Wall clock time and date at job start Wed Apr 1 2020 05:14:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47210 * 179.97438 * 2 1 4 4 H 1.08999 * 109.45143 * 156.70790 * 3 2 1 5 5 C 1.53033 * 109.46199 * 36.73876 * 3 2 1 6 6 C 1.53123 * 109.27667 * 180.80452 * 5 3 2 7 7 C 1.53121 * 109.16022 * 57.64921 * 6 5 3 8 8 C 1.53037 * 109.27960 * 302.34916 * 7 6 5 9 9 N 1.46842 * 109.52362 * 59.17907 * 8 7 6 10 10 C 1.38583 * 110.99904 * 174.16231 * 9 8 7 11 11 N 1.31216 * 126.47179 * 71.42311 * 10 9 8 12 12 N 1.28533 * 109.85791 * 179.73060 * 11 10 9 13 13 C 1.30296 * 110.05421 * 0.45441 * 12 11 10 14 14 C 1.50701 * 126.34708 * 179.81862 * 13 12 11 15 15 C 1.52995 * 109.47269 * 269.68710 * 14 13 12 16 16 H 1.09008 * 109.46682 * 55.00271 * 15 14 13 17 17 O 1.42896 * 109.47348 * 295.00508 * 15 14 13 18 18 C 1.50697 * 109.47350 * 174.99899 * 15 14 13 19 19 H 1.08002 * 119.99388 * 0.02562 * 18 15 14 20 20 C 1.37878 * 120.00376 * 180.02562 * 18 15 14 21 21 N 1.31512 * 119.99755 * 180.02562 * 20 18 15 22 22 Si 1.86802 * 119.99795 * 359.97438 * 20 18 15 23 23 H 1.48493 * 109.47142 * 270.00498 * 22 20 18 24 24 H 1.48499 * 109.46875 * 30.00358 * 22 20 18 25 25 H 1.48495 * 109.46891 * 149.99994 * 22 20 18 26 26 N 1.36455 * 126.47411 * 251.43025 * 10 9 8 27 27 C 1.46501 * 127.13235 * 359.97438 * 26 10 9 28 28 C 1.53003 * 109.47134 * 275.75352 * 27 26 10 29 29 C 1.52996 * 109.47046 * 174.36850 * 28 27 26 30 30 C 1.53005 * 109.46936 * 294.36656 * 28 27 26 31 31 H 4.18717 * 15.04145 * 359.97438 * 4 2 1 32 32 H 1.08994 * 109.50726 * 60.86075 * 5 3 2 33 33 H 1.09004 * 109.53446 * 300.75708 * 5 3 2 34 34 H 1.08996 * 109.52394 * 297.74696 * 6 5 3 35 35 H 1.08994 * 109.57495 * 177.58655 * 6 5 3 36 36 H 1.08998 * 109.50057 * 182.40345 * 7 6 5 37 37 H 1.09007 * 109.53400 * 62.31072 * 7 6 5 38 38 H 1.08999 * 109.45783 * 299.15979 * 8 7 6 39 39 H 1.09000 * 109.46322 * 179.19499 * 8 7 6 40 40 H 1.09004 * 109.46545 * 149.69429 * 14 13 12 41 41 H 1.08998 * 109.46995 * 29.69548 * 14 13 12 42 42 H 0.96697 * 114.00417 * 299.99301 * 17 15 14 43 43 H 0.97000 * 119.99437 * 179.97438 * 21 20 18 44 44 H 1.09000 * 109.47328 * 35.75627 * 27 26 10 45 45 H 1.09003 * 109.47044 * 155.75455 * 27 26 10 46 46 H 1.08993 * 109.47041 * 54.36699 * 28 27 26 47 47 H 1.08995 * 109.47798 * 59.99810 * 29 28 27 48 48 H 1.09004 * 109.47097 * 179.97438 * 29 28 27 49 49 H 1.09000 * 109.47245 * 299.99788 * 29 28 27 50 50 H 1.08995 * 109.46880 * 299.99560 * 30 28 27 51 51 H 1.08994 * 109.46800 * 60.00190 * 30 28 27 52 52 H 1.09004 * 109.46958 * 180.02562 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0086 0.9448 -0.4064 5 6 3.1564 -1.1554 -0.8631 6 6 4.6875 -1.1629 -0.8439 7 6 5.1714 -1.2827 0.6039 8 6 4.6025 -0.1229 1.4244 9 7 3.1353 -0.1602 1.3751 10 6 2.5858 0.7972 2.2130 11 7 2.5935 2.0957 2.0244 12 7 1.9898 2.6816 2.9962 13 6 1.5731 1.7996 3.8600 14 6 0.8255 2.0843 5.1372 15 6 1.8239 2.2764 6.2805 16 1 2.5381 3.0550 6.0122 17 8 2.5208 1.0512 6.5153 18 6 1.0850 2.6815 7.5299 19 1 0.0107 2.7906 7.5104 20 6 1.7805 2.9130 8.6977 21 7 1.1355 3.2660 9.7881 22 14 3.6385 2.7236 8.7314 23 1 3.9872 1.3261 9.0928 24 1 4.1928 3.0412 7.3909 25 1 4.2126 3.6530 9.7373 26 7 1.9347 0.5675 3.3900 27 6 1.6761 -0.7300 4.0191 28 6 0.4081 -1.3430 3.4213 29 6 0.2152 -2.7563 3.9746 30 6 -0.7996 -0.4804 3.7931 31 1 -1.0500 -0.0011 0.0000 32 1 2.8060 -1.0274 -1.8872 33 1 2.7830 -2.0993 -0.4659 34 1 5.0618 -0.2356 -1.2774 35 1 5.0558 -2.0101 -1.4223 36 1 6.2605 -1.2457 0.6278 37 1 4.8301 -2.2284 1.0252 38 1 4.9559 0.8218 1.0114 39 1 4.9335 -0.2133 2.4590 40 1 0.1669 1.2467 5.3670 41 1 0.2322 2.9906 5.0166 42 1 1.9465 0.3125 6.7593 43 1 1.6247 3.4284 10.6098 44 1 2.5207 -1.3954 3.8400 45 1 1.5424 -0.5933 5.0922 46 1 0.5027 -1.3874 2.3363 47 1 0.1206 -2.7121 5.0595 48 1 -0.6884 -3.1929 3.5490 49 1 1.0756 -3.3708 3.7097 50 1 -0.8942 -0.4362 4.8781 51 1 -0.6621 0.5264 3.3989 52 1 -1.7030 -0.9174 3.3676 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001357988638.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:45 Heat of formation + Delta-G solvation = 55.396541 kcal Electronic energy + Delta-G solvation = -32816.439379 eV Core-core repulsion = 28817.713436 eV Total energy + Delta-G solvation = -3998.725944 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -44.06254 -40.37646 -38.57625 -37.77038 -34.95914 -34.62603 -34.49203 -34.16988 -32.75830 -31.23612 -29.86414 -28.25854 -27.78967 -27.28095 -25.82547 -24.55808 -23.42506 -22.56029 -21.95681 -20.99322 -20.76311 -19.62728 -19.25500 -18.20477 -17.50488 -17.35301 -17.00468 -16.50155 -16.18437 -15.94977 -15.77783 -15.60257 -15.21781 -15.00804 -14.91130 -14.83700 -14.56365 -14.35020 -14.05256 -13.79485 -13.67333 -13.45498 -13.07303 -12.94305 -12.86089 -12.76220 -12.57116 -12.50786 -12.41696 -12.06966 -12.00208 -11.92345 -11.82039 -11.76295 -11.64351 -11.52171 -11.37539 -11.34678 -11.13797 -10.89944 -10.87516 -10.68739 -10.00527 -9.78096 -8.38790 -6.53126 0.75008 1.14270 1.38237 1.39059 1.54812 1.75556 1.78103 1.83327 2.34361 2.74289 2.94770 3.21883 3.36121 3.60370 3.74376 3.75606 3.87189 3.92287 3.95031 3.99410 4.13232 4.13872 4.22450 4.25851 4.32698 4.36636 4.48304 4.51078 4.59841 4.64526 4.68422 4.78670 4.84446 4.86220 4.88199 4.94312 4.94750 4.96926 5.04440 5.13552 5.16277 5.17942 5.23213 5.31991 5.37544 5.38286 5.43910 5.45076 5.61464 5.66191 6.04526 6.23369 6.58591 6.59639 7.06710 7.26984 7.71511 8.74731 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013537 B = 0.003699 C = 0.003395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.854983 B = 7567.104880 C = 8244.809805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.208 4.208 3 C 0.207 3.793 4 H 0.060 0.940 5 C -0.097 4.097 6 C -0.119 4.119 7 C -0.107 4.107 8 C 0.061 3.939 9 N -0.445 5.445 10 C 0.345 3.655 11 N -0.350 5.350 12 N -0.338 5.338 13 C 0.211 3.789 14 C -0.042 4.042 15 C 0.213 3.787 16 H 0.039 0.961 17 O -0.584 6.584 18 C -0.557 4.557 19 H 0.055 0.945 20 C 0.041 3.959 21 N -0.929 5.929 22 Si 0.966 3.034 23 H -0.267 1.267 24 H -0.279 1.279 25 H -0.304 1.304 26 N -0.442 5.442 27 C 0.111 3.889 28 C -0.098 4.098 29 C -0.137 4.137 30 C -0.150 4.150 31 H 0.239 0.761 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.064 0.936 35 H 0.097 0.903 36 H 0.093 0.907 37 H 0.081 0.919 38 H 0.039 0.961 39 H 0.069 0.931 40 H 0.103 0.897 41 H 0.091 0.909 42 H 0.374 0.626 43 H 0.269 0.731 44 H 0.104 0.896 45 H 0.101 0.899 46 H 0.071 0.929 47 H 0.064 0.936 48 H 0.070 0.930 49 H 0.066 0.934 50 H 0.063 0.937 51 H 0.029 0.971 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.643 -18.389 -21.049 28.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.208 4.208 3 C 0.100 3.900 4 H 0.078 0.922 5 C -0.135 4.135 6 C -0.156 4.156 7 C -0.144 4.144 8 C -0.066 4.066 9 N -0.171 5.171 10 C -0.012 4.012 11 N -0.194 5.194 12 N -0.178 5.178 13 C -0.058 4.058 14 C -0.082 4.082 15 C 0.154 3.846 16 H 0.057 0.943 17 O -0.392 6.392 18 C -0.595 4.595 19 H 0.073 0.927 20 C -0.160 4.160 21 N -0.568 5.568 22 Si 0.795 3.205 23 H -0.192 1.192 24 H -0.204 1.204 25 H -0.232 1.232 26 N -0.133 5.133 27 C -0.011 4.011 28 C -0.117 4.117 29 C -0.194 4.194 30 C -0.208 4.208 31 H 0.255 0.745 32 H 0.106 0.894 33 H 0.099 0.901 34 H 0.083 0.917 35 H 0.115 0.885 36 H 0.111 0.889 37 H 0.100 0.900 38 H 0.057 0.943 39 H 0.087 0.913 40 H 0.122 0.878 41 H 0.110 0.890 42 H 0.223 0.777 43 H 0.078 0.922 44 H 0.122 0.878 45 H 0.119 0.881 46 H 0.090 0.910 47 H 0.083 0.917 48 H 0.089 0.911 49 H 0.085 0.915 50 H 0.082 0.918 51 H 0.048 0.952 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.311 -17.136 -21.503 27.694 hybrid contribution -0.115 0.122 1.061 1.074 sum 3.196 -17.014 -20.442 26.787 Atomic orbital electron populations 1.25483 0.96560 1.00287 0.97696 1.22990 0.94554 1.00984 1.02308 1.18695 0.84534 1.00282 0.86483 0.92243 1.21622 0.96738 0.96386 0.98719 1.21638 0.93810 1.03599 0.96577 1.21625 1.01089 0.97049 0.94676 1.22323 0.82541 1.00026 1.01694 1.58899 1.09098 1.42171 1.06976 1.22357 0.99658 0.90078 0.89117 1.74372 1.20264 1.04136 1.20591 1.73917 1.15031 1.27517 1.01337 1.24922 1.01209 0.80902 0.98767 1.20748 0.97038 1.04207 0.86171 1.19542 0.90195 0.83767 0.91082 0.94299 1.86399 1.40366 1.21328 1.91123 1.21693 0.95146 1.48154 0.94508 0.92653 1.25631 1.02658 0.92655 0.95100 1.70033 1.38131 1.46932 1.01670 0.85416 0.80628 0.77908 0.76557 1.19220 1.20423 1.23168 1.46269 1.40971 1.08703 1.17316 1.22300 1.00262 0.80062 0.98460 1.21400 0.92813 0.96700 1.00836 1.21715 1.02838 0.93258 1.01618 1.21939 0.98242 0.98626 1.01954 0.74484 0.89354 0.90091 0.91728 0.88500 0.88900 0.90000 0.94303 0.91277 0.87848 0.89017 0.77748 0.92163 0.87813 0.88126 0.91048 0.91729 0.91127 0.91482 0.91835 0.95206 0.90867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.08 18.72 74.32 1.39 -2.68 16 2 C -0.21 -5.16 11.31 31.13 0.35 -4.81 16 3 C 0.21 4.69 2.15 43.13 0.09 4.78 16 4 H 0.06 1.56 8.13 -2.39 -0.02 1.54 16 5 C -0.10 -1.38 5.33 30.65 0.16 -1.22 16 6 C -0.12 -1.31 6.00 30.68 0.18 -1.12 16 7 C -0.11 -1.38 6.09 30.65 0.19 -1.19 16 8 C 0.06 1.31 5.39 86.33 0.47 1.77 16 9 N -0.44 -11.02 4.51 -692.35 -3.12 -14.14 16 10 C 0.35 11.29 5.40 260.11 1.40 12.69 16 11 N -0.35 -14.04 12.06 -58.00 -0.70 -14.74 16 12 N -0.34 -14.72 12.18 -49.54 -0.60 -15.33 16 13 C 0.21 8.07 5.97 137.64 0.82 8.89 16 14 C -0.04 -1.60 4.69 29.85 0.14 -1.46 16 15 C 0.21 9.71 2.29 29.85 0.07 9.78 16 16 H 0.04 2.03 7.20 -2.38 -0.02 2.01 16 17 O -0.58 -24.06 10.06 -148.98 -1.50 -25.56 16 18 C -0.56 -29.87 9.34 25.60 0.24 -29.63 16 19 H 0.06 3.17 7.99 -2.91 -0.02 3.15 16 20 C 0.04 2.30 5.47 84.66 0.46 2.76 16 21 N -0.93 -55.62 13.96 21.45 0.30 -55.32 16 22 Si 0.97 47.52 26.18 68.60 1.80 49.32 16 23 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 24 H -0.28 -14.11 6.54 99.48 0.65 -13.46 16 25 H -0.30 -14.82 7.11 99.48 0.71 -14.11 16 26 N -0.44 -14.00 2.52 -514.84 -1.30 -15.30 16 27 C 0.11 2.66 5.36 86.38 0.46 3.12 16 28 C -0.10 -1.95 3.12 -10.79 -0.03 -1.98 16 29 C -0.14 -1.97 9.19 71.98 0.66 -1.30 16 30 C -0.15 -3.26 7.90 71.98 0.57 -2.69 16 31 H 0.24 3.73 7.80 -4.42 -0.03 3.70 16 32 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 34 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 38 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.07 1.64 8.10 -2.39 -0.02 1.62 16 40 H 0.10 3.43 5.55 -2.39 -0.01 3.41 16 41 H 0.09 3.67 8.14 -2.39 -0.02 3.65 16 42 H 0.37 12.63 7.68 -74.06 -0.57 12.06 16 43 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 44 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 45 H 0.10 2.41 5.36 -2.39 -0.01 2.40 16 46 H 0.07 1.58 7.22 -2.39 -0.02 1.56 16 47 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 48 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 49 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 50 H 0.06 1.37 7.30 -2.39 -0.02 1.35 16 51 H 0.03 0.80 6.47 -2.39 -0.02 0.78 16 52 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 Total: -1.00 -73.44 408.91 2.79 -70.65 By element: Atomic # 1 Polarization: 24.42 SS G_CDS: 0.28 Total: 24.71 kcal Atomic # 6 Polarization: -11.93 SS G_CDS: 7.63 Total: -4.30 kcal Atomic # 7 Polarization: -109.39 SS G_CDS: -5.42 Total: -114.82 kcal Atomic # 8 Polarization: -24.06 SS G_CDS: -1.50 Total: -25.56 kcal Atomic # 14 Polarization: 47.52 SS G_CDS: 1.80 Total: 49.32 kcal Total: -73.44 2.79 -70.65 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001357988638.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.048 kcal (2) G-P(sol) polarization free energy of solvation -73.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds