Wall clock time and date at job start Wed Apr 1 2020 05:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50706 * 119.99991 * 2 1 4 4 C 1.50698 * 120.00010 * 179.97438 * 2 1 3 5 5 N 1.46501 * 109.46871 * 101.97620 * 4 2 1 6 6 C 1.36736 * 127.13810 * 81.68925 * 5 4 2 7 7 C 1.50701 * 126.34733 * 359.95747 * 6 5 4 8 8 H 1.09001 * 109.47419 * 15.00162 * 7 6 5 9 9 O 1.42900 * 109.47156 * 135.00794 * 7 6 5 10 10 C 1.53002 * 109.47119 * 255.00403 * 7 6 5 11 11 C 1.53003 * 117.50057 * 248.74459 * 10 7 6 12 12 C 1.52997 * 117.49873 * 180.08665 * 10 7 6 13 13 N 1.30296 * 107.30533 * 179.83144 * 6 5 4 14 14 N 1.28529 * 110.05347 * 0.44168 * 13 6 5 15 15 C 1.31218 * 109.85934 * 359.71464 * 14 13 6 16 16 N 1.38580 * 126.47316 * 179.97438 * 15 14 13 17 17 C 1.46843 * 111.00012 * 246.96922 * 16 15 14 18 18 C 1.53031 * 109.52490 * 174.15856 * 17 16 15 19 19 C 1.53119 * 109.27841 * 59.18277 * 18 17 16 20 20 C 1.53118 * 109.15640 * 302.34291 * 19 18 17 21 21 H 1.09001 * 109.50721 * 297.71516 * 20 19 18 22 22 C 1.50703 * 109.50372 * 177.63594 * 20 19 18 23 23 H 1.08007 * 119.99824 * 240.00357 * 22 20 19 24 24 C 1.37872 * 119.99990 * 59.99993 * 22 20 19 25 25 N 1.31512 * 120.00364 * 0.02562 * 24 22 20 26 26 Si 1.86798 * 119.99990 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47026 * 60.00176 * 26 24 22 28 28 H 1.48500 * 109.47176 * 179.97438 * 26 24 22 29 29 H 1.48501 * 109.47341 * 300.00121 * 26 24 22 30 30 C 1.46837 * 111.00039 * 122.75726 * 16 15 14 31 31 H 1.08000 * 119.99745 * 189.07335 * 1 2 3 32 32 H 1.07998 * 119.99887 * 9.07622 * 1 2 3 33 33 H 1.08993 * 109.46710 * 84.40544 * 3 2 1 34 34 H 1.08996 * 109.47236 * 204.40782 * 3 2 1 35 35 H 1.08993 * 109.46596 * 324.40576 * 3 2 1 36 36 H 1.09007 * 109.47104 * 221.97464 * 4 2 1 37 37 H 1.08997 * 109.47347 * 341.97326 * 4 2 1 38 38 H 0.96700 * 114.00365 * 59.99849 * 9 7 6 39 39 H 1.08998 * 115.55128 * 34.42078 * 10 7 6 40 40 H 1.09004 * 117.49785 * 0.02562 * 11 10 7 41 41 H 1.08996 * 117.49945 * 145.01972 * 11 10 7 42 42 H 1.09006 * 117.50104 * 214.98335 * 12 10 7 43 43 H 1.09003 * 117.49959 * 359.97358 * 12 10 7 44 44 H 1.09002 * 109.46736 * 294.18153 * 17 16 15 45 45 H 1.09006 * 109.46126 * 54.15186 * 17 16 15 46 46 H 1.09000 * 109.50821 * 179.11806 * 18 17 16 47 47 H 1.08997 * 109.50923 * 299.23649 * 18 17 16 48 48 H 1.08996 * 109.52424 * 62.24966 * 19 18 17 49 49 H 1.08998 * 109.52343 * 182.44083 * 19 18 17 50 50 H 0.97000 * 120.00495 * 179.97438 * 25 24 22 51 51 H 1.08998 * 109.46643 * 305.85527 * 30 16 15 52 52 H 1.09003 * 109.46136 * 65.82360 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3052 0.0000 4 6 2.0636 -1.3051 0.0006 5 7 2.5559 -1.5852 -1.3505 6 6 3.6823 -1.0814 -1.9396 7 6 4.6630 -0.1216 -1.3167 8 1 4.5007 -0.0843 -0.2395 9 8 5.9959 -0.5632 -1.5826 10 6 4.4597 1.2732 -1.9118 11 6 5.5664 1.8251 -2.8127 12 6 5.3678 2.3960 -1.4064 13 7 3.7518 -1.5869 -3.1385 14 7 2.7488 -2.3627 -3.3485 15 6 1.9825 -2.3987 -2.2840 16 7 0.8116 -3.1250 -2.1360 17 6 -0.3501 -2.2337 -2.0250 18 6 -1.6340 -3.0663 -2.0097 19 6 -1.5947 -4.0342 -0.8239 20 6 -0.3498 -4.9184 -0.9380 21 1 -0.4078 -5.5127 -1.8499 22 6 -0.2724 -5.8348 0.2558 23 1 0.5822 -5.7921 0.9149 24 6 -1.2926 -6.7276 0.5068 25 7 -2.3331 -6.7799 -0.2959 26 14 -1.1970 -7.8631 1.9870 27 1 -1.1164 -7.0522 3.2285 28 1 -2.4096 -8.7191 2.0333 29 1 0.0106 -8.7202 1.8763 30 6 0.8969 -4.0320 -0.9845 31 1 -0.5400 -0.9236 0.1475 32 1 -0.5400 0.9236 -0.1475 33 1 2.1584 1.6698 1.0227 34 1 3.0557 1.1519 -0.4246 35 1 1.5215 2.0375 -0.5981 36 1 2.9069 -1.2374 0.6879 37 1 1.3990 -2.1082 0.3189 38 1 6.2110 -0.6203 -2.5236 39 1 3.4310 1.5321 -2.1621 40 1 6.4392 1.1944 -2.9818 41 1 5.2657 2.4474 -3.6555 42 1 4.9365 3.3938 -1.3246 43 1 6.1098 2.1412 -0.6496 44 1 -0.2794 -1.6581 -1.1021 45 1 -0.3686 -1.5534 -2.8766 46 1 -2.4952 -2.4054 -1.9115 47 1 -1.7124 -3.6315 -2.9384 48 1 -1.5557 -3.4685 0.1069 49 1 -2.4876 -4.6593 -0.8342 50 1 -3.0506 -7.4083 -0.1195 51 1 1.7841 -4.6579 -1.0800 52 1 0.9618 -3.4481 -0.0663 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001344027350.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:52 Heat of formation + Delta-G solvation = 99.621547 kcal Electronic energy + Delta-G solvation = -32698.549422 eV Core-core repulsion = 28701.741218 eV Total energy + Delta-G solvation = -3996.808203 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.96563 -39.14393 -38.66916 -36.84862 -35.37852 -34.07482 -33.39003 -32.00084 -30.27130 -30.01830 -28.25819 -27.07056 -26.74028 -25.12100 -23.75072 -22.73687 -22.02955 -21.78989 -20.93221 -20.55832 -19.38274 -18.84884 -17.58435 -17.02071 -16.62336 -16.42859 -16.03213 -15.85189 -15.26864 -15.03934 -14.63880 -14.52460 -14.28183 -13.80868 -13.62072 -13.54657 -13.21505 -12.98669 -12.77144 -12.65269 -12.29739 -12.16725 -11.97949 -11.92125 -11.81202 -11.57837 -11.44754 -11.01546 -10.90460 -10.89064 -10.84151 -10.64652 -10.55509 -10.29997 -10.20930 -10.05391 -10.01483 -9.70408 -9.38665 -9.36392 -9.00627 -8.74172 -8.46173 -8.20992 -6.09466 -4.17095 1.54720 1.85055 2.61616 2.98266 3.25067 3.30859 3.32599 3.37979 3.74849 3.95559 4.11426 4.28996 4.36290 4.38750 4.42079 4.51783 4.68945 4.81940 4.91578 4.97668 5.07064 5.20716 5.22027 5.33689 5.34395 5.36056 5.37218 5.55223 5.60166 5.66148 5.69815 5.74824 5.77908 5.82037 5.88966 5.94284 6.02347 6.16841 6.21053 6.24932 6.42250 6.45449 6.49527 6.58970 6.75503 6.92552 7.17297 7.25356 7.27877 7.59149 7.62518 7.89062 7.99713 8.28680 8.85352 8.95876 9.48216 10.96520 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016642 B = 0.003091 C = 0.003025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.038799 B = 9057.511734 C = 9254.980902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.161 4.161 3 C -0.136 4.136 4 C 0.120 3.880 5 N -0.483 5.483 6 C 0.135 3.865 7 C 0.234 3.766 8 H 0.115 0.885 9 O -0.543 6.543 10 C -0.190 4.190 11 C -0.166 4.166 12 C -0.166 4.166 13 N -0.281 5.281 14 N -0.273 5.273 15 C 0.370 3.630 16 N -0.442 5.442 17 C 0.042 3.958 18 C -0.118 4.118 19 C -0.112 4.112 20 C 0.058 3.942 21 H 0.041 0.959 22 C -0.520 4.520 23 H 0.054 0.946 24 C 0.067 3.933 25 N -0.885 5.885 26 Si 0.892 3.108 27 H -0.278 1.278 28 H -0.286 1.286 29 H -0.276 1.276 30 C 0.063 3.937 31 H 0.117 0.883 32 H 0.108 0.892 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.065 0.935 36 H 0.097 0.903 37 H 0.118 0.882 38 H 0.388 0.612 39 H 0.115 0.885 40 H 0.102 0.898 41 H 0.096 0.904 42 H 0.096 0.904 43 H 0.100 0.900 44 H 0.057 0.943 45 H 0.064 0.936 46 H 0.055 0.945 47 H 0.067 0.933 48 H 0.031 0.969 49 H 0.097 0.903 50 H 0.262 0.738 51 H 0.068 0.932 52 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.008 19.769 1.065 21.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.162 4.162 3 C -0.192 4.192 4 C -0.002 4.002 5 N -0.181 5.181 6 C -0.134 4.134 7 C 0.171 3.829 8 H 0.132 0.868 9 O -0.349 6.349 10 C -0.209 4.209 11 C -0.203 4.203 12 C -0.203 4.203 13 N -0.122 5.122 14 N -0.115 5.115 15 C 0.015 3.985 16 N -0.167 5.167 17 C -0.084 4.084 18 C -0.156 4.156 19 C -0.150 4.150 20 C 0.039 3.961 21 H 0.059 0.941 22 C -0.559 4.559 23 H 0.072 0.928 24 C -0.135 4.135 25 N -0.523 5.523 26 Si 0.720 3.280 27 H -0.203 1.203 28 H -0.212 1.212 29 H -0.202 1.202 30 C -0.063 4.063 31 H 0.135 0.865 32 H 0.126 0.874 33 H 0.091 0.909 34 H 0.097 0.903 35 H 0.084 0.916 36 H 0.116 0.884 37 H 0.136 0.864 38 H 0.238 0.762 39 H 0.132 0.868 40 H 0.121 0.879 41 H 0.115 0.885 42 H 0.114 0.886 43 H 0.119 0.881 44 H 0.075 0.925 45 H 0.082 0.918 46 H 0.074 0.926 47 H 0.086 0.914 48 H 0.050 0.950 49 H 0.116 0.884 50 H 0.072 0.928 51 H 0.087 0.913 52 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 9.320 19.022 -0.146 21.184 hybrid contribution -0.665 -0.005 2.157 2.257 sum 8.656 19.017 2.011 20.991 Atomic orbital electron populations 1.24159 0.95232 1.03040 0.97164 1.21794 0.95681 0.95085 1.03668 1.21276 1.01299 0.94014 1.02611 1.21283 1.00577 0.97330 0.81033 1.47648 1.20601 1.35516 1.14288 1.25266 0.91825 1.02963 0.93318 1.19490 0.78953 0.86394 0.98028 0.86773 1.86563 1.27293 1.89277 1.31785 1.23005 0.97737 0.93983 1.06190 1.22971 1.00022 1.03339 0.93997 1.22993 1.02214 0.97097 0.98004 1.73995 1.16695 1.09174 1.12354 1.74523 1.00889 1.16333 1.19715 1.23639 0.95018 0.93228 0.86581 1.59288 0.96830 1.16029 1.44510 1.22793 0.90137 0.94412 1.01077 1.21718 0.93582 0.98264 1.02015 1.21713 1.03857 0.96218 0.93245 1.18687 0.87387 0.91783 0.98214 0.94068 1.20993 1.05241 1.19292 1.10383 0.92816 1.24900 0.95315 0.96856 0.96458 1.69858 1.08718 1.36601 1.37121 0.86658 0.77543 0.80818 0.82989 1.20333 1.21197 1.20202 1.22738 1.03341 0.93476 0.86709 0.86532 0.87389 0.90930 0.90321 0.91629 0.88445 0.86449 0.76192 0.86751 0.87942 0.88510 0.88586 0.88117 0.92547 0.91771 0.92598 0.91432 0.94982 0.88443 0.92764 0.91323 0.95030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.63 12.08 29.01 0.35 -1.28 16 2 C -0.16 -1.67 5.59 -101.07 -0.57 -2.23 16 3 C -0.14 -1.10 9.56 36.01 0.34 -0.76 16 4 C 0.12 1.47 5.24 -5.19 -0.03 1.44 16 5 N -0.48 -7.21 2.79 -115.37 -0.32 -7.53 16 6 C 0.13 1.95 6.85 -154.02 -1.06 0.89 16 7 C 0.23 2.49 2.89 -27.88 -0.08 2.41 16 8 H 0.11 1.09 6.36 -51.93 -0.33 0.76 16 9 O -0.54 -6.02 12.48 -35.23 -0.44 -6.46 16 10 C -0.19 -1.66 3.73 -90.62 -0.34 -1.99 16 11 C -0.17 -1.27 9.74 -26.69 -0.26 -1.53 16 12 C -0.17 -1.13 10.19 -26.70 -0.27 -1.41 16 13 N -0.28 -4.91 12.10 32.99 0.40 -4.51 16 14 N -0.27 -5.47 12.23 30.31 0.37 -5.09 16 15 C 0.37 6.79 6.64 -318.87 -2.12 4.67 16 16 N -0.44 -8.41 4.70 -174.56 -0.82 -9.23 16 17 C 0.04 0.70 5.28 -3.84 -0.02 0.68 16 18 C -0.12 -2.11 6.09 -26.65 -0.16 -2.27 16 19 C -0.11 -2.40 5.02 -26.61 -0.13 -2.54 16 20 C 0.06 1.37 2.26 -91.69 -0.21 1.16 16 21 H 0.04 1.10 8.14 -51.93 -0.42 0.68 16 22 C -0.52 -13.45 8.57 -34.44 -0.30 -13.74 16 23 H 0.05 1.37 7.75 -52.48 -0.41 0.96 16 24 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 25 N -0.89 -24.07 11.35 55.43 0.63 -23.44 16 26 Si 0.89 20.42 29.54 -169.99 -5.02 15.40 16 27 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 28 H -0.29 -6.55 7.11 56.52 0.40 -6.14 16 29 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 30 C 0.06 1.27 4.37 -3.84 -0.02 1.26 16 31 H 0.12 1.35 5.93 -52.49 -0.31 1.04 16 32 H 0.11 0.93 8.05 -52.49 -0.42 0.51 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.08 0.63 2.27 -51.93 -0.12 0.51 16 35 H 0.06 0.51 8.10 -51.93 -0.42 0.08 16 36 H 0.10 0.99 7.45 -51.92 -0.39 0.60 16 37 H 0.12 1.61 4.12 -51.93 -0.21 1.40 16 38 H 0.39 3.73 7.48 45.56 0.34 4.07 16 39 H 0.11 1.09 7.03 -51.93 -0.37 0.73 16 40 H 0.10 0.74 6.37 -51.93 -0.33 0.41 16 41 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 43 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.06 0.84 2.05 -51.93 -0.11 0.73 16 45 H 0.06 1.05 8.10 -51.93 -0.42 0.63 16 46 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 47 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 48 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 49 H 0.10 2.38 6.15 -51.93 -0.32 2.06 16 50 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 51 H 0.07 1.48 8.10 -51.93 -0.42 1.06 16 52 H 0.03 0.60 4.85 -51.93 -0.25 0.34 16 LS Contribution 389.52 15.07 5.87 5.87 Total: -1.00 -29.83 389.52 -11.29 -41.11 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -7.00 Total: 7.44 kcal Atomic # 6 Polarization: -8.62 SS G_CDS: -4.95 Total: -13.57 kcal Atomic # 7 Polarization: -50.06 SS G_CDS: 0.26 Total: -49.80 kcal Atomic # 8 Polarization: -6.02 SS G_CDS: -0.44 Total: -6.46 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -29.83 -11.29 -41.11 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344027350.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.736 kcal (2) G-P(sol) polarization free energy of solvation -29.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds