Wall clock time and date at job start Wed Apr 1 2020 04:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50698 * 119.99562 * 2 1 4 4 N 1.46508 * 109.46797 * 125.43149 * 3 2 1 5 5 C 1.36461 * 127.12929 * 275.96519 * 4 3 2 6 6 N 1.38574 * 126.47898 * 0.02562 * 5 4 3 7 7 C 1.46989 * 110.99884 * 103.39622 * 6 5 4 8 8 C 1.53066 * 109.52249 * 184.04106 * 7 6 5 9 9 O 1.43183 * 109.23607 * 301.36274 * 8 7 6 10 10 C 1.42664 * 113.43438 * 56.28340 * 9 8 7 11 11 C 1.53400 * 113.57283 * 76.35068 * 10 9 8 12 12 C 1.53845 * 86.96588 * 89.52268 * 11 10 9 13 13 C 1.53368 * 113.62936 * 174.30863 * 10 9 8 14 14 C 1.47166 * 111.00324 * 226.95404 * 6 5 4 15 15 N 1.31220 * 107.04510 * 180.02562 * 5 4 3 16 16 N 1.28521 * 109.86575 * 359.97438 * 15 5 4 17 17 C 1.30295 * 110.05390 * 359.71832 * 16 15 5 18 18 C 1.50699 * 126.35041 * 180.31294 * 17 16 15 19 19 C 1.52995 * 109.46951 * 359.03221 * 18 17 16 20 20 C 1.53000 * 109.47310 * 119.02815 * 18 17 16 21 21 C 1.50693 * 109.47363 * 239.02879 * 18 17 16 22 22 H 1.08008 * 120.00167 * 0.02562 * 21 18 17 23 23 C 1.37872 * 120.00432 * 179.97438 * 21 18 17 24 24 N 1.31517 * 119.99875 * 359.97438 * 23 21 18 25 25 Si 1.86799 * 120.00249 * 180.02562 * 23 21 18 26 26 H 1.48498 * 109.47185 * 90.00088 * 25 23 21 27 27 H 1.48506 * 109.46944 * 209.99827 * 25 23 21 28 28 H 1.48496 * 109.47434 * 329.99760 * 25 23 21 29 29 H 1.08000 * 120.00189 * 359.97438 * 1 2 3 30 30 H 1.08004 * 119.99988 * 179.97438 * 1 2 3 31 31 H 1.08000 * 120.00189 * 180.02562 * 2 1 3 32 32 H 1.08998 * 109.47611 * 5.43026 * 3 2 1 33 33 H 1.08999 * 109.47281 * 245.42347 * 3 2 1 34 34 H 1.08996 * 109.46412 * 304.05840 * 7 6 5 35 35 H 1.09001 * 109.46388 * 64.02527 * 7 6 5 36 36 H 1.08999 * 109.51062 * 181.43295 * 8 7 6 37 37 H 1.09005 * 109.55258 * 61.31254 * 8 7 6 38 38 H 1.09009 * 113.63038 * 204.04020 * 11 10 9 39 39 H 1.08993 * 113.63502 * 335.00436 * 11 10 9 40 40 H 1.08995 * 113.60751 * 270.57260 * 12 11 10 41 41 H 1.09004 * 113.60379 * 139.70736 * 12 11 10 42 42 H 1.09004 * 113.63327 * 25.05376 * 13 10 9 43 43 H 1.09005 * 113.63128 * 155.92255 * 13 10 9 44 44 H 1.08998 * 109.55084 * 299.73988 * 14 6 5 45 45 H 1.09000 * 109.55535 * 60.03101 * 14 6 5 46 46 H 1.08996 * 109.47642 * 60.88138 * 19 18 17 47 47 H 1.09008 * 109.47272 * 180.88212 * 19 18 17 48 48 H 1.09002 * 109.47560 * 300.88132 * 19 18 17 49 49 H 1.09004 * 109.47041 * 66.49528 * 20 18 17 50 50 H 1.08993 * 109.47430 * 186.49964 * 20 18 17 51 51 H 1.09002 * 109.46913 * 306.50124 * 20 18 17 52 52 H 0.96999 * 120.00543 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 3.0010 1.3277 1.1255 5 6 2.7302 1.6779 2.4163 6 7 1.5048 2.0839 2.9200 7 6 0.8632 1.0018 3.6803 8 6 -0.5277 1.4509 4.1347 9 8 -0.4038 2.6291 4.9389 10 6 0.2750 3.6969 4.2799 11 6 -0.5880 4.4237 3.2406 12 6 -1.0352 5.3532 4.3820 13 6 0.2895 5.0040 5.0821 14 6 1.6496 3.2890 3.7521 15 7 3.8496 1.5576 3.0904 16 7 4.7890 1.1586 2.3094 17 6 4.3274 0.9962 1.1018 18 6 5.1108 0.5327 -0.0991 19 6 6.5678 0.2957 0.3029 20 6 4.5094 -0.7708 -0.6284 21 6 5.0516 1.5863 -1.1748 22 1 4.5019 2.5005 -1.0056 23 6 5.6999 1.3839 -2.3747 24 7 6.3705 0.2714 -2.5802 25 14 5.6270 2.6904 -3.7078 26 1 6.7610 3.6340 -3.5387 27 1 5.7167 2.0426 -5.0411 28 1 4.3453 3.4330 -3.6036 29 1 -0.5400 0.9353 0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3591 2.1313 0.0972 33 1 2.6152 1.4062 -0.9345 34 1 0.7712 0.1187 3.0481 35 1 1.4704 0.7616 4.5531 36 1 -0.9932 0.6579 4.7201 37 1 -1.1438 1.6688 3.2623 38 1 -0.0085 4.9286 2.4675 39 1 -1.3930 3.8107 2.8354 40 1 -1.9172 4.9974 4.9144 41 1 -1.1109 6.4001 4.0881 42 1 0.1900 4.8577 6.1577 43 1 1.1126 5.6687 4.8195 44 1 2.3135 3.0762 4.5900 45 1 2.0650 4.0988 3.1523 46 1 6.6120 -0.4776 1.0698 47 1 7.1380 -0.0246 -0.5692 48 1 6.9918 1.2203 0.6946 49 1 3.5113 -0.5772 -1.0213 50 1 5.1421 -1.1668 -1.4227 51 1 4.4462 -1.4971 0.1819 52 1 6.8269 0.1290 -3.4242 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001351840053.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:54 Heat of formation + Delta-G solvation = 92.370927 kcal Electronic energy + Delta-G solvation = -32858.218728 eV Core-core repulsion = 28861.096114 eV Total energy + Delta-G solvation = -3997.122614 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -42.32499 -40.59476 -37.09031 -36.12679 -35.62111 -34.95969 -32.27391 -31.47944 -30.13409 -28.71077 -26.78439 -26.01973 -25.97403 -25.68313 -25.35627 -23.83427 -22.17118 -21.84788 -20.43538 -19.78203 -19.23507 -18.77684 -17.23187 -16.69932 -16.35398 -15.93807 -15.66373 -15.30623 -14.98929 -14.93700 -14.71239 -14.48551 -14.31903 -14.02483 -13.50088 -13.46921 -13.22897 -12.64654 -12.52899 -12.14692 -11.90272 -11.73210 -11.63681 -11.48233 -11.36737 -11.32158 -11.16648 -11.06473 -10.98043 -10.93042 -10.78844 -10.60083 -10.37697 -10.33626 -10.21038 -9.84569 -9.75688 -9.57745 -9.49623 -9.36365 -9.08225 -8.67343 -8.51193 -8.02984 -6.18375 -4.30631 2.15064 2.44478 2.92297 3.18227 3.25999 3.27290 3.43446 3.62330 3.95528 4.25886 4.38055 4.52092 4.62310 4.68748 4.79194 4.97466 5.00194 5.06260 5.11298 5.16161 5.18569 5.37486 5.42245 5.51073 5.51470 5.57652 5.59255 5.67111 5.72407 5.76566 5.84863 5.89256 5.98766 6.00384 6.07276 6.10923 6.16575 6.54492 6.58483 6.63112 6.68588 6.71988 6.79104 6.90431 7.02191 7.05150 7.20624 7.27595 7.47578 7.53813 7.77071 7.87122 7.99938 8.16634 8.66139 9.35365 9.52122 10.82952 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014511 B = 0.003423 C = 0.003353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.121017 B = 8179.062075 C = 8348.508040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.160 4.160 3 C 0.136 3.864 4 N -0.453 5.453 5 C 0.303 3.697 6 N -0.449 5.449 7 C 0.029 3.971 8 C 0.068 3.932 9 O -0.357 6.357 10 C 0.097 3.903 11 C -0.151 4.151 12 C -0.136 4.136 13 C -0.123 4.123 14 C 0.055 3.945 15 N -0.319 5.319 16 N -0.314 5.314 17 C 0.252 3.748 18 C 0.145 3.855 19 C -0.118 4.118 20 C -0.132 4.132 21 C -0.516 4.516 22 H 0.055 0.945 23 C 0.075 3.925 24 N -0.877 5.877 25 Si 0.895 3.105 26 H -0.279 1.279 27 H -0.284 1.284 28 H -0.275 1.275 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.116 0.884 32 H 0.088 0.912 33 H 0.128 0.872 34 H 0.086 0.914 35 H 0.055 0.945 36 H 0.102 0.898 37 H 0.062 0.938 38 H 0.089 0.911 39 H 0.072 0.928 40 H 0.082 0.918 41 H 0.068 0.932 42 H 0.078 0.922 43 H 0.095 0.905 44 H 0.062 0.938 45 H 0.087 0.913 46 H 0.018 0.982 47 H 0.089 0.911 48 H 0.034 0.966 49 H 0.036 0.964 50 H 0.093 0.907 51 H 0.011 0.989 52 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.833 3.455 7.938 18.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.179 4.179 3 C 0.013 3.987 4 N -0.144 5.144 5 C -0.053 4.053 6 N -0.175 5.175 7 C -0.099 4.099 8 C -0.009 4.009 9 O -0.275 6.275 10 C 0.056 3.944 11 C -0.189 4.189 12 C -0.173 4.173 13 C -0.161 4.161 14 C -0.073 4.073 15 N -0.163 5.163 16 N -0.153 5.153 17 C -0.015 4.015 18 C 0.142 3.858 19 C -0.176 4.176 20 C -0.190 4.190 21 C -0.555 4.555 22 H 0.073 0.927 23 C -0.128 4.128 24 N -0.514 5.514 25 Si 0.722 3.278 26 H -0.204 1.204 27 H -0.210 1.210 28 H -0.199 1.199 29 H 0.116 0.884 30 H 0.117 0.883 31 H 0.133 0.867 32 H 0.106 0.894 33 H 0.146 0.854 34 H 0.104 0.896 35 H 0.074 0.926 36 H 0.120 0.880 37 H 0.080 0.920 38 H 0.108 0.892 39 H 0.090 0.910 40 H 0.101 0.899 41 H 0.087 0.913 42 H 0.097 0.903 43 H 0.114 0.886 44 H 0.081 0.919 45 H 0.106 0.894 46 H 0.037 0.963 47 H 0.107 0.893 48 H 0.053 0.947 49 H 0.055 0.945 50 H 0.111 0.889 51 H 0.030 0.970 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -15.133 3.530 8.747 17.832 hybrid contribution -0.374 0.380 -1.498 1.590 sum -15.507 3.910 7.249 17.558 Atomic orbital electron populations 1.23793 0.95501 1.01785 1.00581 1.23277 0.96117 0.98740 0.99725 1.21056 0.91608 0.95968 0.90043 1.46160 1.10301 1.49933 1.07960 1.22049 0.92603 1.06822 0.83859 1.58748 1.16058 1.05500 1.37160 1.22794 0.95812 0.93827 0.97458 1.22670 0.95098 0.87430 0.95657 1.87957 1.77151 1.22227 1.40212 1.22321 0.90585 0.87449 0.94031 1.23368 1.00049 0.98485 0.96977 1.22811 0.97452 0.99593 0.97457 1.22941 0.98666 0.94047 1.00420 1.22621 0.96689 0.91621 0.96321 1.74410 0.97002 1.18545 1.26366 1.74037 1.22187 1.19382 0.99682 1.26176 0.80447 0.96996 0.97928 1.16923 0.90562 0.93845 0.84449 1.21626 0.96860 0.98840 1.00264 1.21966 1.00498 0.96285 1.00279 1.20855 1.33915 1.02556 0.98185 0.92671 1.24830 0.94465 0.95477 0.98046 1.69811 1.32327 1.24343 1.24904 0.86549 0.78663 0.81619 0.80966 1.20447 1.20979 1.19946 0.88427 0.88350 0.86658 0.89370 0.85403 0.89604 0.92615 0.88027 0.91988 0.89245 0.90974 0.89919 0.91326 0.90323 0.88627 0.91925 0.89429 0.96303 0.89255 0.94652 0.94495 0.88885 0.97008 0.92537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.04 14.32 29.01 0.42 -1.63 16 2 C -0.16 -2.29 9.00 -36.03 -0.32 -2.62 16 3 C 0.14 2.25 5.71 -5.19 -0.03 2.22 16 4 N -0.45 -8.85 2.79 -115.36 -0.32 -9.17 16 5 C 0.30 5.75 6.61 -318.87 -2.11 3.64 16 6 N -0.45 -6.73 4.75 -174.31 -0.83 -7.56 16 7 C 0.03 0.38 5.53 -3.74 -0.02 0.36 16 8 C 0.07 0.72 6.90 37.19 0.26 0.98 16 9 O -0.36 -4.30 10.50 -35.23 -0.37 -4.67 16 10 C 0.10 1.10 1.11 -90.33 -0.10 1.00 16 11 C -0.15 -1.50 7.27 -26.08 -0.19 -1.69 16 12 C -0.14 -1.17 8.02 -25.85 -0.21 -1.38 16 13 C -0.12 -1.17 7.47 -26.10 -0.19 -1.36 16 14 C 0.06 0.77 4.59 -3.79 -0.02 0.75 16 15 N -0.32 -7.03 11.83 30.32 0.36 -6.67 16 16 N -0.31 -7.54 11.50 32.99 0.38 -7.16 16 17 C 0.25 5.72 6.28 -154.02 -0.97 4.76 16 18 C 0.15 3.41 0.50 -156.82 -0.08 3.33 16 19 C -0.12 -2.85 7.76 37.15 0.29 -2.56 16 20 C -0.13 -2.90 7.82 37.16 0.29 -2.61 16 21 C -0.52 -12.77 6.35 -34.45 -0.22 -12.99 16 22 H 0.06 1.39 7.44 -52.48 -0.39 1.00 16 23 C 0.08 1.86 5.15 -17.82 -0.09 1.76 16 24 N -0.88 -22.14 9.42 55.43 0.52 -21.62 16 25 Si 0.89 19.58 29.54 -169.99 -5.02 14.56 16 26 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 27 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 28 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 29 H 0.10 1.02 7.84 -52.49 -0.41 0.61 16 30 H 0.10 0.97 8.06 -52.48 -0.42 0.54 16 31 H 0.12 1.79 6.91 -52.49 -0.36 1.43 16 32 H 0.09 1.32 7.79 -51.93 -0.40 0.91 16 33 H 0.13 2.38 5.54 -51.93 -0.29 2.09 16 34 H 0.09 1.13 8.12 -51.93 -0.42 0.71 16 35 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.06 0.61 7.41 -51.93 -0.38 0.23 16 38 H 0.09 0.90 8.01 -51.92 -0.42 0.48 16 39 H 0.07 0.72 7.44 -51.93 -0.39 0.33 16 40 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.10 0.83 8.09 -51.93 -0.42 0.41 16 44 H 0.06 0.97 7.95 -51.93 -0.41 0.56 16 45 H 0.09 1.24 8.02 -51.93 -0.42 0.83 16 46 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.09 2.26 6.04 -51.92 -0.31 1.94 16 48 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 49 H 0.04 0.75 4.84 -51.93 -0.25 0.50 16 50 H 0.09 2.21 6.27 -51.93 -0.33 1.88 16 51 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 52 H 0.26 6.43 8.31 -40.82 -0.34 6.09 16 LS Contribution 401.26 15.07 6.05 6.05 Total: -1.00 -28.03 401.26 -11.08 -39.10 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: -8.55 Total: 5.18 kcal Atomic # 6 Polarization: -4.74 SS G_CDS: -3.30 Total: -8.04 kcal Atomic # 7 Polarization: -52.28 SS G_CDS: 0.11 Total: -52.17 kcal Atomic # 8 Polarization: -4.30 SS G_CDS: -0.37 Total: -4.67 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.02 Total: 14.56 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -28.03 -11.08 -39.10 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351840053.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.475 kcal (2) G-P(sol) polarization free energy of solvation -28.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds