Wall clock time and date at job start Wed Apr 1 2020 05:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50700 * 119.99843 * 2 1 4 4 C 1.50692 * 120.00190 * 180.02562 * 2 1 3 5 5 N 1.46507 * 109.47089 * 96.51119 * 4 2 1 6 6 C 1.36737 * 127.13088 * 265.28788 * 5 4 2 7 7 C 1.50698 * 126.35400 * 359.97438 * 6 5 4 8 8 C 1.52993 * 109.46951 * 274.27855 * 7 6 5 9 9 C 1.50701 * 109.47180 * 175.15876 * 8 7 6 10 10 H 1.08002 * 119.99669 * 359.97438 * 9 8 7 11 11 C 1.37875 * 120.00294 * 179.72183 * 9 8 7 12 12 N 1.31516 * 120.00166 * 179.97438 * 11 9 8 13 13 Si 1.86803 * 119.99907 * 359.97438 * 11 9 8 14 14 H 1.48504 * 109.46842 * 90.00192 * 13 11 9 15 15 H 1.48496 * 109.47345 * 209.99665 * 13 11 9 16 16 H 1.48492 * 109.47152 * 330.00119 * 13 11 9 17 17 N 1.30301 * 107.30332 * 179.73404 * 6 5 4 18 18 N 1.28534 * 110.05006 * 0.26596 * 17 6 5 19 19 C 1.31216 * 109.86161 * 359.97438 * 18 17 6 20 20 N 1.38583 * 126.47258 * 180.02562 * 19 18 17 21 21 C 1.46999 * 110.99930 * 260.93886 * 20 19 18 22 22 C 1.53069 * 109.52071 * 184.03764 * 21 20 19 23 23 O 1.43183 * 109.23613 * 301.36410 * 22 21 20 24 24 C 1.42669 * 113.43756 * 56.28583 * 23 22 21 25 25 C 1.53391 * 113.57094 * 76.34396 * 24 23 22 26 26 C 1.53851 * 86.96345 * 89.52652 * 25 24 23 27 27 C 1.53358 * 113.63031 * 174.31009 * 24 23 22 28 28 C 1.47171 * 111.00234 * 24.49433 * 20 19 18 29 29 H 1.07998 * 119.99750 * 185.24665 * 1 2 3 30 30 H 1.07998 * 120.00288 * 5.24707 * 1 2 3 31 31 H 1.08993 * 109.47507 * 274.99823 * 3 2 1 32 32 H 1.09008 * 109.47246 * 35.00104 * 3 2 1 33 33 H 1.08999 * 109.47450 * 154.99714 * 3 2 1 34 34 H 1.08999 * 109.47619 * 336.50840 * 4 2 1 35 35 H 1.09005 * 109.47418 * 216.50911 * 4 2 1 36 36 H 1.08995 * 109.47241 * 154.27180 * 7 6 5 37 37 H 1.09004 * 109.46624 * 34.27806 * 7 6 5 38 38 H 1.09000 * 109.47461 * 55.15628 * 8 7 6 39 39 H 1.09000 * 109.47420 * 295.15432 * 8 7 6 40 40 H 0.97004 * 120.00076 * 179.97438 * 12 11 9 41 41 H 1.08997 * 109.45975 * 304.05651 * 21 20 19 42 42 H 1.08994 * 109.45848 * 64.02279 * 21 20 19 43 43 H 1.08993 * 109.50814 * 181.43554 * 22 21 20 44 44 H 1.08998 * 109.54811 * 61.31800 * 22 21 20 45 45 H 1.09006 * 113.63289 * 204.03601 * 25 24 23 46 46 H 1.09002 * 113.64215 * 335.00772 * 25 24 23 47 47 H 1.09000 * 113.59938 * 270.57514 * 26 25 24 48 48 H 1.08996 * 113.60423 * 139.70210 * 26 25 24 49 49 H 1.09001 * 113.62952 * 25.04827 * 27 24 23 50 50 H 1.09002 * 113.63567 * 155.92258 * 27 24 23 51 51 H 1.09002 * 109.55032 * 299.74427 * 28 20 19 52 52 H 1.08999 * 109.55089 * 60.03035 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3050 -0.0006 5 7 2.4434 -1.6490 -1.3731 6 6 1.7618 -2.4573 -2.2402 7 6 0.4642 -3.1716 -1.9630 8 6 0.7545 -4.5109 -1.2827 9 6 -0.5445 -5.1711 -0.8984 10 1 -1.4833 -4.6839 -1.1171 11 6 -0.5348 -6.3995 -0.2723 12 7 -1.6684 -6.9754 0.0636 13 14 1.0887 -7.2457 0.0991 14 1 1.5650 -6.8341 1.4440 15 1 0.8973 -8.7180 0.0709 16 1 2.0941 -6.8576 -0.9224 17 7 2.4397 -2.4914 -3.3524 18 7 3.4979 -1.7696 -3.2459 19 6 3.5520 -1.2315 -2.0503 20 7 4.5445 -0.3930 -1.5684 21 6 5.5072 -1.1363 -0.7429 22 6 6.5284 -0.1639 -0.1474 23 8 7.1985 0.5250 -1.2087 24 6 6.3104 1.2114 -2.0894 25 6 5.7585 2.5189 -1.5074 26 6 6.9824 3.2156 -2.1269 27 6 7.0272 2.0627 -3.1446 28 6 5.2307 0.2999 -2.6707 29 1 -0.5399 -0.9314 0.0855 30 1 -0.5400 0.9313 -0.0855 31 1 2.1676 1.6646 -1.0237 32 1 1.5161 2.0407 0.5895 33 1 3.0517 1.1542 0.4343 34 1 1.4291 -2.0912 0.4087 35 1 2.9606 -1.2070 0.6109 36 1 -0.0616 -3.3471 -2.9015 37 1 -0.1555 -2.5584 -1.3086 38 1 1.3545 -4.3417 -0.3886 39 1 1.3008 -5.1567 -1.9701 40 1 -1.6616 -7.8398 0.5038 41 1 4.9779 -1.6456 0.0624 42 1 6.0231 -1.8717 -1.3602 43 1 7.2571 -0.7183 0.4439 44 1 6.0166 0.5578 0.4891 45 1 4.8105 2.8276 -1.9482 46 1 5.7476 2.5421 -0.4177 47 1 7.8478 3.2475 -1.4650 48 1 6.7541 4.1833 -2.5735 49 1 8.0365 1.7189 -3.3712 50 1 6.4307 2.2439 -4.0388 51 1 5.6904 -0.4338 -3.3328 52 1 4.5110 0.8977 -3.2300 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346296969.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:43 Heat of formation + Delta-G solvation = 66.285213 kcal Electronic energy + Delta-G solvation = -32184.311356 eV Core-core repulsion = 28186.057580 eV Total energy + Delta-G solvation = -3998.253775 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -44.12682 -41.56939 -38.20330 -37.87617 -36.63221 -35.96650 -34.49765 -33.74198 -31.32999 -30.59841 -28.68235 -28.20676 -27.55552 -27.08262 -26.72302 -24.80281 -23.39546 -23.18817 -21.86507 -21.48601 -20.15904 -19.76861 -19.02349 -18.41302 -17.55463 -17.48717 -17.08232 -16.38736 -16.36104 -16.28905 -15.96690 -15.64987 -15.48418 -15.28865 -15.08217 -15.01385 -14.88651 -14.62909 -14.27416 -14.04530 -13.54734 -13.27494 -13.22603 -13.02479 -12.94275 -12.83320 -12.72769 -12.53082 -12.41168 -12.25545 -12.17771 -12.06417 -11.88775 -11.83540 -11.68961 -11.62127 -11.45016 -11.14236 -11.09004 -10.80464 -10.73719 -10.33651 -10.18995 -9.54369 -8.32392 -6.36425 0.60458 0.79319 1.28775 1.34641 1.44460 1.51470 1.69269 2.31271 2.50305 2.59609 3.02652 3.35717 3.53750 3.54924 3.63333 3.67222 3.68589 3.73052 3.89718 3.91459 3.95178 4.10397 4.14471 4.26236 4.36001 4.38281 4.44249 4.46908 4.59827 4.62884 4.65475 4.72252 4.73890 4.79746 4.82510 4.85737 4.89181 4.96989 4.97847 5.10411 5.12455 5.14602 5.21684 5.26198 5.34617 5.38716 5.41307 5.47722 5.55930 5.58974 5.79003 6.08338 6.17593 6.21899 6.70441 7.28220 7.64792 8.83468 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015716 B = 0.003036 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.149837 B = 9221.779614 C = 9783.346139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.157 4.157 3 C -0.098 4.098 4 C 0.138 3.862 5 N -0.457 5.457 6 C 0.201 3.799 7 C -0.011 4.011 8 C 0.006 3.994 9 C -0.525 4.525 10 H 0.048 0.952 11 C 0.017 3.983 12 N -0.942 5.942 13 Si 0.937 3.063 14 H -0.260 1.260 15 H -0.283 1.283 16 H -0.263 1.263 17 N -0.328 5.328 18 N -0.353 5.353 19 C 0.350 3.650 20 N -0.433 5.433 21 C 0.017 3.983 22 C 0.073 3.927 23 O -0.368 6.368 24 C 0.091 3.909 25 C -0.144 4.144 26 C -0.128 4.128 27 C -0.124 4.124 28 C 0.061 3.939 29 H 0.095 0.905 30 H 0.121 0.879 31 H 0.053 0.947 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.100 0.900 35 H 0.117 0.883 36 H 0.087 0.913 37 H 0.092 0.908 38 H 0.018 0.982 39 H 0.009 0.991 40 H 0.268 0.732 41 H 0.095 0.905 42 H 0.038 0.962 43 H 0.126 0.874 44 H 0.080 0.920 45 H 0.092 0.908 46 H 0.077 0.923 47 H 0.083 0.917 48 H 0.083 0.917 49 H 0.075 0.925 50 H 0.104 0.896 51 H 0.042 0.958 52 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.734 23.946 3.219 29.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.158 4.158 3 C -0.155 4.155 4 C 0.017 3.983 5 N -0.149 5.149 6 C -0.068 4.068 7 C -0.050 4.050 8 C -0.033 4.033 9 C -0.563 4.563 10 H 0.066 0.934 11 C -0.181 4.181 12 N -0.582 5.582 13 Si 0.761 3.239 14 H -0.184 1.184 15 H -0.209 1.209 16 H -0.188 1.188 17 N -0.167 5.167 18 N -0.197 5.197 19 C -0.008 4.008 20 N -0.158 5.158 21 C -0.110 4.110 22 C -0.003 4.003 23 O -0.287 6.287 24 C 0.051 3.949 25 C -0.181 4.181 26 C -0.165 4.165 27 C -0.162 4.162 28 C -0.066 4.066 29 H 0.113 0.887 30 H 0.139 0.861 31 H 0.072 0.928 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.118 0.882 35 H 0.136 0.864 36 H 0.105 0.895 37 H 0.110 0.890 38 H 0.036 0.964 39 H 0.027 0.973 40 H 0.077 0.923 41 H 0.114 0.886 42 H 0.056 0.944 43 H 0.144 0.856 44 H 0.099 0.901 45 H 0.111 0.889 46 H 0.095 0.905 47 H 0.102 0.898 48 H 0.102 0.898 49 H 0.094 0.906 50 H 0.122 0.878 51 H 0.060 0.940 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 18.055 23.808 2.184 29.960 hybrid contribution -0.281 -1.557 0.768 1.759 sum 17.774 22.251 2.952 28.631 Atomic orbital electron populations 1.24109 0.95348 1.03215 0.97294 1.21874 0.95541 0.95335 1.03029 1.20688 1.00283 0.92792 1.01697 1.21142 1.02227 0.96768 0.78157 1.46367 1.17211 1.36717 1.14614 1.25226 0.98948 0.95863 0.86717 1.19973 0.87476 0.95065 1.02535 1.19372 0.96025 0.92669 0.95186 1.21257 0.92834 1.04095 1.38110 0.93365 1.25780 0.99418 0.97820 0.95106 1.70023 1.27952 1.17640 1.42570 0.85858 0.80534 0.77892 0.79586 1.18444 1.20871 1.18782 1.73949 1.03018 1.18310 1.21458 1.74440 1.15717 1.12064 1.17434 1.22601 0.90872 0.97760 0.89534 1.59153 1.10639 1.24027 1.21961 1.23052 0.93809 0.96722 0.97421 1.22806 0.94660 0.93918 0.88963 1.87984 1.32489 1.67510 1.40703 1.22481 0.89518 0.90279 0.92642 1.23340 0.98836 0.94357 1.01592 1.22773 0.98226 0.97725 0.97759 1.23020 1.01424 0.94973 0.96802 1.22618 0.96067 0.96814 0.91124 0.88687 0.86095 0.92790 0.90472 0.90676 0.88219 0.86449 0.89480 0.89002 0.96354 0.97259 0.92339 0.88629 0.94393 0.85612 0.90135 0.88926 0.90466 0.89849 0.89842 0.90603 0.87786 0.93975 0.89219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.37 13.90 67.78 0.94 -2.43 16 2 C -0.16 -3.22 5.63 -16.49 -0.09 -3.31 16 3 C -0.10 -1.55 10.03 71.24 0.71 -0.84 16 4 C 0.14 3.26 6.16 85.63 0.53 3.79 16 5 N -0.46 -13.97 2.79 -518.90 -1.45 -15.42 16 6 C 0.20 7.57 7.32 137.64 1.01 8.58 16 7 C -0.01 -0.42 5.26 29.85 0.16 -0.26 16 8 C 0.01 0.28 4.02 29.85 0.12 0.40 16 9 C -0.52 -28.84 9.66 25.60 0.25 -28.60 16 10 H 0.05 2.85 7.99 -2.91 -0.02 2.83 16 11 C 0.02 0.96 5.47 84.65 0.46 1.42 16 12 N -0.94 -57.13 13.96 21.45 0.30 -56.83 16 13 Si 0.94 43.80 27.47 68.60 1.88 45.68 16 14 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 15 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 16 H -0.26 -12.15 6.53 99.48 0.65 -11.50 16 17 N -0.33 -13.77 12.18 -49.54 -0.60 -14.37 16 18 N -0.35 -13.46 11.41 -58.01 -0.66 -14.12 16 19 C 0.35 10.70 6.88 260.11 1.79 12.49 16 20 N -0.43 -9.70 4.75 -705.37 -3.35 -13.05 16 21 C 0.02 0.34 5.53 86.31 0.48 0.82 16 22 C 0.07 1.02 6.90 72.01 0.50 1.52 16 23 O -0.37 -6.65 10.50 -148.98 -1.56 -8.21 16 24 C 0.09 1.50 1.11 -10.61 -0.01 1.49 16 25 C -0.14 -1.80 7.27 31.01 0.23 -1.57 16 26 C -0.13 -1.40 8.02 31.17 0.25 -1.15 16 27 C -0.12 -1.68 7.47 31.00 0.23 -1.45 16 28 C 0.06 1.32 4.35 86.18 0.37 1.70 16 29 H 0.09 2.25 7.12 -2.91 -0.02 2.22 16 30 H 0.12 2.07 8.05 -2.91 -0.02 2.05 16 31 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.08 0.99 8.10 -2.38 -0.02 0.97 16 33 H 0.07 1.06 8.05 -2.39 -0.02 1.04 16 34 H 0.10 2.57 7.53 -2.39 -0.02 2.55 16 35 H 0.12 2.19 7.10 -2.38 -0.02 2.17 16 36 H 0.09 3.51 8.14 -2.39 -0.02 3.49 16 37 H 0.09 3.26 7.17 -2.38 -0.02 3.25 16 38 H 0.02 0.80 7.54 -2.39 -0.02 0.78 16 39 H 0.01 0.45 7.18 -2.39 -0.02 0.43 16 40 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 41 H 0.10 1.70 7.13 -2.39 -0.02 1.68 16 42 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.13 1.25 8.14 -2.39 -0.02 1.24 16 44 H 0.08 0.90 7.41 -2.39 -0.02 0.88 16 45 H 0.09 1.13 8.01 -2.38 -0.02 1.11 16 46 H 0.08 0.92 7.44 -2.39 -0.02 0.90 16 47 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 48 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 49 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 50 H 0.10 1.23 8.09 -2.39 -0.02 1.21 16 51 H 0.04 1.11 7.91 -2.39 -0.02 1.09 16 52 H 0.09 1.97 8.02 -2.39 -0.02 1.95 16 Total: -1.00 -70.77 413.92 3.31 -67.46 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: 0.84 Total: 16.29 kcal Atomic # 6 Polarization: -15.35 SS G_CDS: 7.92 Total: -7.43 kcal Atomic # 7 Polarization: -108.03 SS G_CDS: -5.77 Total: -113.79 kcal Atomic # 8 Polarization: -6.65 SS G_CDS: -1.56 Total: -8.21 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 1.88 Total: 45.68 kcal Total: -70.77 3.31 -67.46 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346296969.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.747 kcal (2) G-P(sol) polarization free energy of solvation -70.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds