Wall clock time and date at job start Wed Apr 1 2020 05:15:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50700 * 120.00154 * 2 1 4 4 C 1.50705 * 119.99767 * 179.97438 * 2 1 3 5 5 N 1.46499 * 109.46570 * 96.01705 * 4 2 1 6 6 C 1.36741 * 127.13924 * 264.01652 * 5 4 2 7 7 C 1.50707 * 126.34126 * 0.02853 * 6 5 4 8 8 H 1.09001 * 109.47118 * 353.57312 * 7 6 5 9 9 O 1.42898 * 109.46737 * 233.57432 * 7 6 5 10 10 C 1.52994 * 109.47089 * 113.57844 * 7 6 5 11 11 C 1.53000 * 117.49961 * 245.70266 * 10 7 6 12 12 C 1.52994 * 117.49966 * 177.04312 * 10 7 6 13 13 N 1.30287 * 107.30698 * 180.02562 * 6 5 4 14 14 N 1.28522 * 110.05710 * 0.02562 * 13 6 5 15 15 C 1.31219 * 109.85836 * 359.97438 * 14 13 6 16 16 N 1.38586 * 126.47023 * 180.02562 * 15 14 13 17 17 C 1.46852 * 110.99404 * 267.28866 * 16 15 14 18 18 C 1.53045 * 109.51903 * 185.84096 * 17 16 15 19 19 C 1.53114 * 109.27856 * 300.82088 * 18 17 16 20 20 C 1.53120 * 109.16177 * 57.65670 * 19 18 17 21 21 H 1.08999 * 109.50529 * 62.28582 * 20 19 18 22 22 C 1.50705 * 109.50405 * 182.40581 * 20 19 18 23 23 H 1.07991 * 119.99876 * 119.80091 * 22 20 19 24 24 C 1.37871 * 119.99632 * 299.79915 * 22 20 19 25 25 N 1.31517 * 120.00056 * 180.02562 * 24 22 20 26 26 Si 1.86799 * 120.00361 * 0.02562 * 24 22 20 27 27 H 1.48503 * 109.47170 * 90.00036 * 26 24 22 28 28 H 1.48500 * 109.47226 * 209.99776 * 26 24 22 29 29 H 1.48502 * 109.47339 * 330.00030 * 26 24 22 30 30 C 1.46844 * 111.00375 * 31.49568 * 16 15 14 31 31 H 1.07999 * 119.99969 * 359.51025 * 1 2 3 32 32 H 1.08001 * 119.99836 * 179.50458 * 1 2 3 33 33 H 1.09008 * 109.46671 * 269.98989 * 3 2 1 34 34 H 1.08996 * 109.47464 * 29.98795 * 3 2 1 35 35 H 1.08999 * 109.47538 * 149.99548 * 3 2 1 36 36 H 1.08992 * 109.47238 * 336.01488 * 4 2 1 37 37 H 1.08999 * 109.47257 * 216.00965 * 4 2 1 38 38 H 0.96700 * 114.00746 * 300.00375 * 9 7 6 39 39 H 1.09001 * 115.55131 * 31.37498 * 10 7 6 40 40 H 1.08997 * 117.49804 * 0.02562 * 11 10 7 41 41 H 1.08995 * 117.49927 * 145.01693 * 11 10 7 42 42 H 1.08998 * 117.50236 * 214.98118 * 12 10 7 43 43 H 1.09003 * 117.49828 * 359.97438 * 12 10 7 44 44 H 1.08996 * 109.46191 * 305.85402 * 17 16 15 45 45 H 1.08994 * 109.46271 * 65.83204 * 17 16 15 46 46 H 1.08999 * 109.50024 * 180.87903 * 18 17 16 47 47 H 1.08998 * 109.53316 * 60.77905 * 18 17 16 48 48 H 1.09003 * 109.52403 * 297.75267 * 19 18 17 49 49 H 1.08996 * 109.52245 * 177.55943 * 19 18 17 50 50 H 0.97000 * 120.00093 * 180.02562 * 25 24 22 51 51 H 1.08999 * 109.46783 * 294.18204 * 30 16 15 52 52 H 1.09003 * 109.46138 * 54.16026 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3052 0.0006 5 7 2.4330 -1.6562 -1.3729 6 6 1.7576 -2.4879 -2.2226 7 6 0.4780 -3.2249 -1.9214 8 1 0.2185 -3.0883 -0.8716 9 8 0.6554 -4.6169 -2.1911 10 6 -0.6467 -2.6744 -2.8005 11 6 -1.7981 -1.9480 -2.1023 12 6 -2.0187 -3.3427 -2.6932 13 7 2.4253 -2.5249 -3.3408 14 7 3.4688 -1.7795 -3.2559 15 6 3.5230 -1.2218 -2.0694 16 7 4.5022 -0.3552 -1.6104 17 6 5.5667 -1.0867 -0.9117 18 6 6.5515 -0.0908 -0.2948 19 6 7.1484 0.7820 -1.4023 20 6 6.0155 1.4952 -2.1456 21 1 5.4842 2.1512 -1.4560 22 6 6.5900 2.3106 -3.2753 23 1 6.2937 2.1065 -4.2935 24 6 7.4938 3.3171 -3.0088 25 7 7.9948 4.0290 -3.9946 26 14 8.0067 3.6696 -1.2475 27 1 9.1965 2.8496 -0.9049 28 1 8.3414 5.1097 -1.1082 29 1 6.8902 3.3298 -0.3293 30 6 5.0463 0.4534 -2.7088 31 1 -0.5400 0.9353 0.0080 32 1 -0.5400 -0.9353 -0.0081 33 1 2.2453 1.6196 -1.0278 34 1 1.4745 2.0648 0.5136 35 1 3.0159 1.1748 0.5139 36 1 1.4320 -2.0890 0.4186 37 1 2.9651 -1.2040 0.6047 38 1 0.8885 -4.8133 -3.1088 39 1 -0.3408 -2.3076 -3.7804 40 1 -1.7541 -1.8620 -1.0166 41 1 -2.2498 -1.1037 -2.6228 42 1 -2.6157 -3.4153 -3.6023 43 1 -2.1201 -4.1749 -1.9966 44 1 5.1292 -1.7001 -0.1241 45 1 6.0931 -1.7264 -1.6200 46 1 7.3500 -0.6342 0.2105 47 1 6.0292 0.5404 0.4242 48 1 7.7041 0.1555 -2.1001 49 1 7.8176 1.5214 -0.9625 50 1 8.6310 4.7369 -3.8071 51 1 5.5750 -0.1936 -3.4088 52 1 4.2308 0.9586 -3.2264 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001344027349.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:46 Heat of formation + Delta-G solvation = 64.225658 kcal Electronic energy + Delta-G solvation = -32363.271873 eV Core-core repulsion = 28364.928789 eV Total energy + Delta-G solvation = -3998.343084 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -44.14355 -40.20016 -39.35342 -37.84527 -36.48269 -35.77673 -34.48124 -34.01430 -32.18991 -31.17747 -28.50510 -28.07494 -27.57729 -27.05809 -25.70491 -23.31478 -23.23976 -22.91037 -22.28770 -21.65883 -20.48580 -19.86483 -19.02504 -18.44921 -17.78644 -17.66142 -17.28422 -16.87059 -16.48385 -15.83918 -15.76398 -15.68612 -15.40226 -15.22809 -15.01759 -14.84348 -14.68765 -14.24894 -14.17465 -13.99373 -13.87745 -13.22275 -12.97696 -12.93990 -12.91527 -12.77569 -12.67214 -12.46233 -12.32809 -12.10301 -12.04908 -11.82213 -11.77884 -11.66496 -11.46956 -11.26332 -11.16823 -11.15712 -11.06797 -10.97870 -10.66427 -10.45530 -10.18992 -9.54429 -8.30061 -6.35954 0.55507 0.83534 1.32062 1.38244 1.49684 1.53932 1.66859 2.33582 2.64285 2.75351 3.05148 3.12493 3.35452 3.49902 3.64311 3.69002 3.74980 3.85496 3.94309 3.99051 4.05032 4.11234 4.21887 4.26283 4.33127 4.36553 4.37342 4.44641 4.61902 4.67000 4.70595 4.77575 4.79986 4.83791 4.87189 4.90291 4.91122 4.97316 5.03244 5.06234 5.13040 5.17117 5.22860 5.28966 5.35294 5.48594 5.57372 5.58424 5.65375 5.80693 5.81434 6.20216 6.29000 6.48862 6.70606 7.29317 7.62586 8.87282 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016839 B = 0.003131 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.368955 B = 8939.983075 C = 9261.106130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.162 4.162 3 C -0.110 4.110 4 C 0.138 3.862 5 N -0.450 5.450 6 C 0.154 3.846 7 C 0.244 3.756 8 H 0.135 0.865 9 O -0.548 6.548 10 C -0.205 4.205 11 C -0.163 4.163 12 C -0.147 4.147 13 N -0.313 5.313 14 N -0.361 5.361 15 C 0.362 3.638 16 N -0.449 5.449 17 C 0.068 3.932 18 C -0.107 4.107 19 C -0.126 4.126 20 C 0.030 3.970 21 H 0.038 0.962 22 C -0.524 4.524 23 H 0.024 0.976 24 C 0.012 3.988 25 N -0.952 5.952 26 Si 0.955 3.045 27 H -0.263 1.263 28 H -0.301 1.301 29 H -0.236 1.236 30 C 0.114 3.886 31 H 0.112 0.888 32 H 0.121 0.879 33 H 0.036 0.964 34 H 0.074 0.926 35 H 0.065 0.935 36 H 0.129 0.871 37 H 0.110 0.890 38 H 0.394 0.606 39 H 0.088 0.912 40 H 0.117 0.883 41 H 0.098 0.902 42 H 0.102 0.898 43 H 0.111 0.889 44 H 0.098 0.902 45 H 0.032 0.968 46 H 0.097 0.903 47 H 0.081 0.919 48 H 0.048 0.952 49 H 0.045 0.955 50 H 0.266 0.734 51 H 0.024 0.976 52 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.348 -15.054 16.226 30.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.163 4.163 3 C -0.167 4.167 4 C 0.018 3.982 5 N -0.144 5.144 6 C -0.115 4.115 7 C 0.182 3.818 8 H 0.152 0.848 9 O -0.353 6.353 10 C -0.225 4.225 11 C -0.200 4.200 12 C -0.184 4.184 13 N -0.154 5.154 14 N -0.205 5.205 15 C 0.004 3.996 16 N -0.174 5.174 17 C -0.058 4.058 18 C -0.144 4.144 19 C -0.164 4.164 20 C 0.011 3.989 21 H 0.056 0.944 22 C -0.563 4.563 23 H 0.042 0.958 24 C -0.185 4.185 25 N -0.592 5.592 26 Si 0.781 3.219 27 H -0.189 1.189 28 H -0.229 1.229 29 H -0.159 1.159 30 C -0.013 4.013 31 H 0.131 0.869 32 H 0.139 0.861 33 H 0.055 0.945 34 H 0.093 0.907 35 H 0.084 0.916 36 H 0.147 0.853 37 H 0.129 0.871 38 H 0.244 0.756 39 H 0.107 0.893 40 H 0.135 0.865 41 H 0.116 0.884 42 H 0.120 0.880 43 H 0.129 0.871 44 H 0.116 0.884 45 H 0.051 0.949 46 H 0.115 0.885 47 H 0.100 0.900 48 H 0.066 0.934 49 H 0.064 0.936 50 H 0.075 0.925 51 H 0.043 0.957 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -20.203 -15.058 15.754 29.717 hybrid contribution 1.168 0.917 -0.554 1.585 sum -19.036 -14.140 15.201 28.167 Atomic orbital electron populations 1.24165 0.94383 1.03736 0.96436 1.21773 0.95989 0.94758 1.03746 1.20722 1.00454 0.94537 1.00938 1.21279 1.02535 0.96532 0.77864 1.46480 1.17532 1.35523 1.14842 1.26156 1.00094 0.97687 0.87598 1.19693 0.82761 0.79217 1.00133 0.84807 1.86526 1.91910 1.21172 1.35724 1.22751 0.90443 1.08196 1.01087 1.23202 0.99411 0.96181 1.01191 1.22974 0.95156 0.96432 1.03799 1.73775 1.03083 1.17855 1.20680 1.74622 1.16226 1.11509 1.18109 1.22652 0.91477 0.96472 0.88996 1.58870 1.11654 1.19254 1.27619 1.22245 0.90802 0.95399 0.97358 1.21634 0.98084 0.97280 0.97417 1.21972 0.98448 0.98451 0.97521 1.19035 0.92522 0.92722 0.94656 0.94425 1.21226 1.25260 1.16464 0.93301 0.95781 1.25919 0.95543 0.95047 1.01968 1.70069 1.31944 1.22840 1.34366 0.85752 0.80143 0.75836 0.80197 1.18905 1.22926 1.15907 1.21642 0.96507 0.93523 0.89653 0.86944 0.86141 0.94469 0.90729 0.91571 0.85274 0.87143 0.75629 0.89346 0.86527 0.88391 0.87984 0.87105 0.88373 0.94922 0.88510 0.90036 0.93362 0.93636 0.92487 0.95739 0.93616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 13.88 67.78 0.94 -0.90 16 2 C -0.16 -2.76 5.63 -16.49 -0.09 -2.85 16 3 C -0.11 -2.38 10.03 71.24 0.71 -1.67 16 4 C 0.14 2.28 6.19 85.63 0.53 2.81 16 5 N -0.45 -11.37 2.79 -518.90 -1.45 -12.81 16 6 C 0.15 3.98 6.88 137.64 0.95 4.93 16 7 C 0.24 4.17 3.63 29.85 0.11 4.27 16 8 H 0.13 1.56 6.52 -2.39 -0.02 1.54 16 9 O -0.55 -9.89 13.18 -148.98 -1.96 -11.86 16 10 C -0.21 -3.24 5.38 -10.80 -0.06 -3.30 16 11 C -0.16 -1.75 9.98 30.62 0.31 -1.44 16 12 C -0.15 -1.59 10.11 30.62 0.31 -1.29 16 13 N -0.31 -10.81 12.18 -49.53 -0.60 -11.42 16 14 N -0.36 -14.33 11.61 -58.00 -0.67 -15.01 16 15 C 0.36 12.19 6.77 260.11 1.76 13.95 16 16 N -0.45 -15.13 4.67 -706.14 -3.30 -18.43 16 17 C 0.07 1.96 5.40 86.33 0.47 2.43 16 18 C -0.11 -3.02 6.09 30.65 0.19 -2.83 16 19 C -0.13 -5.01 4.74 30.67 0.15 -4.86 16 20 C 0.03 1.38 1.85 -11.49 -0.02 1.36 16 21 H 0.04 1.73 7.20 -2.39 -0.02 1.71 16 22 C -0.52 -30.49 9.14 25.60 0.23 -30.25 16 23 H 0.02 1.58 7.99 -2.92 -0.02 1.56 16 24 C 0.01 0.71 5.45 84.65 0.46 1.17 16 25 N -0.95 -60.46 13.96 21.45 0.30 -60.16 16 26 Si 0.95 43.98 24.36 68.60 1.67 45.65 16 27 H -0.26 -11.41 6.89 99.48 0.69 -10.72 16 28 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 29 H -0.24 -9.72 6.53 99.48 0.65 -9.07 16 30 C 0.11 4.93 4.26 86.33 0.37 5.30 16 31 H 0.11 1.28 8.04 -2.91 -0.02 1.26 16 32 H 0.12 0.91 5.70 -2.91 -0.02 0.89 16 33 H 0.04 1.07 8.14 -2.38 -0.02 1.05 16 34 H 0.07 1.35 8.06 -2.39 -0.02 1.33 16 35 H 0.07 1.47 8.09 -2.39 -0.02 1.45 16 36 H 0.13 1.22 6.75 -2.39 -0.02 1.21 16 37 H 0.11 1.70 7.87 -2.39 -0.02 1.68 16 38 H 0.39 6.45 9.04 -74.06 -0.67 5.78 16 39 H 0.09 1.91 8.09 -2.39 -0.02 1.89 16 40 H 0.12 0.78 6.02 -2.39 -0.01 0.76 16 41 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.10 2.17 7.86 -2.39 -0.02 2.15 16 45 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 46 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 47 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 48 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 49 H 0.05 1.85 3.37 -2.39 -0.01 1.85 16 50 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 51 H 0.02 1.16 8.06 -2.39 -0.02 1.15 16 52 H 0.05 2.16 8.10 -2.39 -0.02 2.14 16 Total: -1.00 -76.96 408.87 1.47 -75.50 By element: Atomic # 1 Polarization: 21.54 SS G_CDS: 0.18 Total: 21.72 kcal Atomic # 6 Polarization: -20.49 SS G_CDS: 7.30 Total: -13.18 kcal Atomic # 7 Polarization: -112.10 SS G_CDS: -5.72 Total: -117.83 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: -1.96 Total: -11.86 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 1.67 Total: 45.65 kcal Total: -76.96 1.47 -75.50 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344027349.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.725 kcal (2) G-P(sol) polarization free energy of solvation -76.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds