 15 19 19 C 1.53114 * 109.27856 * 300.82088 * 18 17 16 20 20 C 1.53120 * 109.16177 * 57.65670 * 19 18 17 21 21 H 1.08999 * 109.50529 * 62.28582 * 20 19 18 22 22 C 1.50705 * 109.50405 * 182.40581 * 20 19 18 23 23 H 1.07991 * 119.99876 * 119.80091 * 22 20 19 24 24 C 1.37871 * 119.99632 * 299.79915 * 22 20 19 25 25 N 1.31517 * 120.00056 * 180.02562 * 24 22 20 26 26 Si 1.86799 * 120.00361 * 0.02562 * 24 22 20 27 27 H 1.48503 * 109.47170 * 90.00036 * 26 24 22 28 28 H 1.48500 * 109.47226 * 209.99776 * 26 24 22 29 29 H 1.48502 * 109.47339 * 330.00030 * 26 24 22 30 30 C 1.46844 * 111.00375 * 31.49568 * 16 15 14 31 31 H 1.07999 * 119.99969 * 359.51025 * 1 2 3 32 32 H 1.08001 * 119.99836 * 179.50458 * 1 2 3 33 33 H 1.09008 * 109.46671 * 269.98989 * 3 2 1 34 34 H 1.08996 * 109.47464 * 29.98795 * 3 2 1 35 35 H 1.08999 * 109.47538 * 149.99548 * 3 2 1 36 36 H 1.08992 * 109.47238 * 336.01488 * 4 2 1 37 37 H 1.08999 * 109.47257 * 216.00965 * 4 2 1 38 38 H 0.96700 * 114.00746 * 300.00375 * 9 7 6 39 39 H 1.09001 * 115.55131 * 31.37498 * 10 7 6 40 40 H 1.08997 * 117.49804 * 0.02562 * 11 10 7 41 41 H 1.08995 * 117.49927 * 145.01693 * 11 10 7 42 42 H 1.08998 * 117.50236 * 214.98118 * 12 10 7 43 43 H 1.09003 * 117.49828 * 359.97438 * 12 10 7 44 44 H 1.08996 * 109.46191 * 305.85402 * 17 16 15 45 45 H 1.08994 * 109.46271 * 65.83204 * 17 16 15 46 46 H 1.08999 * 109.50024 * 180.87903 * 18 17 16 47 47 H 1.08998 * 109.53316 * 60.77905 * 18 17 16 48 48 H 1.09003 * 109.52403 * 297.75267 * 19 18 17 49 49 H 1.08996 * 109.52245 * 177.55943 * 19 18 17 50 50 H 0.97000 * 120.00093 * 180.02562 * 25 24 22 51 51 H 1.08999 * 109.46783 * 294.18204 * 30 16 15 52 52 H 1.09003 * 109.46138 * 54.16026 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3052 0.0006 5 7 2.4330 -1.6562 -1.3729 6 6 1.7576 -2.4879 -2.2226 7 6 0.4780 -3.2249 -1.9214 8 1 0.2185 -3.0883 -0.8716 9 8 0.6554 -4.6169 -2.1911 10 6 -0.6467 -2.6744 -2.8005 11 6 -1.7981 -1.9480 -2.1023 12 6 -2.0187 -3.3427 -2.6932 13 7 2.4253 -2.5249 -3.3408 14 7 3.4688 -1.7795 -3.2559 15 6 3.5230 -1.2218 -2.0694 16 7 4.5022 -0.3552 -1.6104 17 6 5.5667 -1.0867 -0.9117 18 6 6.5515 -0.0908 -0.2948 19 6 7.1484 0.7820 -1.4023 20 6 6.0155 1.4952 -2.1456 21 1 5.4842 2.1512 -1.4560 22 6 6.5900 2.3106 -3.2753 23 1 6.2937 2.1065 -4.2935 24 6 7.4938 3.3171 -3.0088 25 7 7.9948 4.0290 -3.9946 26 14 8.0067 3.6696 -1.2475 27 1 9.1965 2.8496 -0.9049 28 1 8.3414 5.1097 -1.1082 29 1 6.8902 3.3298 -0.3293 30 6 5.0463 0.4534 -2.7088 31 1 -0.5400 0.9353 0.0080 32 1 -0.5400 -0.9353 -0.0081 33 1 2.2453 1.6196 -1.0278 34 1 1.4745 2.0648 0.5136 35 1 3.0159 1.1748 0.5139 36 1 1.4320 -2.0890 0.4186 37 1 2.9651 -1.2040 0.6047 38 1 0.8885 -4.8133 -3.1088 39 1 -0.3408 -2.3076 -3.7804 40 1 -1.7541 -1.8620 -1.0166 41 1 -2.2498 -1.1037 -2.6228 42 1 -2.6157 -3.4153 -3.6023 43 1 -2.1201 -4.1749 -1.9966 44 1 5.1292 -1.7001 -0.1241 45 1 6.0931 -1.7264 -1.6200 46 1 7.3500 -0.6342 0.2105 47 1 6.0292 0.5404 0.4242 48 1 7.7041 0.1555 -2.1001 49 1 7.8176 1.5214 -0.9625 50 1 8.6310 4.7369 -3.8071 51 1 5.5750 -0.1936 -3.4088 52 1 4.2308 0.9586 -3.2264 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001344027349.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:47 Heat of formation + Delta-G solvation = 84.376545 kcal Electronic energy + Delta-G solvation = -32362.398065 eV Core-core repulsion = 28364.928789 eV Total energy + Delta-G solvation = -3997.469276 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.97445 -38.93307 -38.41613 -36.99646 -35.78487 -34.09685 -33.44325 -32.24416 -30.47203 -30.05884 -27.61418 -27.17212 -26.69550 -25.11658 -24.25871 -22.74384 -22.05587 -21.69222 -21.03754 -20.69020 -19.02101 -18.90365 -17.67030 -17.05173 -16.88644 -16.37425 -16.08663 -15.94959 -15.02249 -14.92326 -14.64622 -14.44791 -14.28840 -14.16811 -13.79753 -13.48015 -13.30369 -13.11535 -12.95069 -12.59490 -12.42481 -12.34396 -12.10993 -11.95886 -11.77721 -11.59468 -11.35535 -11.31368 -11.14529 -10.95389 -10.73459 -10.65287 -10.55063 -10.41038 -10.22657 -10.14550 -10.04595 -9.82071 -9.44854 -9.29535 -9.26045 -8.96626 -8.55999 -8.17860 -6.09486 -4.09549 1.55018 1.79342 2.50114 2.88150 3.24040 3.34475 3.35896 3.37173 3.87821 4.01546 4.07409 4.28305 4.33866 4.37886 4.41531 4.51935 4.69380 4.80713 4.95710 5.00121 5.05044 5.09933 5.20588 5.27119 5.30993 5.43623 5.48099 5.55216 5.59461 5.64837 5.66273 5.76724 5.78107 5.80672 5.89981 5.95780 6.02152 6.05687 6.11416 6.17193 6.30795 6.34778 6.51237 6.53657 6.56949 6.67744 6.75118 7.02677 7.12554 7.23478 7.48017 7.53717 7.74180 8.48402 8.83201 8.94841 9.51686 11.03700 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016839 B = 0.003131 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.368955 B = 8939.983075 C = 9261.106130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.137 4.137 3 C -0.114 4.114 4 C 0.146 3.854 5 N -0.460 5.460 6 C 0.134 3.866 7 C 0.238 3.762 8 H 0.107 0.893 9 O -0.544 6.544 10 C -0.187 4.187 11 C -0.172 4.172 12 C -0.161 4.161 13 N -0.277 5.277 14 N -0.312 5.312 15 C 0.376 3.624 16 N -0.463 5.463 17 C 0.070 3.930 18 C -0.117 4.117 19 C -0.126 4.126 20 C 0.024 3.976 21 H 0.036 0.964 22 C -0.514 4.514 23 H 0.075 0.925 24 C 0.072 3.928 25 N -0.899 5.899 26 Si 0.887 3.113 27 H -0.279 1.279 28 H -0.298 1.298 29 H -0.264 1.264 30 C 0.093 3.907 31 H 0.106 0.894 32 H 0.097 0.903 33 H 0.074 0.926 34 H 0.061 0.939 35 H 0.071 0.929 36 H 0.094 0.906 37 H 0.104 0.896 38 H 0.389 0.611 39 H 0.115 0.885 40 H 0.097 0.903 41 H 0.098 0.902 42 H 0.098 0.902 43 H 0.100 0.900 44 H 0.062 0.938 45 H 0.047 0.953 46 H 0.062 0.938 47 H 0.066 0.934 48 H 0.061 0.939 49 H 0.051 0.949 50 H 0.264 0.736 51 H 0.051 0.949 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.079 -13.284 11.452 25.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.138 4.138 3 C -0.170 4.170 4 C 0.024 3.976 5 N -0.154 5.154 6 C -0.134 4.134 7 C 0.176 3.824 8 H 0.125 0.875 9 O -0.349 6.349 10 C -0.206 4.206 11 C -0.209 4.209 12 C -0.198 4.198 13 N -0.118 5.118 14 N -0.156 5.156 15 C 0.020 3.980 16 N -0.189 5.189 17 C -0.057 4.057 18 C -0.155 4.155 19 C -0.164 4.164 20 C 0.004 3.996 21 H 0.054 0.946 22 C -0.553 4.553 23 H 0.093 0.907 24 C -0.130 4.130 25 N -0.537 5.537 26 Si 0.717 3.283 27 H -0.206 1.206 28 H -0.226 1.226 29 H -0.189 1.189 30 C -0.032 4.032 31 H 0.124 0.876 32 H 0.115 0.885 33 H 0.093 0.907 34 H 0.080 0.920 35 H 0.090 0.910 36 H 0.112 0.888 37 H 0.122 0.878 38 H 0.239 0.761 39 H 0.134 0.866 40 H 0.115 0.885 41 H 0.117 0.883 42 H 0.116 0.884 43 H 0.118 0.882 44 H 0.080 0.920 45 H 0.065 0.935 46 H 0.081 0.919 47 H 0.084 0.916 48 H 0.080 0.920 49 H 0.069 0.931 50 H 0.074 0.926 51 H 0.069 0.931 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -17.905 -13.252 10.964 24.827 hybrid contribution 0.631 0.404 1.080 1.314 sum -17.274 -12.847 12.043 24.668 Atomic orbital electron populations 1.23883 0.95009 1.02273 1.00008 1.21894 0.95404 0.95624 1.00863 1.20810 1.00018 0.92905 1.03285 1.20880 1.01388 0.95409 0.79939 1.46286 1.19008 1.36391 1.13708 1.25334 1.00091 0.99172 0.88774 1.19406 0.84582 0.79795 0.98594 0.87547 1.86543 1.92054 1.21135 1.35167 1.22932 0.89757 1.05953 1.01961 1.23069 1.01480 0.96122 1.00211 1.22907 0.97336 0.96097 1.03429 1.73868 1.02635 1.16735 1.18567 1.74734 1.14546 1.10038 1.16307 1.22758 0.90564 0.96023 0.88700 1.58932 1.11287 1.18923 1.29713 1.22109 0.91148 0.95411 0.97004 1.21675 0.97201 0.97626 0.99015 1.22089 0.99717 0.98164 0.96398 1.19194 0.91436 0.92673 0.96278 0.94588 1.20926 1.25158 1.15406 0.93763 0.90674 1.24966 0.95676 0.95497 0.96817 1.69896 1.30663 1.21729 1.31412 0.86852 0.79275 0.76173 0.85990 1.20635 1.22581 1.18868 1.22156 0.98045 0.93946 0.89080 0.87586 0.88458 0.90721 0.92023 0.90976 0.88780 0.87816 0.76133 0.86645 0.88515 0.88339 0.88404 0.88160 0.91986 0.93485 0.91918 0.91557 0.91993 0.93110 0.92608 0.93066 0.91050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.43 13.88 29.01 0.40 -1.03 16 2 C -0.14 -1.37 5.63 -101.06 -0.57 -1.94 16 3 C -0.11 -1.31 10.03 36.01 0.36 -0.95 16 4 C 0.15 1.47 6.19 -5.19 -0.03 1.44 16 5 N -0.46 -6.20 2.79 -115.37 -0.32 -6.53 16 6 C 0.13 1.82 6.88 -154.02 -1.06 0.76 16 7 C 0.24 2.37 3.63 -27.88 -0.10 2.27 16 8 H 0.11 0.90 6.52 -51.93 -0.34 0.56 16 9 O -0.54 -5.57 13.18 -35.23 -0.46 -6.04 16 10 C -0.19 -1.67 5.38 -90.63 -0.49 -2.16 16 11 C -0.17 -1.23 9.98 -26.70 -0.27 -1.49 16 12 C -0.16 -1.12 10.11 -26.70 -0.27 -1.39 16 13 N -0.28 -4.67 12.18 32.99 0.40 -4.27 16 14 N -0.31 -5.95 11.61 30.32 0.35 -5.60 16 15 C 0.38 6.31 6.77 -318.87 -2.16 4.15 16 16 N -0.46 -7.82 4.67 -174.54 -0.82 -8.63 16 17 C 0.07 1.08 5.40 -3.83 -0.02 1.06 16 18 C -0.12 -1.85 6.09 -26.65 -0.16 -2.02 16 19 C -0.13 -2.56 4.74 -26.61 -0.13 -2.68 16 20 C 0.02 0.53 1.85 -91.69 -0.17 0.36 16 21 H 0.04 0.83 7.20 -51.93 -0.37 0.46 16 22 C -0.51 -14.08 9.14 -34.44 -0.31 -14.40 16 23 H 0.08 2.26 7.99 -52.49 -0.42 1.84 16 24 C 0.07 2.04 5.45 -17.82 -0.10 1.94 16 25 N -0.90 -27.20 13.96 55.43 0.77 -26.43 16 26 Si 0.89 21.30 24.36 -169.99 -4.14 17.16 16 27 H -0.28 -6.54 6.89 56.52 0.39 -6.15 16 28 H -0.30 -7.26 7.11 56.52 0.40 -6.86 16 29 H -0.26 -5.97 6.53 56.52 0.37 -5.60 16 30 C 0.09 1.90 4.26 -3.83 -0.02 1.89 16 31 H 0.11 0.81 8.04 -52.49 -0.42 0.39 16 32 H 0.10 0.65 5.70 -52.49 -0.30 0.35 16 33 H 0.07 1.06 8.14 -51.92 -0.42 0.64 16 34 H 0.06 0.61 8.06 -51.93 -0.42 0.19 16 35 H 0.07 0.87 8.09 -51.93 -0.42 0.45 16 36 H 0.09 0.71 6.75 -51.93 -0.35 0.36 16 37 H 0.10 1.01 7.87 -51.93 -0.41 0.60 16 38 H 0.39 3.41 9.04 45.56 0.41 3.82 16 39 H 0.12 1.25 8.09 -51.93 -0.42 0.83 16 40 H 0.10 0.58 6.02 -51.93 -0.31 0.27 16 41 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 44 H 0.06 0.81 7.86 -51.93 -0.41 0.40 16 45 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 47 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 48 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 49 H 0.05 1.09 3.37 -51.93 -0.17 0.92 16 50 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 51 H 0.05 1.12 8.06 -51.93 -0.42 0.71 16 52 H 0.07 1.54 8.10 -51.93 -0.42 1.12 16 LS Contribution 408.87 15.07 6.16 6.16 Total: -1.00 -32.07 408.87 -10.90 -42.96 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: -7.76 Total: 5.39 kcal Atomic # 6 Polarization: -9.10 SS G_CDS: -5.09 Total: -14.19 kcal Atomic # 7 Polarization: -51.84 SS G_CDS: 0.39 Total: -51.45 kcal Atomic # 8 Polarization: -5.57 SS G_CDS: -0.46 Total: -6.04 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.14 Total: 17.16 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -32.07 -10.90 -42.96 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344027349.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.340 kcal (2) G-P(sol) polarization free energy of solvation -32.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds