Wall clock time and date at job start Wed Apr 1 2020 05:15:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50698 * 119.99796 * 2 1 4 4 C 1.50698 * 119.99979 * 180.02562 * 2 1 3 5 5 N 1.46496 * 109.47343 * 94.99983 * 4 2 1 6 6 C 1.36744 * 127.13735 * 265.69672 * 5 4 2 7 7 C 1.50708 * 126.34442 * 359.96654 * 6 5 4 8 8 H 1.08997 * 109.47012 * 15.28414 * 7 6 5 9 9 O 1.42900 * 109.47039 * 135.28553 * 7 6 5 10 10 C 1.53005 * 109.46664 * 255.28509 * 7 6 5 11 11 C 1.52999 * 117.49472 * 248.62125 * 10 7 6 12 12 C 1.52996 * 117.49288 * 179.97438 * 10 7 6 13 13 N 1.30288 * 107.30660 * 180.22477 * 6 5 4 14 14 N 1.28530 * 110.05637 * 359.77603 * 13 6 5 15 15 C 1.31219 * 109.85894 * 359.97438 * 14 13 6 16 16 N 1.38578 * 126.47399 * 179.97438 * 15 14 13 17 17 C 1.46853 * 110.99967 * 271.79652 * 16 15 14 18 18 C 1.53030 * 109.52272 * 185.84019 * 17 16 15 19 19 C 1.53118 * 109.27889 * 300.81795 * 18 17 16 20 20 C 1.53118 * 109.15961 * 57.65740 * 19 18 17 21 21 H 1.09004 * 109.50445 * 62.28608 * 20 19 18 22 22 C 1.50698 * 109.50823 * 182.40545 * 20 19 18 23 23 H 1.07992 * 120.00400 * 119.79956 * 22 20 19 24 24 C 1.37884 * 119.99834 * 299.80523 * 22 20 19 25 25 N 1.31514 * 119.99624 * 359.97438 * 24 22 20 26 26 Si 1.86799 * 120.00014 * 179.97438 * 24 22 20 27 27 H 1.48494 * 109.47193 * 59.99781 * 26 24 22 28 28 H 1.48497 * 109.46983 * 179.97438 * 26 24 22 29 29 H 1.48500 * 109.47116 * 299.99542 * 26 24 22 30 30 C 1.46842 * 111.00079 * 36.00511 * 16 15 14 31 31 H 1.07999 * 120.00032 * 359.97438 * 1 2 3 32 32 H 1.08003 * 119.99648 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.46829 * 180.02562 * 3 2 1 34 34 H 1.08999 * 109.47062 * 299.99922 * 3 2 1 35 35 H 1.09003 * 109.47361 * 60.00453 * 3 2 1 36 36 H 1.09003 * 109.47161 * 334.99735 * 4 2 1 37 37 H 1.09004 * 109.47098 * 214.99721 * 4 2 1 38 38 H 0.96700 * 113.99927 * 59.99601 * 9 7 6 39 39 H 1.08996 * 115.55222 * 34.33175 * 10 7 6 40 40 H 1.08994 * 117.50045 * 359.97438 * 11 10 7 41 41 H 1.08995 * 117.49493 * 145.02564 * 11 10 7 42 42 H 1.09001 * 117.50185 * 214.97582 * 12 10 7 43 43 H 1.08996 * 117.50137 * 0.02562 * 12 10 7 44 44 H 1.09006 * 109.46154 * 305.85701 * 17 16 15 45 45 H 1.08998 * 109.46051 * 65.82108 * 17 16 15 46 46 H 1.09000 * 109.50435 * 180.88048 * 18 17 16 47 47 H 1.09001 * 109.53614 * 60.78085 * 18 17 16 48 48 H 1.09000 * 109.52640 * 297.75481 * 19 18 17 49 49 H 1.09004 * 109.52315 * 177.55669 * 19 18 17 50 50 H 0.97004 * 119.99852 * 179.97438 * 25 24 22 51 51 H 1.08995 * 109.46397 * 294.17829 * 30 16 15 52 52 H 1.08999 * 109.45898 * 54.15512 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 7 2.4119 -1.6672 -1.3766 6 6 1.7069 -2.4807 -2.2200 7 6 0.4107 -3.1830 -1.9072 8 1 -0.0327 -2.7458 -1.0127 9 8 -0.4894 -3.0337 -3.0069 10 6 0.6813 -4.6698 -1.6677 11 6 0.1514 -5.6604 -2.7064 12 6 -0.5166 -5.5607 -1.3329 13 7 2.3664 -2.5405 -3.3420 14 7 3.4294 -1.8219 -3.2674 15 6 3.5055 -1.2601 -2.0840 16 7 4.5101 -0.4177 -1.6350 17 6 5.6094 -1.1835 -1.0336 18 6 6.6284 -0.2202 -0.4208 19 6 7.1663 0.7085 -1.5129 20 6 5.9964 1.4584 -2.1560 21 1 5.5049 2.0779 -1.4058 22 6 6.5105 2.3310 -3.2719 23 1 6.1590 2.1794 -4.2817 24 6 7.4299 3.3230 -3.0037 25 7 7.8577 3.5079 -1.7739 26 14 8.0677 4.4042 -4.3870 27 1 6.9322 5.1273 -5.0138 28 1 9.0381 5.3863 -3.8404 29 1 8.7394 3.5587 -5.4065 30 6 4.9956 0.4464 -2.7184 31 1 -0.5400 0.9353 0.0004 32 1 -0.5400 -0.9354 -0.0004 33 1 3.1351 1.1059 -0.0005 34 1 1.8001 1.8767 -0.8900 35 1 1.8002 1.8767 0.8900 36 1 1.4386 -2.0856 0.4334 37 1 2.9742 -1.1991 0.5889 38 1 -0.1591 -3.4011 -3.8382 39 1 1.6317 -4.9035 -1.1879 40 1 -0.3903 -5.2530 -3.5599 41 1 0.7532 -6.5460 -2.9101 42 1 -0.3541 -6.3809 -0.6335 43 1 -1.4974 -5.0878 -1.2836 44 1 5.2139 -1.8369 -0.2558 45 1 6.0950 -1.7859 -1.8014 46 1 7.4519 -0.7884 0.0117 47 1 6.1474 0.3729 0.3569 48 1 7.6819 0.1191 -2.2711 49 1 7.8602 1.4248 -1.0728 50 1 8.5047 4.2055 -1.5852 51 1 5.4841 -0.1635 -3.4783 52 1 4.1544 0.9771 -3.1643 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001344027354.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:59 Heat of formation + Delta-G solvation = 61.225601 kcal Electronic energy + Delta-G solvation = -32111.554970 eV Core-core repulsion = 28113.081794 eV Total energy + Delta-G solvation = -3998.473177 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -44.12306 -40.09746 -39.52264 -37.86688 -36.10079 -35.71565 -34.47572 -33.70147 -31.84308 -31.13781 -28.48804 -28.19522 -27.61508 -27.02087 -25.40656 -23.43994 -23.26434 -22.75174 -22.28256 -21.47257 -20.36096 -19.87657 -18.81200 -18.29359 -17.86401 -17.31829 -17.19926 -17.11036 -16.48821 -16.00473 -15.75363 -15.40303 -15.31249 -15.13891 -14.87787 -14.64102 -14.46310 -14.23950 -14.07468 -13.90985 -13.53564 -13.16357 -12.92142 -12.87238 -12.82706 -12.73887 -12.66360 -12.62175 -12.35483 -12.34125 -11.96126 -11.83561 -11.74599 -11.64191 -11.41018 -11.33143 -11.12973 -11.08650 -11.02358 -10.81009 -10.41953 -10.35294 -10.20771 -9.52150 -8.10839 -6.23396 0.54721 0.84140 1.41178 1.41645 1.49020 1.54561 1.68843 2.41403 2.68990 2.81970 3.07130 3.16961 3.32036 3.55531 3.65538 3.72710 3.81940 3.84688 4.03316 4.06036 4.12167 4.16939 4.32173 4.33852 4.34834 4.40043 4.49069 4.55432 4.65046 4.75972 4.78673 4.79072 4.83502 4.86717 4.92549 4.98473 4.99563 5.01628 5.07365 5.18306 5.18820 5.27886 5.30248 5.42068 5.54281 5.57325 5.62731 5.71207 5.79524 5.99357 6.11732 6.27275 6.37618 6.45016 6.84868 7.43782 7.63701 8.93718 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016083 B = 0.002918 C = 0.002814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.542899 B = 9592.197185 C = 9949.026157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.161 4.161 3 C -0.118 4.118 4 C 0.140 3.860 5 N -0.452 5.452 6 C 0.153 3.847 7 C 0.240 3.760 8 H 0.136 0.864 9 O -0.548 6.548 10 C -0.198 4.198 11 C -0.175 4.175 12 C -0.145 4.145 13 N -0.310 5.310 14 N -0.358 5.358 15 C 0.360 3.640 16 N -0.452 5.452 17 C 0.074 3.926 18 C -0.103 4.103 19 C -0.107 4.107 20 C 0.064 3.936 21 H 0.010 0.990 22 C -0.541 4.541 23 H 0.043 0.957 24 C 0.024 3.976 25 N -0.908 5.908 26 Si 0.948 3.052 27 H -0.275 1.275 28 H -0.279 1.279 29 H -0.275 1.275 30 C 0.107 3.893 31 H 0.109 0.891 32 H 0.121 0.879 33 H 0.060 0.940 34 H 0.041 0.959 35 H 0.079 0.921 36 H 0.134 0.866 37 H 0.108 0.892 38 H 0.391 0.609 39 H 0.104 0.896 40 H 0.104 0.896 41 H 0.098 0.902 42 H 0.110 0.890 43 H 0.107 0.893 44 H 0.091 0.909 45 H 0.030 0.970 46 H 0.083 0.917 47 H 0.067 0.933 48 H 0.022 0.978 49 H 0.068 0.932 50 H 0.263 0.737 51 H 0.023 0.977 52 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.054 -16.418 9.517 25.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.162 4.162 3 C -0.175 4.175 4 C 0.020 3.980 5 N -0.145 5.145 6 C -0.116 4.116 7 C 0.178 3.822 8 H 0.154 0.846 9 O -0.354 6.354 10 C -0.217 4.217 11 C -0.212 4.212 12 C -0.182 4.182 13 N -0.150 5.150 14 N -0.202 5.202 15 C 0.003 3.997 16 N -0.177 5.177 17 C -0.052 4.052 18 C -0.141 4.141 19 C -0.145 4.145 20 C 0.045 3.955 21 H 0.028 0.972 22 C -0.579 4.579 23 H 0.062 0.938 24 C -0.176 4.176 25 N -0.547 5.547 26 Si 0.774 3.226 27 H -0.200 1.200 28 H -0.204 1.204 29 H -0.200 1.200 30 C -0.020 4.020 31 H 0.128 0.872 32 H 0.139 0.861 33 H 0.079 0.921 34 H 0.060 0.940 35 H 0.098 0.902 36 H 0.152 0.848 37 H 0.126 0.874 38 H 0.243 0.757 39 H 0.122 0.878 40 H 0.122 0.878 41 H 0.116 0.884 42 H 0.128 0.872 43 H 0.125 0.875 44 H 0.109 0.891 45 H 0.048 0.952 46 H 0.101 0.899 47 H 0.085 0.915 48 H 0.041 0.959 49 H 0.087 0.913 50 H 0.072 0.928 51 H 0.042 0.958 52 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -17.122 -16.102 9.033 25.180 hybrid contribution 1.315 0.844 -0.858 1.783 sum -15.807 -15.258 8.176 23.442 Atomic orbital electron populations 1.24057 0.94447 1.03667 0.96742 1.21807 0.95896 0.94949 1.03502 1.20790 1.00753 0.94617 1.01316 1.21251 1.02624 0.96320 0.77845 1.46500 1.17060 1.36215 1.14718 1.26180 0.99828 0.97558 0.88038 1.19711 0.79972 0.91492 0.90995 0.84637 1.86545 1.43624 1.83917 1.21306 1.22822 1.00289 0.90858 1.07766 1.23040 1.03726 1.00374 0.94070 1.23050 0.96016 1.00920 0.98231 1.73757 1.02507 1.18145 1.20639 1.74610 1.15491 1.11883 1.18189 1.22701 0.91482 0.96837 0.88684 1.58888 1.09598 1.17365 1.31898 1.22184 0.90159 0.94998 0.97899 1.21581 0.97305 0.97031 0.98176 1.21512 0.99516 0.97069 0.96413 1.18543 0.91232 0.91256 0.94514 0.97183 1.21376 1.25220 1.16783 0.94542 0.93846 1.25563 0.96327 0.98100 0.97599 1.69974 1.31895 1.33044 1.19759 0.85765 0.78216 0.78764 0.79833 1.20048 1.20413 1.20005 1.21882 0.97172 0.93107 0.89863 0.87226 0.86120 0.92075 0.93975 0.90188 0.84830 0.87361 0.75733 0.87785 0.87804 0.88355 0.87176 0.87492 0.89052 0.95202 0.89871 0.91457 0.95932 0.91329 0.92820 0.95844 0.93992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.46 13.93 67.78 0.94 -1.52 16 2 C -0.16 -3.31 5.63 -16.49 -0.09 -3.41 16 3 C -0.12 -3.06 10.05 71.24 0.72 -2.34 16 4 C 0.14 2.66 5.98 85.63 0.51 3.18 16 5 N -0.45 -12.23 2.79 -518.90 -1.45 -13.68 16 6 C 0.15 4.11 6.91 137.64 0.95 5.06 16 7 C 0.24 4.29 3.65 29.85 0.11 4.40 16 8 H 0.14 1.79 6.19 -2.39 -0.01 1.78 16 9 O -0.55 -10.70 12.48 -148.98 -1.86 -12.56 16 10 C -0.20 -2.90 5.69 -10.79 -0.06 -2.96 16 11 C -0.18 -2.32 9.74 30.61 0.30 -2.02 16 12 C -0.15 -1.49 10.19 30.61 0.31 -1.17 16 13 N -0.31 -10.86 12.10 -49.53 -0.60 -11.46 16 14 N -0.36 -14.49 11.69 -58.00 -0.68 -15.17 16 15 C 0.36 12.85 6.71 260.11 1.75 14.60 16 16 N -0.45 -16.69 4.14 -706.16 -2.92 -19.62 16 17 C 0.07 2.45 5.40 86.32 0.47 2.91 16 18 C -0.10 -3.59 6.09 30.64 0.19 -3.41 16 19 C -0.11 -4.92 5.03 30.67 0.15 -4.77 16 20 C 0.06 3.19 2.26 -11.49 -0.03 3.17 16 21 H 0.01 0.55 8.14 -2.38 -0.02 0.53 16 22 C -0.54 -30.41 8.56 25.60 0.22 -30.19 16 23 H 0.04 2.48 7.74 -2.91 -0.02 2.45 16 24 C 0.02 1.32 5.30 84.66 0.45 1.77 16 25 N -0.91 -51.30 11.36 21.45 0.24 -51.06 16 26 Si 0.95 44.12 29.54 68.60 2.03 46.15 16 27 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 28 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 29 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 30 C 0.11 4.86 4.31 86.33 0.37 5.23 16 31 H 0.11 1.71 8.05 -2.91 -0.02 1.69 16 32 H 0.12 1.38 6.99 -2.91 -0.02 1.36 16 33 H 0.06 1.86 7.46 -2.38 -0.02 1.85 16 34 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.08 1.74 8.14 -2.39 -0.02 1.73 16 36 H 0.13 1.47 7.16 -2.39 -0.02 1.46 16 37 H 0.11 2.04 8.14 -2.38 -0.02 2.02 16 38 H 0.39 7.05 7.49 -74.06 -0.55 6.49 16 39 H 0.10 1.67 8.11 -2.39 -0.02 1.65 16 40 H 0.10 1.33 6.38 -2.39 -0.02 1.32 16 41 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.09 2.42 8.10 -2.38 -0.02 2.40 16 45 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 46 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 47 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 48 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 49 H 0.07 3.53 6.17 -2.39 -0.01 3.52 16 50 H 0.26 14.14 8.31 -92.71 -0.77 13.36 16 51 H 0.02 1.14 8.06 -2.39 -0.02 1.12 16 52 H 0.04 2.03 8.10 -2.39 -0.02 2.01 16 Total: -1.00 -69.05 414.74 2.38 -66.67 By element: Atomic # 1 Polarization: 21.83 SS G_CDS: 0.36 Total: 22.19 kcal Atomic # 6 Polarization: -18.73 SS G_CDS: 7.26 Total: -11.47 kcal Atomic # 7 Polarization: -105.58 SS G_CDS: -5.40 Total: -110.98 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: -1.86 Total: -12.56 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -69.05 2.38 -66.67 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344027354.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.897 kcal (2) G-P(sol) polarization free energy of solvation -69.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds