Wall clock time and date at job start Wed Apr 1 2020 05:14:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17408 * 1 3 3 C 1.47189 * 179.97438 * 2 1 4 4 H 1.08996 * 109.45566 * 140.96816 * 3 2 1 5 5 C 1.53042 * 109.46136 * 260.93621 * 3 2 1 6 6 C 1.53120 * 109.27887 * 179.19460 * 5 3 2 7 7 C 1.53119 * 109.16168 * 302.34674 * 6 5 3 8 8 C 1.53044 * 109.27630 * 57.65473 * 7 6 5 9 9 N 1.46844 * 109.52372 * 300.81724 * 8 7 6 10 10 C 1.38578 * 111.00148 * 185.84337 * 9 8 7 11 11 N 1.31226 * 126.46995 * 241.41587 * 10 9 8 12 12 N 1.28532 * 109.85715 * 179.69071 * 11 10 9 13 13 C 1.30293 * 110.05114 * 0.45172 * 12 11 10 14 14 C 1.50701 * 126.34580 * 179.81578 * 13 12 11 15 15 C 1.52996 * 109.47545 * 269.69677 * 14 13 12 16 16 H 1.09002 * 109.47144 * 54.99479 * 15 14 13 17 17 O 1.42908 * 109.46740 * 294.99796 * 15 14 13 18 18 C 1.50699 * 109.47454 * 175.00066 * 15 14 13 19 19 H 1.08003 * 119.99689 * 359.97438 * 18 15 14 20 20 C 1.37873 * 119.99967 * 180.02562 * 18 15 14 21 21 N 1.31512 * 120.00487 * 359.97438 * 20 18 15 22 22 Si 1.86803 * 119.99909 * 179.97438 * 20 18 15 23 23 H 1.48504 * 109.46967 * 60.00004 * 22 20 18 24 24 H 1.48498 * 109.47412 * 179.97438 * 22 20 18 25 25 H 1.48491 * 109.47214 * 299.99903 * 22 20 18 26 26 N 1.36444 * 126.47424 * 61.37116 * 10 9 8 27 27 C 1.46499 * 127.13749 * 0.02562 * 26 10 9 28 28 C 1.53003 * 109.46984 * 247.81547 * 27 26 10 29 29 C 1.52999 * 109.47057 * 66.63785 * 28 27 26 30 30 C 1.52999 * 109.47185 * 186.63974 * 28 27 26 31 31 H 4.18713 * 15.04426 * 0.02562 * 4 2 1 32 32 H 1.09002 * 109.49942 * 59.25831 * 5 3 2 33 33 H 1.08996 * 109.53832 * 299.15752 * 5 3 2 34 34 H 1.08993 * 109.52190 * 182.44202 * 6 5 3 35 35 H 1.08998 * 109.52372 * 62.24991 * 6 5 3 36 36 H 1.08994 * 109.50318 * 297.71475 * 7 6 5 37 37 H 1.08996 * 109.50576 * 177.59436 * 7 6 5 38 38 H 1.09001 * 109.45661 * 180.80495 * 8 7 6 39 39 H 1.08996 * 109.46309 * 60.83730 * 8 7 6 40 40 H 1.09008 * 109.46944 * 29.69724 * 14 13 12 41 41 H 1.08998 * 109.47191 * 149.69164 * 14 13 12 42 42 H 0.96695 * 114.00132 * 299.99582 * 17 15 14 43 43 H 0.96993 * 120.00302 * 180.02562 * 21 20 18 44 44 H 1.08999 * 109.47426 * 7.81117 * 27 26 10 45 45 H 1.08994 * 109.47513 * 127.81748 * 27 26 10 46 46 H 1.08999 * 109.47030 * 306.63494 * 28 27 26 47 47 H 1.09001 * 109.46853 * 189.91755 * 29 28 27 48 48 H 1.08998 * 109.47162 * 309.91239 * 29 28 27 49 49 H 1.09000 * 109.47395 * 69.91672 * 29 28 27 50 50 H 1.09000 * 109.47663 * 59.99674 * 30 28 27 51 51 H 1.09002 * 109.47212 * 180.02562 * 30 28 27 52 52 H 1.09008 * 109.46947 * 299.99629 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0087 0.7992 -0.6472 5 6 3.1558 0.2282 1.4250 6 6 4.6868 0.2081 1.4234 7 6 5.1713 -1.1296 0.8574 8 6 4.6031 -1.3178 -0.5512 9 7 3.1359 -1.2918 -0.4960 10 6 2.5870 -1.5894 -1.7331 11 7 1.8221 -0.8056 -2.4560 12 7 1.4984 -1.3989 -3.5493 13 6 2.0251 -2.5901 -3.5840 14 6 1.8785 -3.5995 -4.6934 15 6 0.6600 -4.4837 -4.4206 16 1 -0.2209 -3.8564 -4.2845 17 8 0.8849 -5.2526 -3.2372 18 6 0.4408 -5.4111 -5.5881 19 1 1.1041 -5.3733 -6.4397 20 6 -0.6069 -6.3070 -5.5695 21 7 -1.4148 -6.3528 -4.5328 22 14 -0.8790 -7.4561 -7.0169 23 1 0.3209 -8.3111 -7.2026 24 1 -2.0616 -8.3144 -6.7522 25 1 -1.1123 -6.6568 -8.2464 26 7 2.7405 -2.7524 -2.4300 27 6 3.5119 -3.9304 -2.0259 28 6 4.7222 -4.0885 -2.9485 29 6 5.6872 -2.9218 -2.7283 30 6 5.4344 -5.4057 -2.6343 31 1 -1.0500 -0.0003 0.0009 32 1 2.7821 -0.5624 2.0757 33 1 2.8049 1.1943 1.7877 34 1 5.0537 0.3265 2.4429 35 1 5.0612 1.0228 0.8036 36 1 4.8293 -1.9415 1.4992 37 1 6.2604 -1.1334 0.8139 38 1 4.9346 -2.2759 -0.9514 39 1 4.9566 -0.5131 -1.1958 40 1 1.7451 -3.0797 -5.6423 41 1 2.7738 -4.2193 -4.7414 42 1 1.6548 -5.8354 -3.2872 43 1 -2.1517 -6.9833 -4.5196 44 1 3.8525 -3.8067 -0.9979 45 1 2.8833 -4.8180 -2.0961 46 1 4.3896 -4.0940 -3.9865 47 1 6.4565 -2.9359 -3.5004 48 1 5.1382 -1.9816 -2.7795 49 1 6.1545 -3.0168 -1.7481 50 1 4.7470 -6.2369 -2.7911 51 1 6.2969 -5.5181 -3.2912 52 1 5.7671 -5.4002 -1.5962 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001357988639.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:51 Heat of formation + Delta-G solvation = 88.076477 kcal Electronic energy + Delta-G solvation = -32728.382973 eV Core-core repulsion = 28731.074138 eV Total energy + Delta-G solvation = -3997.308835 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.61590 -39.44411 -37.22293 -36.01561 -34.03742 -33.46120 -32.85034 -32.17122 -31.01019 -30.29180 -27.99256 -27.51618 -26.66769 -25.43544 -24.77107 -23.68263 -21.82510 -21.13395 -20.67561 -20.21198 -19.59793 -18.19046 -17.23140 -16.89042 -16.06624 -16.02995 -15.44499 -15.15139 -14.78804 -14.65320 -14.50982 -14.17805 -14.08060 -13.92459 -13.77747 -13.55058 -13.19800 -13.12564 -12.93480 -12.70882 -12.28974 -12.05267 -11.75796 -11.63532 -11.41321 -11.32871 -11.24833 -11.15930 -11.12285 -10.95183 -10.92276 -10.79217 -10.78039 -10.50346 -10.32406 -10.15006 -10.09470 -9.77252 -9.60872 -9.46363 -9.05702 -8.61573 -8.37910 -7.73779 -6.04201 -4.24156 2.23641 2.46736 3.09394 3.16563 3.26850 3.33018 3.33906 3.42583 3.88979 4.32137 4.35421 4.46162 4.52097 4.60251 4.67503 4.72423 4.84568 4.94659 5.02587 5.07804 5.16420 5.20789 5.26958 5.28047 5.31914 5.37255 5.41930 5.43881 5.57939 5.59699 5.63087 5.68062 5.70299 5.77013 5.83243 5.87511 5.90344 5.97457 6.06152 6.12417 6.13566 6.23877 6.30570 6.39874 6.44858 6.73434 6.77617 6.99882 7.54744 7.67142 7.79124 7.95291 8.08782 8.77427 9.25048 9.34542 9.51886 10.99749 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014173 B = 0.003480 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.122411 B = 8044.767515 C = 9274.079726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.174 4.174 3 C 0.221 3.779 4 H 0.074 0.926 5 C -0.109 4.109 6 C -0.123 4.123 7 C -0.118 4.118 8 C 0.031 3.969 9 N -0.445 5.445 10 C 0.334 3.666 11 N -0.314 5.314 12 N -0.300 5.300 13 C 0.218 3.782 14 C -0.064 4.064 15 C 0.239 3.761 16 H 0.063 0.937 17 O -0.560 6.560 18 C -0.574 4.574 19 H 0.058 0.942 20 C 0.081 3.919 21 N -0.856 5.856 22 Si 0.891 3.109 23 H -0.276 1.276 24 H -0.287 1.287 25 H -0.275 1.275 26 N -0.464 5.464 27 C 0.108 3.892 28 C -0.119 4.119 29 C -0.156 4.156 30 C -0.143 4.143 31 H 0.214 0.786 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.104 0.896 39 H 0.046 0.954 40 H 0.094 0.906 41 H 0.072 0.928 42 H 0.338 0.662 43 H 0.262 0.738 44 H 0.094 0.906 45 H 0.106 0.894 46 H 0.087 0.913 47 H 0.060 0.940 48 H 0.055 0.945 49 H 0.062 0.938 50 H 0.066 0.934 51 H 0.061 0.939 52 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.476 8.100 11.697 22.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.175 4.175 3 C 0.114 3.886 4 H 0.092 0.908 5 C -0.147 4.147 6 C -0.160 4.160 7 C -0.156 4.156 8 C -0.095 4.095 9 N -0.169 5.169 10 C -0.022 4.022 11 N -0.158 5.158 12 N -0.138 5.138 13 C -0.049 4.049 14 C -0.104 4.104 15 C 0.180 3.820 16 H 0.081 0.919 17 O -0.363 6.363 18 C -0.612 4.612 19 H 0.076 0.924 20 C -0.125 4.125 21 N -0.491 5.491 22 Si 0.718 3.282 23 H -0.201 1.201 24 H -0.212 1.212 25 H -0.200 1.200 26 N -0.158 5.158 27 C -0.015 4.015 28 C -0.138 4.138 29 C -0.213 4.213 30 C -0.201 4.201 31 H 0.231 0.769 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.122 0.878 39 H 0.064 0.936 40 H 0.112 0.888 41 H 0.090 0.910 42 H 0.181 0.819 43 H 0.072 0.928 44 H 0.112 0.888 45 H 0.124 0.876 46 H 0.105 0.895 47 H 0.079 0.921 48 H 0.074 0.926 49 H 0.081 0.919 50 H 0.085 0.915 51 H 0.080 0.920 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 15.865 9.223 11.924 21.884 hybrid contribution 0.867 -1.584 -1.129 2.129 sum 16.732 7.639 10.795 21.327 Atomic orbital electron populations 1.24733 0.95708 0.98458 1.00563 1.22064 0.93323 1.01740 1.00341 1.18302 0.85604 0.88244 0.96459 0.90810 1.21663 0.95462 1.02986 0.94587 1.21631 0.95269 0.97519 1.01627 1.21645 1.00095 0.98477 0.95370 1.23051 0.84452 1.03607 0.98433 1.58633 1.07711 1.32315 1.18225 1.22256 1.02273 0.85892 0.91795 1.74548 1.16083 1.24626 1.00565 1.73981 1.21520 1.04838 1.13487 1.25140 0.93999 0.96531 0.89259 1.21247 1.02718 0.93899 0.92563 1.19388 0.90078 0.88211 0.84278 0.91918 1.86671 1.50438 1.58519 1.40661 1.21531 1.14504 1.21172 1.04023 0.92358 1.25028 0.95176 0.96880 0.95458 1.70070 1.15426 1.35128 1.28476 0.86708 0.77711 0.80777 0.83011 1.20147 1.21221 1.20033 1.45990 1.39758 1.13151 1.16915 1.22093 0.92623 0.87517 0.99237 1.21618 0.94773 0.96268 1.01132 1.22190 0.99256 0.98213 1.01644 1.21764 1.00627 0.96104 1.01638 0.76916 0.90372 0.90361 0.90991 0.91759 0.90563 0.90721 0.87829 0.93558 0.88784 0.90991 0.81860 0.92836 0.88819 0.87612 0.89523 0.92088 0.92606 0.91937 0.91543 0.92006 0.92488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.79 19.25 29.55 0.57 -2.23 16 2 C -0.17 -2.80 10.49 -37.13 -0.39 -3.19 16 3 C 0.22 2.95 2.00 -70.51 -0.14 2.81 16 4 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 5 C -0.11 -1.04 5.33 -26.65 -0.14 -1.18 16 6 C -0.12 -0.90 6.00 -26.61 -0.16 -1.06 16 7 C -0.12 -0.89 6.09 -26.65 -0.16 -1.06 16 8 C 0.03 0.32 3.83 -3.83 -0.01 0.31 16 9 N -0.44 -6.24 4.39 -170.19 -0.75 -6.99 16 10 C 0.33 5.92 6.25 -318.88 -1.99 3.93 16 11 N -0.31 -6.54 10.04 30.31 0.30 -6.24 16 12 N -0.30 -6.73 12.18 32.99 0.40 -6.33 16 13 C 0.22 4.42 6.88 -154.01 -1.06 3.36 16 14 C -0.06 -1.29 5.16 -27.88 -0.14 -1.43 16 15 C 0.24 5.92 2.81 -27.89 -0.08 5.84 16 16 H 0.06 1.83 8.14 -51.93 -0.42 1.41 16 17 O -0.56 -13.64 11.47 -35.23 -0.40 -14.04 16 18 C -0.57 -15.18 8.76 -34.44 -0.30 -15.48 16 19 H 0.06 1.47 7.74 -52.48 -0.41 1.07 16 20 C 0.08 2.23 5.40 -17.82 -0.10 2.13 16 21 N -0.86 -25.05 12.84 55.43 0.71 -24.34 16 22 Si 0.89 20.72 29.54 -169.99 -5.02 15.70 16 23 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 24 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 25 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 26 N -0.46 -7.95 2.32 -114.09 -0.26 -8.21 16 27 C 0.11 1.45 4.91 -4.04 -0.02 1.43 16 28 C -0.12 -1.29 2.94 -90.62 -0.27 -1.55 16 29 C -0.16 -1.50 7.57 37.16 0.28 -1.22 16 30 C -0.14 -1.25 9.17 37.16 0.34 -0.91 16 31 H 0.21 2.77 7.80 -54.09 -0.42 2.35 16 32 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.10 1.02 1.90 -51.93 -0.10 0.93 16 39 H 0.05 0.50 7.88 -51.93 -0.41 0.09 16 40 H 0.09 1.89 8.14 -51.92 -0.42 1.47 16 41 H 0.07 1.26 5.76 -51.93 -0.30 0.96 16 42 H 0.34 7.03 7.98 45.56 0.36 7.40 16 43 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 44 H 0.09 1.11 6.47 -51.93 -0.34 0.78 16 45 H 0.11 1.54 5.88 -51.93 -0.31 1.24 16 46 H 0.09 1.09 5.78 -51.93 -0.30 0.79 16 47 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 48 H 0.05 0.66 5.56 -51.93 -0.29 0.37 16 49 H 0.06 0.49 6.74 -51.93 -0.35 0.13 16 50 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 51 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 52 H 0.06 0.42 8.14 -51.92 -0.42 0.00 16 LS Contribution 400.60 15.07 6.04 6.04 Total: -1.00 -34.04 400.60 -10.24 -44.29 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: -7.48 Total: 9.62 kcal Atomic # 6 Polarization: -5.72 SS G_CDS: -3.78 Total: -9.50 kcal Atomic # 7 Polarization: -52.51 SS G_CDS: 0.41 Total: -52.11 kcal Atomic # 8 Polarization: -13.64 SS G_CDS: -0.40 Total: -14.04 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.04 -10.24 -44.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001357988639.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.362 kcal (2) G-P(sol) polarization free energy of solvation -34.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds