Wall clock time and date at job start Wed Apr 1 2020 05:14:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47210 * 179.97438 * 2 1 4 4 H 1.08999 * 109.45143 * 156.70790 * 3 2 1 5 5 C 1.53033 * 109.46199 * 36.73876 * 3 2 1 6 6 C 1.53123 * 109.27667 * 180.80452 * 5 3 2 7 7 C 1.53121 * 109.16022 * 57.64921 * 6 5 3 8 8 C 1.53037 * 109.27960 * 302.34916 * 7 6 5 9 9 N 1.46842 * 109.52362 * 59.17907 * 8 7 6 10 10 C 1.38583 * 110.99904 * 174.16231 * 9 8 7 11 11 N 1.31216 * 126.47179 * 71.42311 * 10 9 8 12 12 N 1.28533 * 109.85791 * 179.73060 * 11 10 9 13 13 C 1.30296 * 110.05421 * 0.45441 * 12 11 10 14 14 C 1.50701 * 126.34708 * 179.81862 * 13 12 11 15 15 C 1.52995 * 109.47269 * 269.68710 * 14 13 12 16 16 H 1.09008 * 109.46682 * 55.00271 * 15 14 13 17 17 O 1.42896 * 109.47348 * 295.00508 * 15 14 13 18 18 C 1.50697 * 109.47350 * 174.99899 * 15 14 13 19 19 H 1.08002 * 119.99388 * 0.02562 * 18 15 14 20 20 C 1.37878 * 120.00376 * 180.02562 * 18 15 14 21 21 N 1.31512 * 119.99755 * 180.02562 * 20 18 15 22 22 Si 1.86802 * 119.99795 * 359.97438 * 20 18 15 23 23 H 1.48493 * 109.47142 * 270.00498 * 22 20 18 24 24 H 1.48499 * 109.46875 * 30.00358 * 22 20 18 25 25 H 1.48495 * 109.46891 * 149.99994 * 22 20 18 26 26 N 1.36455 * 126.47411 * 251.43025 * 10 9 8 27 27 C 1.46501 * 127.13235 * 359.97438 * 26 10 9 28 28 C 1.53003 * 109.47134 * 275.75352 * 27 26 10 29 29 C 1.52996 * 109.47046 * 174.36850 * 28 27 26 30 30 C 1.53005 * 109.46936 * 294.36656 * 28 27 26 31 31 H 4.18717 * 15.04145 * 359.97438 * 4 2 1 32 32 H 1.08994 * 109.50726 * 60.86075 * 5 3 2 33 33 H 1.09004 * 109.53446 * 300.75708 * 5 3 2 34 34 H 1.08996 * 109.52394 * 297.74696 * 6 5 3 35 35 H 1.08994 * 109.57495 * 177.58655 * 6 5 3 36 36 H 1.08998 * 109.50057 * 182.40345 * 7 6 5 37 37 H 1.09007 * 109.53400 * 62.31072 * 7 6 5 38 38 H 1.08999 * 109.45783 * 299.15979 * 8 7 6 39 39 H 1.09000 * 109.46322 * 179.19499 * 8 7 6 40 40 H 1.09004 * 109.46545 * 149.69429 * 14 13 12 41 41 H 1.08998 * 109.46995 * 29.69548 * 14 13 12 42 42 H 0.96697 * 114.00417 * 299.99301 * 17 15 14 43 43 H 0.97000 * 119.99437 * 179.97438 * 21 20 18 44 44 H 1.09000 * 109.47328 * 35.75627 * 27 26 10 45 45 H 1.09003 * 109.47044 * 155.75455 * 27 26 10 46 46 H 1.08993 * 109.47041 * 54.36699 * 28 27 26 47 47 H 1.08995 * 109.47798 * 59.99810 * 29 28 27 48 48 H 1.09004 * 109.47097 * 179.97438 * 29 28 27 49 49 H 1.09000 * 109.47245 * 299.99788 * 29 28 27 50 50 H 1.08995 * 109.46880 * 299.99560 * 30 28 27 51 51 H 1.08994 * 109.46800 * 60.00190 * 30 28 27 52 52 H 1.09004 * 109.46958 * 180.02562 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0086 0.9448 -0.4064 5 6 3.1564 -1.1554 -0.8631 6 6 4.6875 -1.1629 -0.8439 7 6 5.1714 -1.2827 0.6039 8 6 4.6025 -0.1229 1.4244 9 7 3.1353 -0.1602 1.3751 10 6 2.5858 0.7972 2.2130 11 7 2.5935 2.0957 2.0244 12 7 1.9898 2.6816 2.9962 13 6 1.5731 1.7996 3.8600 14 6 0.8255 2.0843 5.1372 15 6 1.8239 2.2764 6.2805 16 1 2.5381 3.0550 6.0122 17 8 2.5208 1.0512 6.5153 18 6 1.0850 2.6815 7.5299 19 1 0.0107 2.7906 7.5104 20 6 1.7805 2.9130 8.6977 21 7 1.1355 3.2660 9.7881 22 14 3.6385 2.7236 8.7314 23 1 3.9872 1.3261 9.0928 24 1 4.1928 3.0412 7.3909 25 1 4.2126 3.6530 9.7373 26 7 1.9347 0.5675 3.3900 27 6 1.6761 -0.7300 4.0191 28 6 0.4081 -1.3430 3.4213 29 6 0.2152 -2.7563 3.9746 30 6 -0.7996 -0.4804 3.7931 31 1 -1.0500 -0.0011 0.0000 32 1 2.8060 -1.0274 -1.8872 33 1 2.7830 -2.0993 -0.4659 34 1 5.0618 -0.2356 -1.2774 35 1 5.0558 -2.0101 -1.4223 36 1 6.2605 -1.2457 0.6278 37 1 4.8301 -2.2284 1.0252 38 1 4.9559 0.8218 1.0114 39 1 4.9335 -0.2133 2.4590 40 1 0.1669 1.2467 5.3670 41 1 0.2322 2.9906 5.0166 42 1 1.9465 0.3125 6.7593 43 1 1.6247 3.4284 10.6098 44 1 2.5207 -1.3954 3.8400 45 1 1.5424 -0.5933 5.0922 46 1 0.5027 -1.3874 2.3363 47 1 0.1206 -2.7121 5.0595 48 1 -0.6884 -3.1929 3.5490 49 1 1.0756 -3.3708 3.7097 50 1 -0.8942 -0.4362 4.8781 51 1 -0.6621 0.5264 3.3989 52 1 -1.7030 -0.9174 3.3676 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001357988638.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:46 Heat of formation + Delta-G solvation = 75.598505 kcal Electronic energy + Delta-G solvation = -32815.563356 eV Core-core repulsion = 28817.713436 eV Total energy + Delta-G solvation = -3997.849921 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.69803 -39.46103 -37.12251 -36.38692 -34.07057 -33.67507 -32.98501 -32.36334 -31.28209 -30.41071 -28.25231 -27.30306 -26.73278 -25.60700 -24.84546 -23.77323 -21.72896 -21.40059 -20.66196 -20.09507 -19.67683 -18.41198 -17.61082 -16.97833 -16.30124 -16.16416 -15.35709 -15.16305 -14.97410 -14.76832 -14.45895 -14.22344 -14.19009 -14.00717 -13.89502 -13.61011 -13.30481 -13.01636 -12.93076 -12.83076 -12.41970 -12.14228 -11.81922 -11.77535 -11.62023 -11.43555 -11.31986 -11.25434 -11.13565 -10.98490 -10.97009 -10.92872 -10.82108 -10.64715 -10.49743 -10.33198 -10.17000 -9.95808 -9.66678 -9.38875 -8.93126 -8.78457 -8.72573 -8.29482 -6.20582 -4.33660 2.07502 2.26677 2.75339 2.84349 3.23135 3.40912 3.44141 3.58205 3.76298 4.08274 4.44172 4.48770 4.58068 4.64444 4.70273 4.72924 4.81896 4.90506 4.95721 5.05443 5.07340 5.19500 5.27217 5.30166 5.37306 5.39538 5.45076 5.54362 5.55062 5.59851 5.61654 5.70776 5.73346 5.76485 5.77746 5.79705 5.81359 5.88235 5.95102 6.05157 6.07891 6.14353 6.17640 6.27409 6.40930 6.54405 6.58928 6.86518 7.23185 7.42019 7.49889 7.50852 8.16491 8.68311 8.84850 9.13772 9.42067 10.89331 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013537 B = 0.003699 C = 0.003395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.854983 B = 7567.104880 C = 8244.809805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.176 4.176 3 C 0.210 3.790 4 H 0.079 0.921 5 C -0.106 4.106 6 C -0.123 4.123 7 C -0.116 4.116 8 C 0.064 3.936 9 N -0.453 5.453 10 C 0.328 3.672 11 N -0.314 5.314 12 N -0.300 5.300 13 C 0.219 3.781 14 C -0.057 4.057 15 C 0.199 3.801 16 H 0.068 0.932 17 O -0.584 6.584 18 C -0.562 4.562 19 H 0.078 0.922 20 C 0.086 3.914 21 N -0.888 5.888 22 Si 0.912 3.088 23 H -0.279 1.279 24 H -0.268 1.268 25 H -0.304 1.304 26 N -0.448 5.448 27 C 0.119 3.881 28 C -0.109 4.109 29 C -0.142 4.142 30 C -0.152 4.152 31 H 0.215 0.785 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.053 0.947 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.101 0.899 42 H 0.355 0.645 43 H 0.267 0.733 44 H 0.091 0.909 45 H 0.100 0.900 46 H 0.080 0.920 47 H 0.060 0.940 48 H 0.058 0.942 49 H 0.056 0.944 50 H 0.063 0.937 51 H 0.055 0.945 52 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.954 -15.175 -19.628 24.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.176 4.176 3 C 0.103 3.897 4 H 0.096 0.904 5 C -0.144 4.144 6 C -0.160 4.160 7 C -0.154 4.154 8 C -0.063 4.063 9 N -0.179 5.179 10 C -0.029 4.029 11 N -0.158 5.158 12 N -0.140 5.140 13 C -0.048 4.048 14 C -0.097 4.097 15 C 0.141 3.859 16 H 0.086 0.914 17 O -0.391 6.391 18 C -0.599 4.599 19 H 0.096 0.904 20 C -0.119 4.119 21 N -0.525 5.525 22 Si 0.742 3.258 23 H -0.205 1.205 24 H -0.193 1.193 25 H -0.232 1.232 26 N -0.140 5.140 27 C -0.004 4.004 28 C -0.129 4.129 29 C -0.200 4.200 30 C -0.209 4.209 31 H 0.232 0.768 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.071 0.929 39 H 0.099 0.901 40 H 0.099 0.901 41 H 0.119 0.881 42 H 0.202 0.798 43 H 0.076 0.924 44 H 0.109 0.891 45 H 0.118 0.882 46 H 0.098 0.902 47 H 0.079 0.921 48 H 0.077 0.923 49 H 0.075 0.925 50 H 0.082 0.918 51 H 0.074 0.926 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.625 -13.889 -20.079 24.555 hybrid contribution 0.161 -0.848 0.692 1.107 sum 2.786 -14.738 -19.387 24.511 Atomic orbital electron populations 1.24792 0.95736 1.01157 0.98747 1.22529 0.93734 1.00087 1.01295 1.18535 0.84693 0.99486 0.86945 0.90371 1.21623 0.95794 0.97995 0.98954 1.21622 0.94965 1.02512 0.96907 1.21634 1.00247 0.98671 0.94850 1.22204 0.83567 0.98858 1.01643 1.58566 1.08324 1.44251 1.06758 1.21940 1.01495 0.90257 0.89195 1.74451 1.18779 1.02383 1.20198 1.74025 1.13874 1.25839 1.00249 1.25205 1.00699 0.79914 0.98992 1.21038 0.97907 1.03583 0.87159 1.19962 0.90679 0.83774 0.91509 0.91425 1.86481 1.40153 1.21418 1.91047 1.21437 0.95904 1.49344 0.93265 0.90427 1.24982 0.99334 0.92465 0.95162 1.69944 1.36700 1.44919 1.00932 0.86268 0.84678 0.77508 0.77382 1.20479 1.19314 1.23209 1.46145 1.41783 1.08489 1.17543 1.21971 0.98646 0.81327 0.98497 1.21481 0.94311 0.95584 1.01479 1.21744 1.01805 0.94979 1.01476 1.21959 0.97093 0.99823 1.02063 0.76771 0.90599 0.90513 0.91613 0.91048 0.90667 0.90753 0.92878 0.90097 0.90106 0.88087 0.79800 0.92386 0.89073 0.88151 0.90193 0.92074 0.92251 0.92482 0.91792 0.92601 0.92531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.19 18.72 29.55 0.55 -1.64 16 2 C -0.18 -2.26 11.31 -37.12 -0.42 -2.68 16 3 C 0.21 2.47 2.15 -70.51 -0.15 2.31 16 4 H 0.08 1.01 8.13 -51.93 -0.42 0.59 16 5 C -0.11 -0.88 5.33 -26.65 -0.14 -1.02 16 6 C -0.12 -0.85 6.00 -26.61 -0.16 -1.01 16 7 C -0.12 -0.90 6.09 -26.65 -0.16 -1.07 16 8 C 0.06 0.72 5.39 -3.84 -0.02 0.70 16 9 N -0.45 -5.81 4.51 -170.19 -0.77 -6.57 16 10 C 0.33 5.36 5.40 -318.87 -1.72 3.64 16 11 N -0.31 -6.13 12.06 30.32 0.37 -5.77 16 12 N -0.30 -6.34 12.18 32.99 0.40 -5.94 16 13 C 0.22 4.15 5.97 -154.02 -0.92 3.23 16 14 C -0.06 -1.08 4.69 -27.88 -0.13 -1.21 16 15 C 0.20 4.52 2.29 -27.89 -0.06 4.45 16 16 H 0.07 1.72 7.20 -51.92 -0.37 1.35 16 17 O -0.58 -12.41 10.06 -35.23 -0.35 -12.76 16 18 C -0.56 -14.91 9.34 -34.44 -0.32 -15.23 16 19 H 0.08 2.18 7.99 -52.49 -0.42 1.76 16 20 C 0.09 2.41 5.47 -17.82 -0.10 2.31 16 21 N -0.89 -26.30 13.96 55.43 0.77 -25.52 16 22 Si 0.91 23.00 26.18 -169.99 -4.45 18.55 16 23 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 24 H -0.27 -6.91 6.54 56.52 0.37 -6.54 16 25 H -0.30 -7.67 7.11 56.52 0.40 -7.26 16 26 N -0.45 -7.21 2.52 -114.08 -0.29 -7.49 16 27 C 0.12 1.53 5.36 -4.04 -0.02 1.51 16 28 C -0.11 -1.20 3.12 -90.62 -0.28 -1.49 16 29 C -0.14 -1.25 9.19 37.16 0.34 -0.91 16 30 C -0.15 -1.77 7.90 37.16 0.29 -1.48 16 31 H 0.22 1.88 7.80 -54.09 -0.42 1.46 16 32 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.08 0.99 8.10 -51.93 -0.42 0.57 16 40 H 0.08 1.36 5.55 -51.93 -0.29 1.07 16 41 H 0.10 1.96 8.14 -51.93 -0.42 1.54 16 42 H 0.36 6.38 7.68 45.56 0.35 6.73 16 43 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 44 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 45 H 0.10 1.31 5.36 -51.93 -0.28 1.03 16 46 H 0.08 0.97 7.22 -51.93 -0.38 0.60 16 47 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 49 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 50 H 0.06 0.75 7.30 -51.93 -0.38 0.37 16 51 H 0.05 0.78 6.47 -51.93 -0.34 0.44 16 52 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 408.91 15.07 6.16 6.16 Total: -1.00 -33.21 408.91 -9.61 -42.83 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: -8.03 Total: 6.10 kcal Atomic # 6 Polarization: -6.16 SS G_CDS: -3.43 Total: -9.58 kcal Atomic # 7 Polarization: -51.78 SS G_CDS: 0.49 Total: -51.29 kcal Atomic # 8 Polarization: -12.41 SS G_CDS: -0.35 Total: -12.76 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -4.45 Total: 18.55 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -33.21 -9.61 -42.83 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001357988638.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.424 kcal (2) G-P(sol) polarization free energy of solvation -33.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds