Wall clock time and date at job start Wed Apr 1 2020 04:38:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46897 * 109.47311 * 279.13286 * 3 2 1 5 5 C 1.46894 * 111.00047 * 293.95757 * 4 3 2 6 6 C 1.38577 * 111.00273 * 169.99975 * 4 3 2 7 7 N 1.31218 * 126.46894 * 18.63752 * 6 4 3 8 8 N 1.28532 * 109.86019 * 180.25709 * 7 6 4 9 9 C 1.30296 * 110.04859 * 359.74362 * 8 7 6 10 10 C 1.50703 * 126.34433 * 179.97438 * 9 8 7 11 11 C 1.52994 * 109.47146 * 114.14778 * 10 9 8 12 12 C 1.53008 * 109.46878 * 234.14721 * 10 9 8 13 13 C 1.50695 * 109.47221 * 354.14264 * 10 9 8 14 14 H 1.08003 * 120.00247 * 0.02562 * 13 10 9 15 15 C 1.37878 * 120.00110 * 180.02562 * 13 10 9 16 16 N 1.31515 * 119.99950 * 359.97438 * 15 13 10 17 17 Si 1.86804 * 119.99982 * 180.02562 * 15 13 10 18 18 H 1.48500 * 109.47184 * 89.99752 * 17 15 13 19 19 H 1.48500 * 109.46881 * 209.99912 * 17 15 13 20 20 H 1.48498 * 109.46901 * 329.99905 * 17 15 13 21 21 N 1.36450 * 126.47768 * 198.46466 * 6 4 3 22 22 C 1.46496 * 127.13246 * 0.02562 * 21 6 4 23 23 C 1.53000 * 109.47273 * 83.92282 * 22 21 6 24 24 H 1.09003 * 109.48666 * 55.63338 * 23 22 21 25 25 C 1.53094 * 109.48058 * 175.65943 * 23 22 21 26 26 C 1.53181 * 109.21424 * 177.56581 * 25 23 22 27 27 C 1.53187 * 109.02752 * 303.10745 * 26 25 23 28 28 C 1.53096 * 109.21192 * 56.89270 * 27 26 25 29 29 O 1.42904 * 109.48089 * 295.60166 * 23 22 21 30 30 H 4.40892 * 5.52140 * 179.97438 * 4 1 2 31 31 H 1.08998 * 109.46776 * 159.13666 * 3 2 1 32 32 H 1.08999 * 109.47243 * 39.13868 * 3 2 1 33 33 H 1.08997 * 109.47308 * 301.75351 * 5 4 3 34 34 H 1.09004 * 109.47079 * 61.75667 * 5 4 3 35 35 H 1.08997 * 109.47340 * 181.75487 * 5 4 3 36 36 H 1.08996 * 109.47610 * 53.72211 * 11 10 9 37 37 H 1.09004 * 109.47166 * 173.72440 * 11 10 9 38 38 H 1.08998 * 109.47124 * 293.71794 * 11 10 9 39 39 H 1.08996 * 109.46863 * 53.96891 * 12 10 9 40 40 H 1.09002 * 109.46971 * 173.97278 * 12 10 9 41 41 H 1.08997 * 109.47157 * 293.96974 * 12 10 9 42 42 H 0.97002 * 119.99753 * 179.97438 * 16 15 13 43 43 H 1.09003 * 109.47382 * 323.92315 * 22 21 6 44 44 H 1.08997 * 109.47273 * 203.92476 * 22 21 6 45 45 H 1.09002 * 109.52384 * 297.49601 * 25 23 22 46 46 H 1.08994 * 109.52418 * 57.62455 * 25 23 22 47 47 H 1.08994 * 109.54745 * 62.91558 * 26 25 23 48 48 H 1.08997 * 109.54269 * 183.18599 * 26 25 23 49 49 H 1.08993 * 109.47543 * 296.98497 * 27 26 25 50 50 H 1.08995 * 109.57900 * 176.85706 * 27 26 25 51 51 H 1.09006 * 109.47940 * 182.44520 * 28 27 26 52 52 H 1.08997 * 109.49405 * 62.40786 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1358 -0.2189 1.3674 5 6 2.7858 0.9100 2.2396 6 6 4.5027 -0.4471 1.3747 7 7 5.3485 -0.1475 0.4173 8 7 6.5360 -0.5041 0.7564 9 6 6.5189 -1.0429 1.9426 10 6 7.7067 -1.5880 2.6930 11 6 7.9586 -0.7352 3.9380 12 6 7.4258 -3.0324 3.1125 13 6 8.9229 -1.5507 1.8040 14 1 8.8439 -1.1698 0.7965 15 6 10.1367 -2.0026 2.2768 16 7 10.2331 -2.4659 3.5039 17 14 11.6444 -1.9556 1.1750 18 1 12.3426 -0.6563 1.3465 19 1 12.5621 -3.0632 1.5443 20 1 11.2271 -2.1101 -0.2417 21 7 5.2237 -1.0226 2.3801 22 6 4.7145 -1.5212 3.6601 23 6 4.1840 -2.9447 3.4783 24 1 4.9684 -3.5741 3.0579 25 6 3.7517 -3.5056 4.8356 26 6 3.1656 -4.9071 4.6383 27 6 2.0030 -4.8268 3.6441 28 6 2.5028 -4.2148 2.3328 29 8 3.0623 -2.9258 2.5931 30 1 -1.0500 0.0002 0.0001 31 1 3.0089 0.9611 -0.3660 32 1 3.0097 -0.7962 -0.6486 33 1 3.2093 1.8283 1.8329 34 1 1.7012 1.0035 2.2953 35 1 3.1871 0.7359 3.2380 36 1 7.0430 -0.6711 4.5259 37 1 8.7448 -1.1926 4.5388 38 1 8.2676 0.2656 3.6365 39 1 7.1416 -3.6162 2.2370 40 1 8.3223 -3.4616 3.5600 41 1 6.6136 -3.0483 3.8392 42 1 11.0870 -2.7843 3.8364 43 1 3.9085 -0.8746 4.0072 44 1 5.5195 -1.5245 4.3949 45 1 4.6154 -3.5621 5.4982 46 1 2.9971 -2.8538 5.2755 47 1 3.9347 -5.5721 4.2457 48 1 2.8043 -5.2889 5.5931 49 1 1.2122 -4.2022 4.0594 50 1 1.6149 -5.8275 3.4543 51 1 1.6695 -4.1155 1.6371 52 1 3.2651 -4.8608 1.8972 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001344281619.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:29 Heat of formation + Delta-G solvation = 101.613462 kcal Electronic energy + Delta-G solvation = -33093.517544 eV Core-core repulsion = 29096.795716 eV Total energy + Delta-G solvation = -3996.721828 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.28300 -39.33277 -37.65980 -35.82210 -34.54321 -33.58789 -32.88992 -31.42878 -31.09238 -28.56193 -27.74114 -27.28676 -25.95674 -25.29702 -24.60316 -24.15664 -22.60841 -21.69140 -20.43658 -20.18530 -19.14970 -18.03369 -16.88618 -16.32965 -16.21731 -15.98279 -15.64693 -15.35554 -14.94757 -14.75519 -14.57237 -14.36208 -14.22121 -13.45727 -13.38070 -13.27611 -12.92628 -12.74278 -12.66563 -12.52864 -12.37791 -11.89059 -11.87095 -11.43316 -11.31553 -11.18719 -11.07378 -10.95655 -10.82781 -10.67778 -10.64908 -10.52592 -10.36101 -10.28200 -10.12081 -10.04804 -9.95884 -9.73514 -9.42178 -9.28828 -9.03925 -8.66920 -8.38453 -7.66884 -6.02771 -4.07617 2.44482 2.49950 2.84324 3.08993 3.34712 3.40817 3.49187 3.73056 3.81974 4.08883 4.42160 4.45220 4.64245 4.74387 4.77514 4.89710 4.97951 5.05736 5.15782 5.26694 5.29772 5.31563 5.37169 5.44436 5.50444 5.58697 5.62564 5.67498 5.72549 5.76259 5.81964 5.86553 5.90706 5.93708 5.99629 6.02797 6.17334 6.19869 6.49552 6.56406 6.64945 6.66382 6.71713 6.89707 7.12701 7.27891 7.34512 7.35592 7.57925 7.64965 7.81817 7.84736 8.09787 8.32252 8.99827 9.55353 9.69226 11.01046 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010740 B = 0.004266 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2606.330845 B = 6562.627958 C = 8270.132692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.167 4.167 3 C 0.182 3.818 4 N -0.437 5.437 5 C 0.030 3.970 6 C 0.331 3.669 7 N -0.335 5.335 8 N -0.286 5.286 9 C 0.237 3.763 10 C 0.147 3.853 11 C -0.129 4.129 12 C -0.137 4.137 13 C -0.489 4.489 14 H 0.077 0.923 15 C 0.063 3.937 16 N -0.896 5.896 17 Si 0.899 3.101 18 H -0.281 1.281 19 H -0.288 1.288 20 H -0.272 1.272 21 N -0.472 5.472 22 C 0.121 3.879 23 C 0.072 3.928 24 H 0.074 0.926 25 C -0.147 4.147 26 C -0.120 4.120 27 C -0.154 4.154 28 C 0.062 3.938 29 O -0.351 6.351 30 H 0.216 0.784 31 H 0.074 0.926 32 H 0.105 0.895 33 H 0.037 0.963 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.006 0.994 37 H 0.095 0.905 38 H 0.036 0.964 39 H 0.027 0.973 40 H 0.100 0.900 41 H 0.014 0.986 42 H 0.260 0.740 43 H 0.090 0.910 44 H 0.115 0.885 45 H 0.077 0.923 46 H 0.071 0.929 47 H 0.065 0.935 48 H 0.066 0.934 49 H 0.069 0.931 50 H 0.068 0.932 51 H 0.090 0.910 52 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.487 -1.505 4.313 19.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.168 4.168 3 C 0.056 3.944 4 N -0.160 5.160 5 C -0.118 4.118 6 C -0.025 4.025 7 N -0.179 5.179 8 N -0.122 5.122 9 C -0.030 4.030 10 C 0.144 3.856 11 C -0.187 4.187 12 C -0.195 4.195 13 C -0.528 4.528 14 H 0.095 0.905 15 C -0.138 4.138 16 N -0.535 5.535 17 Si 0.727 3.273 18 H -0.207 1.207 19 H -0.214 1.214 20 H -0.197 1.197 21 N -0.166 5.166 22 C -0.003 4.003 23 C 0.013 3.987 24 H 0.092 0.908 25 C -0.186 4.186 26 C -0.157 4.157 27 C -0.192 4.192 28 C -0.015 4.015 29 O -0.269 6.269 30 H 0.233 0.767 31 H 0.092 0.908 32 H 0.123 0.877 33 H 0.056 0.944 34 H 0.098 0.902 35 H 0.086 0.914 36 H 0.025 0.975 37 H 0.113 0.887 38 H 0.055 0.945 39 H 0.046 0.954 40 H 0.118 0.882 41 H 0.033 0.967 42 H 0.070 0.930 43 H 0.108 0.892 44 H 0.133 0.867 45 H 0.096 0.904 46 H 0.090 0.910 47 H 0.083 0.917 48 H 0.085 0.915 49 H 0.087 0.913 50 H 0.087 0.913 51 H 0.108 0.892 52 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -18.109 -1.278 3.193 18.433 hybrid contribution 0.355 -0.197 0.611 0.734 sum -17.755 -1.475 3.804 18.217 Atomic orbital electron populations 1.24772 0.95691 1.02250 0.99651 1.22815 0.93968 0.99404 1.00568 1.18799 0.84218 1.03117 0.88310 1.58365 1.06005 1.40634 1.10991 1.22491 1.01983 0.90585 0.96744 1.22069 0.89781 1.01689 0.88962 1.74549 0.96838 1.22347 1.24206 1.74052 1.11757 1.15610 1.10796 1.26110 0.84496 0.99320 0.93096 1.16895 0.85732 0.91281 0.91717 1.21922 0.99363 0.99590 0.97856 1.22066 1.01391 0.97833 0.98214 1.21083 0.91090 1.40829 0.99810 0.90471 1.24859 0.98751 0.94949 0.95200 1.69780 1.25190 1.43122 1.15425 0.86456 0.82208 0.77462 0.81166 1.20709 1.21432 1.19681 1.46112 1.08222 1.46742 1.15516 1.21974 1.00084 0.94208 0.84046 1.22584 0.89542 0.96079 0.90527 0.90810 1.22128 1.01809 0.97196 0.97425 1.21543 0.97924 0.96737 0.99508 1.22184 0.98638 1.01317 0.97051 1.22490 0.97749 0.85471 0.95789 1.88146 1.46035 1.27381 1.65378 0.76718 0.90800 0.87670 0.94408 0.90198 0.91373 0.97521 0.88681 0.94505 0.95395 0.88191 0.96679 0.92978 0.89216 0.86701 0.90413 0.91009 0.91662 0.91492 0.91253 0.91304 0.89229 0.93689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.16 19.25 29.55 0.57 -1.59 16 2 C -0.17 -2.12 12.47 -37.12 -0.46 -2.58 16 3 C 0.18 2.60 4.87 -6.61 -0.03 2.57 16 4 N -0.44 -6.73 4.30 -185.75 -0.80 -7.53 16 5 C 0.03 0.38 9.23 60.06 0.55 0.94 16 6 C 0.33 6.28 6.45 -318.88 -2.06 4.22 16 7 N -0.34 -7.43 11.46 30.31 0.35 -7.08 16 8 N -0.29 -7.07 11.00 32.99 0.36 -6.71 16 9 C 0.24 5.39 6.34 -154.02 -0.98 4.41 16 10 C 0.15 3.44 0.47 -156.81 -0.07 3.37 16 11 C -0.13 -2.86 8.05 37.15 0.30 -2.56 16 12 C -0.14 -2.98 7.17 37.16 0.27 -2.72 16 13 C -0.49 -13.10 7.91 -34.44 -0.27 -13.37 16 14 H 0.08 2.21 6.95 -52.48 -0.36 1.84 16 15 C 0.06 1.64 5.13 -17.82 -0.09 1.55 16 16 N -0.90 -23.24 9.40 55.43 0.52 -22.72 16 17 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 21 N -0.47 -8.92 2.78 -114.09 -0.32 -9.24 16 22 C 0.12 1.82 4.80 -4.04 -0.02 1.80 16 23 C 0.07 1.01 2.29 -26.68 -0.06 0.94 16 24 H 0.07 1.21 6.19 -51.93 -0.32 0.89 16 25 C -0.15 -1.61 5.42 -26.59 -0.14 -1.76 16 26 C -0.12 -1.18 6.03 -26.54 -0.16 -1.34 16 27 C -0.15 -1.49 6.13 -26.58 -0.16 -1.65 16 28 C 0.06 0.74 6.84 37.21 0.25 1.00 16 29 O -0.35 -5.13 9.50 -35.23 -0.33 -5.47 16 30 H 0.22 1.44 7.80 -54.09 -0.42 1.02 16 31 H 0.07 1.04 8.11 -51.93 -0.42 0.62 16 32 H 0.11 1.62 8.02 -51.93 -0.42 1.21 16 33 H 0.04 0.49 8.13 -51.93 -0.42 0.07 16 34 H 0.08 0.89 7.34 -51.93 -0.38 0.51 16 35 H 0.07 0.85 6.32 -51.93 -0.33 0.52 16 36 H 0.01 0.11 5.75 -51.93 -0.30 -0.18 16 37 H 0.09 2.25 6.26 -51.93 -0.33 1.92 16 38 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.03 0.62 8.10 -51.93 -0.42 0.20 16 40 H 0.10 2.39 5.93 -51.93 -0.31 2.08 16 41 H 0.01 0.27 4.44 -51.93 -0.23 0.04 16 42 H 0.26 6.54 8.31 -40.82 -0.34 6.20 16 43 H 0.09 1.20 6.34 -51.93 -0.33 0.87 16 44 H 0.12 1.72 4.52 -51.93 -0.23 1.48 16 45 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 49 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 50 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 51 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 52 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 399.97 15.07 6.03 6.03 Total: -1.00 -30.13 399.97 -9.95 -40.08 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -8.16 Total: 3.26 kcal Atomic # 6 Polarization: -4.21 SS G_CDS: -2.57 Total: -6.78 kcal Atomic # 7 Polarization: -53.40 SS G_CDS: 0.12 Total: -53.28 kcal Atomic # 8 Polarization: -5.13 SS G_CDS: -0.33 Total: -5.47 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -30.13 -9.95 -40.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344281619.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.691 kcal (2) G-P(sol) polarization free energy of solvation -30.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds