Wall clock time and date at job start Wed Apr 1 2020 05:15:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50706 * 119.99991 * 2 1 4 4 C 1.50698 * 120.00010 * 179.97438 * 2 1 3 5 5 N 1.46501 * 109.46871 * 101.97620 * 4 2 1 6 6 C 1.36736 * 127.13810 * 81.68925 * 5 4 2 7 7 C 1.50701 * 126.34733 * 359.95747 * 6 5 4 8 8 H 1.09001 * 109.47419 * 15.00162 * 7 6 5 9 9 O 1.42900 * 109.47156 * 135.00794 * 7 6 5 10 10 C 1.53002 * 109.47119 * 255.00403 * 7 6 5 11 11 C 1.53003 * 117.50057 * 248.74459 * 10 7 6 12 12 C 1.52997 * 117.49873 * 180.08665 * 10 7 6 13 13 N 1.30296 * 107.30533 * 179.83144 * 6 5 4 14 14 N 1.28529 * 110.05347 * 0.44168 * 13 6 5 15 15 C 1.31218 * 109.85934 * 359.71464 * 14 13 6 16 16 N 1.38580 * 126.47316 * 179.97438 * 15 14 13 17 17 C 1.46843 * 111.00012 * 246.96922 * 16 15 14 18 18 C 1.53031 * 109.52490 * 174.15856 * 17 16 15 19 19 C 1.53119 * 109.27841 * 59.18277 * 18 17 16 20 20 C 1.53118 * 109.15640 * 302.34291 * 19 18 17 21 21 H 1.09001 * 109.50721 * 297.71516 * 20 19 18 22 22 C 1.50703 * 109.50372 * 177.63594 * 20 19 18 23 23 H 1.08007 * 119.99824 * 240.00357 * 22 20 19 24 24 C 1.37872 * 119.99990 * 59.99993 * 22 20 19 25 25 N 1.31512 * 120.00364 * 0.02562 * 24 22 20 26 26 Si 1.86798 * 119.99990 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47026 * 60.00176 * 26 24 22 28 28 H 1.48500 * 109.47176 * 179.97438 * 26 24 22 29 29 H 1.48501 * 109.47341 * 300.00121 * 26 24 22 30 30 C 1.46837 * 111.00039 * 122.75726 * 16 15 14 31 31 H 1.08000 * 119.99745 * 189.07335 * 1 2 3 32 32 H 1.07998 * 119.99887 * 9.07622 * 1 2 3 33 33 H 1.08993 * 109.46710 * 84.40544 * 3 2 1 34 34 H 1.08996 * 109.47236 * 204.40782 * 3 2 1 35 35 H 1.08993 * 109.46596 * 324.40576 * 3 2 1 36 36 H 1.09007 * 109.47104 * 221.97464 * 4 2 1 37 37 H 1.08997 * 109.47347 * 341.97326 * 4 2 1 38 38 H 0.96700 * 114.00365 * 59.99849 * 9 7 6 39 39 H 1.08998 * 115.55128 * 34.42078 * 10 7 6 40 40 H 1.09004 * 117.49785 * 0.02562 * 11 10 7 41 41 H 1.08996 * 117.49945 * 145.01972 * 11 10 7 42 42 H 1.09006 * 117.50104 * 214.98335 * 12 10 7 43 43 H 1.09003 * 117.49959 * 359.97358 * 12 10 7 44 44 H 1.09002 * 109.46736 * 294.18153 * 17 16 15 45 45 H 1.09006 * 109.46126 * 54.15186 * 17 16 15 46 46 H 1.09000 * 109.50821 * 179.11806 * 18 17 16 47 47 H 1.08997 * 109.50923 * 299.23649 * 18 17 16 48 48 H 1.08996 * 109.52424 * 62.24966 * 19 18 17 49 49 H 1.08998 * 109.52343 * 182.44083 * 19 18 17 50 50 H 0.97000 * 120.00495 * 179.97438 * 25 24 22 51 51 H 1.08998 * 109.46643 * 305.85527 * 30 16 15 52 52 H 1.09003 * 109.46136 * 65.82360 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3052 0.0000 4 6 2.0636 -1.3051 0.0006 5 7 2.5559 -1.5852 -1.3505 6 6 3.6823 -1.0814 -1.9396 7 6 4.6630 -0.1216 -1.3167 8 1 4.5007 -0.0843 -0.2395 9 8 5.9959 -0.5632 -1.5826 10 6 4.4597 1.2732 -1.9118 11 6 5.5664 1.8251 -2.8127 12 6 5.3678 2.3960 -1.4064 13 7 3.7518 -1.5869 -3.1385 14 7 2.7488 -2.3627 -3.3485 15 6 1.9825 -2.3987 -2.2840 16 7 0.8116 -3.1250 -2.1360 17 6 -0.3501 -2.2337 -2.0250 18 6 -1.6340 -3.0663 -2.0097 19 6 -1.5947 -4.0342 -0.8239 20 6 -0.3498 -4.9184 -0.9380 21 1 -0.4078 -5.5127 -1.8499 22 6 -0.2724 -5.8348 0.2558 23 1 0.5822 -5.7921 0.9149 24 6 -1.2926 -6.7276 0.5068 25 7 -2.3331 -6.7799 -0.2959 26 14 -1.1970 -7.8631 1.9870 27 1 -1.1164 -7.0522 3.2285 28 1 -2.4096 -8.7191 2.0333 29 1 0.0106 -8.7202 1.8763 30 6 0.8969 -4.0320 -0.9845 31 1 -0.5400 -0.9236 0.1475 32 1 -0.5400 0.9236 -0.1475 33 1 2.1584 1.6698 1.0227 34 1 3.0557 1.1519 -0.4246 35 1 1.5215 2.0375 -0.5981 36 1 2.9069 -1.2374 0.6879 37 1 1.3990 -2.1082 0.3189 38 1 6.2110 -0.6203 -2.5236 39 1 3.4310 1.5321 -2.1621 40 1 6.4392 1.1944 -2.9818 41 1 5.2657 2.4474 -3.6555 42 1 4.9365 3.3938 -1.3246 43 1 6.1098 2.1412 -0.6496 44 1 -0.2794 -1.6581 -1.1021 45 1 -0.3686 -1.5534 -2.8766 46 1 -2.4952 -2.4054 -1.9115 47 1 -1.7124 -3.6315 -2.9384 48 1 -1.5557 -3.4685 0.1069 49 1 -2.4876 -4.6593 -0.8342 50 1 -3.0506 -7.4083 -0.1195 51 1 1.7841 -4.6579 -1.0800 52 1 0.9618 -3.4481 -0.0663 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001344027350.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:50 Heat of formation + Delta-G solvation = 83.092491 kcal Electronic energy + Delta-G solvation = -32699.266175 eV Core-core repulsion = 28701.741218 eV Total energy + Delta-G solvation = -3997.524957 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -44.23203 -40.32223 -39.73943 -37.85848 -36.11644 -35.76062 -34.58841 -33.61181 -31.93646 -31.25537 -29.19423 -28.07939 -27.67095 -26.97768 -25.26964 -23.44405 -23.31177 -23.00137 -22.27559 -21.44138 -20.72595 -20.05031 -18.73528 -18.37835 -17.78090 -17.38353 -17.28530 -17.18371 -16.53142 -16.48517 -15.97616 -15.47408 -15.35052 -14.99720 -14.89239 -14.60049 -14.46249 -14.26727 -14.10800 -13.90261 -13.56595 -13.31927 -13.05415 -12.86504 -12.80742 -12.73890 -12.65097 -12.57636 -12.42344 -12.30435 -11.96948 -11.82268 -11.67377 -11.62785 -11.47292 -11.30854 -11.17014 -11.09404 -11.03282 -10.81674 -10.43472 -10.21952 -10.11277 -9.63220 -8.11018 -6.25791 0.50871 0.76098 1.42030 1.43712 1.50548 1.55580 1.66871 2.31409 2.47840 2.75999 3.03705 3.16933 3.25423 3.32961 3.52146 3.67250 3.75646 3.88887 3.95832 3.98534 4.04074 4.08535 4.17351 4.23031 4.32132 4.42747 4.45924 4.51241 4.64044 4.70600 4.71116 4.78178 4.80008 4.84197 4.85235 4.89635 4.95023 5.01551 5.03533 5.09200 5.18748 5.25648 5.31355 5.36796 5.44622 5.49067 5.60299 5.65561 5.72049 5.95305 6.10753 6.22213 6.32109 6.45179 6.83877 7.42631 7.65148 8.93655 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016642 B = 0.003091 C = 0.003025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.038799 B = 9057.511734 C = 9254.980902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.161 4.161 3 C -0.132 4.132 4 C 0.113 3.887 5 N -0.477 5.477 6 C 0.155 3.845 7 C 0.236 3.764 8 H 0.132 0.868 9 O -0.549 6.549 10 C -0.198 4.198 11 C -0.173 4.173 12 C -0.144 4.144 13 N -0.308 5.308 14 N -0.313 5.313 15 C 0.355 3.645 16 N -0.459 5.459 17 C 0.047 3.953 18 C -0.109 4.109 19 C -0.101 4.101 20 C 0.058 3.942 21 H -0.005 1.005 22 C -0.538 4.538 23 H 0.054 0.946 24 C 0.021 3.979 25 N -0.911 5.911 26 Si 0.953 3.047 27 H -0.266 1.266 28 H -0.285 1.285 29 H -0.277 1.277 30 C 0.080 3.920 31 H 0.101 0.899 32 H 0.129 0.871 33 H 0.091 0.909 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.122 0.878 37 H 0.100 0.900 38 H 0.393 0.607 39 H 0.109 0.891 40 H 0.104 0.896 41 H 0.100 0.900 42 H 0.112 0.888 43 H 0.105 0.895 44 H 0.081 0.919 45 H 0.071 0.929 46 H 0.087 0.913 47 H 0.048 0.952 48 H 0.039 0.961 49 H 0.066 0.934 50 H 0.262 0.738 51 H 0.046 0.954 52 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.984 22.758 2.947 25.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.162 4.162 3 C -0.188 4.188 4 C -0.009 4.009 5 N -0.174 5.174 6 C -0.114 4.114 7 C 0.174 3.826 8 H 0.149 0.851 9 O -0.356 6.356 10 C -0.218 4.218 11 C -0.210 4.210 12 C -0.181 4.181 13 N -0.149 5.149 14 N -0.154 5.154 15 C -0.001 4.001 16 N -0.184 5.184 17 C -0.078 4.078 18 C -0.147 4.147 19 C -0.139 4.139 20 C 0.039 3.961 21 H 0.013 0.987 22 C -0.576 4.576 23 H 0.072 0.928 24 C -0.179 4.179 25 N -0.550 5.550 26 Si 0.778 3.222 27 H -0.191 1.191 28 H -0.210 1.210 29 H -0.202 1.202 30 C -0.046 4.046 31 H 0.119 0.881 32 H 0.147 0.853 33 H 0.109 0.891 34 H 0.097 0.903 35 H 0.091 0.909 36 H 0.140 0.860 37 H 0.118 0.882 38 H 0.244 0.756 39 H 0.127 0.873 40 H 0.122 0.878 41 H 0.119 0.881 42 H 0.131 0.869 43 H 0.123 0.877 44 H 0.098 0.902 45 H 0.089 0.911 46 H 0.105 0.895 47 H 0.067 0.933 48 H 0.058 0.942 49 H 0.084 0.916 50 H 0.071 0.929 51 H 0.065 0.935 52 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 10.306 22.031 1.740 24.385 hybrid contribution -0.898 -0.916 1.555 2.016 sum 9.408 21.115 3.295 23.350 Atomic orbital electron populations 1.24234 0.95348 1.03313 0.97156 1.21876 0.95718 0.95060 1.03543 1.21302 1.00915 0.92661 1.03943 1.21486 1.01557 0.97912 0.79897 1.47672 1.20387 1.34578 1.14717 1.26095 0.91385 1.01640 0.92306 1.19792 0.77726 0.86370 0.98725 0.85090 1.86554 1.27241 1.89374 1.32405 1.22837 0.97914 0.93291 1.07713 1.23079 0.99586 1.03508 0.94840 1.23067 1.00922 0.96906 0.97205 1.73918 1.16586 1.10152 1.14198 1.74416 1.01974 1.17634 1.21371 1.23331 0.95015 0.94372 0.87366 1.59069 0.98083 1.17149 1.44103 1.22827 0.88461 0.93916 1.02615 1.21619 0.95763 0.97999 0.99349 1.21475 1.01157 0.96155 0.95162 1.18564 0.90080 0.92130 0.95308 0.98666 1.21344 1.05195 1.20067 1.11029 0.92823 1.25642 0.95034 0.98261 0.98978 1.70004 1.09242 1.37179 1.38558 0.85699 0.77288 0.78972 0.80215 1.19121 1.21035 1.20229 1.22357 1.00521 0.93390 0.88301 0.88093 0.85277 0.89092 0.90285 0.90896 0.85984 0.88206 0.75599 0.87309 0.87806 0.88127 0.86937 0.87653 0.90192 0.91088 0.89470 0.93336 0.94191 0.91564 0.92879 0.93537 0.93171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.93 12.08 67.77 0.82 -2.11 16 2 C -0.16 -2.87 5.59 -16.49 -0.09 -2.96 16 3 C -0.13 -1.63 9.56 71.24 0.68 -0.95 16 4 C 0.11 2.52 5.24 85.63 0.45 2.97 16 5 N -0.48 -13.74 2.79 -518.91 -1.45 -15.18 16 6 C 0.16 4.29 6.85 137.64 0.94 5.24 16 7 C 0.24 4.46 2.89 29.85 0.09 4.55 16 8 H 0.13 2.04 6.36 -2.39 -0.02 2.03 16 9 O -0.55 -11.05 12.48 -148.98 -1.86 -12.91 16 10 C -0.20 -2.90 3.73 -10.79 -0.04 -2.94 16 11 C -0.17 -2.21 9.74 30.62 0.30 -1.92 16 12 C -0.14 -1.44 10.19 30.62 0.31 -1.13 16 13 N -0.31 -10.75 12.10 -49.54 -0.60 -11.34 16 14 N -0.31 -12.74 12.23 -58.00 -0.71 -13.44 16 15 C 0.36 13.13 6.64 260.11 1.73 14.86 16 16 N -0.46 -17.86 4.70 -706.18 -3.32 -21.17 16 17 C 0.05 1.56 5.28 86.32 0.46 2.02 16 18 C -0.11 -3.93 6.09 30.64 0.19 -3.74 16 19 C -0.10 -4.45 5.02 30.67 0.15 -4.29 16 20 C 0.06 2.85 2.26 -11.49 -0.03 2.83 16 21 H 0.00 -0.28 8.14 -2.39 -0.02 -0.30 16 22 C -0.54 -28.55 8.57 25.60 0.22 -28.33 16 23 H 0.05 2.77 7.75 -2.91 -0.02 2.75 16 24 C 0.02 1.10 5.30 84.65 0.45 1.55 16 25 N -0.91 -51.08 11.35 21.45 0.24 -50.84 16 26 Si 0.95 42.24 29.54 68.60 2.03 44.26 16 27 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 28 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 29 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 30 C 0.08 3.36 4.37 86.33 0.38 3.74 16 31 H 0.10 2.15 5.93 -2.91 -0.02 2.13 16 32 H 0.13 1.78 8.05 -2.91 -0.02 1.76 16 33 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.08 0.98 2.27 -2.39 -0.01 0.97 16 35 H 0.07 0.83 8.10 -2.39 -0.02 0.81 16 36 H 0.12 2.12 7.45 -2.38 -0.02 2.11 16 37 H 0.10 2.62 4.12 -2.39 -0.01 2.61 16 38 H 0.39 7.03 7.48 -74.06 -0.55 6.47 16 39 H 0.11 1.77 7.03 -2.39 -0.02 1.76 16 40 H 0.10 1.29 6.37 -2.39 -0.02 1.27 16 41 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.11 0.80 8.14 -2.38 -0.02 0.78 16 43 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.08 2.27 2.05 -2.39 0.00 2.26 16 45 H 0.07 2.26 8.10 -2.38 -0.02 2.24 16 46 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 47 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 48 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 49 H 0.07 3.34 6.15 -2.39 -0.01 3.33 16 50 H 0.26 14.05 8.31 -92.71 -0.77 13.28 16 51 H 0.05 2.10 8.10 -2.39 -0.02 2.08 16 52 H 0.05 1.90 4.85 -2.39 -0.01 1.89 16 Total: -1.00 -67.50 389.52 1.74 -65.75 By element: Atomic # 1 Polarization: 25.09 SS G_CDS: 0.41 Total: 25.50 kcal Atomic # 6 Polarization: -17.62 SS G_CDS: 7.00 Total: -10.62 kcal Atomic # 7 Polarization: -106.16 SS G_CDS: -5.83 Total: -111.99 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: -1.86 Total: -12.91 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.26 kcal Total: -67.50 1.74 -65.75 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344027350.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.847 kcal (2) G-P(sol) polarization free energy of solvation -67.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds