Wall clock time and date at job start Wed Apr 1 2020 05:04:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50697 * 120.00731 * 2 1 4 4 C 1.50701 * 119.99421 * 180.02562 * 2 1 3 5 5 N 1.46498 * 109.47206 * 95.00055 * 4 2 1 6 6 C 1.36746 * 127.13786 * 89.97304 * 5 4 2 7 7 C 1.50697 * 126.34510 * 0.02610 * 6 5 4 8 8 C 1.52997 * 109.47466 * 89.99903 * 7 6 5 9 9 C 1.53000 * 109.47060 * 180.02562 * 8 7 6 10 10 C 1.50703 * 109.46912 * 179.97438 * 9 8 7 11 11 H 1.08001 * 119.99776 * 0.02562 * 10 9 8 12 12 C 1.37877 * 120.00001 * 179.97438 * 10 9 8 13 13 N 1.31512 * 119.99923 * 179.97438 * 12 10 9 14 14 Si 1.86804 * 120.00006 * 0.02562 * 12 10 9 15 15 H 1.48497 * 109.46794 * 89.99626 * 14 12 10 16 16 H 1.48502 * 109.47140 * 209.99610 * 14 12 10 17 17 H 1.48501 * 109.46982 * 329.99723 * 14 12 10 18 18 N 1.30295 * 107.30579 * 180.28649 * 6 5 4 19 19 N 1.28529 * 110.05286 * 359.55524 * 18 6 5 20 20 C 1.31222 * 109.86099 * 0.45709 * 19 18 6 21 21 N 1.38574 * 126.47245 * 179.69287 * 20 19 18 22 22 C 1.47969 * 111.00167 * 120.85833 * 21 20 19 23 23 C 1.55158 * 104.97931 * 213.87380 * 22 21 20 24 24 C 1.53798 * 101.47849 * 35.65092 * 23 22 21 25 25 C 1.52612 * 115.97687 * 95.70640 * 24 23 22 26 26 O 1.44468 * 85.03283 * 95.86408 * 25 24 23 27 27 C 1.44463 * 93.59815 * 23.16199 * 26 25 24 28 28 C 1.47799 * 111.00250 * 0.03627 * 21 20 19 29 29 H 1.07996 * 120.00414 * 180.02562 * 1 2 3 30 30 H 1.08006 * 119.99135 * 359.97438 * 1 2 3 31 31 H 1.08994 * 109.47405 * 270.00307 * 3 2 1 32 32 H 1.09003 * 109.46773 * 30.00090 * 3 2 1 33 33 H 1.09003 * 109.46958 * 149.99783 * 3 2 1 34 34 H 1.09000 * 109.47455 * 335.00239 * 4 2 1 35 35 H 1.09004 * 109.47205 * 215.00074 * 4 2 1 36 36 H 1.09002 * 109.47120 * 329.99656 * 7 6 5 37 37 H 1.08998 * 109.46862 * 210.00458 * 7 6 5 38 38 H 1.09002 * 109.47153 * 59.99773 * 8 7 6 39 39 H 1.09001 * 109.46832 * 299.99964 * 8 7 6 40 40 H 1.09001 * 109.47194 * 299.99650 * 9 8 7 41 41 H 1.08992 * 109.47399 * 59.99823 * 9 8 7 42 42 H 0.97000 * 119.99684 * 179.97438 * 13 12 10 43 43 H 1.08996 * 110.33447 * 332.75215 * 22 21 20 44 44 H 1.08999 * 110.33780 * 94.99721 * 22 21 20 45 45 H 1.08997 * 111.02693 * 277.59692 * 23 22 21 46 46 H 1.09009 * 111.05190 * 153.70871 * 23 22 21 47 47 H 1.09001 * 113.94083 * 209.88037 * 25 24 23 48 48 H 1.08996 * 113.94225 * 341.84091 * 25 24 23 49 49 H 1.08995 * 113.94305 * 222.80906 * 27 26 25 50 50 H 1.09008 * 113.93809 * 90.85646 * 27 26 25 51 51 H 1.08993 * 109.99519 * 243.58391 * 28 21 20 52 52 H 1.09000 * 109.98910 * 4.87211 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 2.0634 -1.3052 -0.0006 5 7 2.4118 -1.6673 -1.3767 6 6 3.5484 -1.3281 -2.0571 7 6 4.6930 -0.5027 -1.5284 8 6 5.7243 -1.4222 -0.8715 9 6 6.8861 -0.5840 -0.3342 10 6 7.9016 -1.4897 0.3134 11 1 7.7352 -2.5565 0.3389 12 6 9.0436 -0.9565 0.8726 13 7 9.9295 -1.7469 1.4382 14 14 9.3316 0.8886 0.8279 15 1 8.7454 1.5106 2.0423 16 1 10.7909 1.1609 0.7876 17 1 8.6876 1.4610 -0.3816 18 7 3.4558 -1.8462 -3.2490 19 7 2.3508 -2.4926 -3.3640 20 6 1.6692 -2.4127 -2.2456 21 7 0.4291 -2.9779 -1.9946 22 6 0.4944 -3.9129 -0.8496 23 6 -0.5219 -5.0349 -1.1896 24 6 -0.3582 -5.1441 -2.7150 25 6 0.5961 -6.2277 -3.2089 26 8 -0.5944 -7.0326 -3.3571 27 6 -1.4675 -5.8858 -3.4553 28 6 -0.0660 -3.7151 -3.1760 29 1 -0.5400 -0.9352 0.0004 30 1 -0.5399 0.9354 0.0004 31 1 2.2453 1.6197 -1.0276 32 1 1.4746 2.0647 0.5139 33 1 3.0161 1.1745 0.5139 34 1 1.4384 -2.0857 0.4333 35 1 2.9741 -1.1993 0.5889 36 1 4.3185 0.2081 -0.7918 37 1 5.1606 0.0389 -2.3507 38 1 6.0988 -2.1330 -1.6081 39 1 5.2567 -1.9637 -0.0491 40 1 7.3538 -0.0422 -1.1563 41 1 6.5113 0.1265 0.4025 42 1 10.7331 -1.3718 1.8312 43 1 1.4983 -4.3268 -0.7554 44 1 0.2049 -3.4057 0.0707 45 1 -1.5365 -4.7367 -0.9256 46 1 -0.2513 -5.9701 -0.6994 47 1 1.0879 -5.9878 -4.1517 48 1 1.2844 -6.5922 -2.4463 49 1 -2.3913 -5.9831 -2.8853 50 1 -1.6274 -5.5378 -4.4759 51 1 -0.9782 -3.2503 -3.5500 52 1 0.6951 -3.7228 -3.9562 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001515358048.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:45 Heat of formation + Delta-G solvation = 93.326088 kcal Electronic energy + Delta-G solvation = -31404.864625 eV Core-core repulsion = 27407.783430 eV Total energy + Delta-G solvation = -3997.081195 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -43.02109 -41.43625 -38.17049 -37.08789 -35.04671 -33.53545 -32.75390 -31.91047 -30.07339 -29.61203 -27.75905 -27.16658 -27.08307 -27.03384 -25.25707 -23.69167 -22.84344 -20.99441 -20.85196 -20.18805 -19.42142 -19.01242 -17.51366 -16.87262 -16.74538 -16.34144 -16.24161 -16.23049 -15.83484 -15.26875 -14.94408 -14.53782 -14.38487 -14.25694 -13.74268 -13.59401 -13.46149 -13.31368 -13.23737 -12.74666 -12.71676 -12.37966 -12.32777 -12.18831 -12.08587 -11.99838 -11.75541 -11.56703 -11.44243 -11.14912 -11.02410 -10.97833 -10.86364 -10.47871 -10.11476 -10.07998 -10.01687 -9.91277 -9.81298 -9.54181 -9.51569 -9.23927 -8.57317 -8.22727 -6.07300 -4.05908 1.57558 1.81664 2.45530 2.93064 3.22467 3.27254 3.35951 3.38805 3.53455 3.63715 3.88104 4.16003 4.25860 4.38237 4.41906 4.53249 4.62264 4.70346 4.84023 4.92831 4.93384 4.96060 5.03239 5.09737 5.13795 5.23146 5.25747 5.26917 5.33967 5.39031 5.43538 5.45570 5.48011 5.55700 5.61737 5.64551 5.68175 5.73380 5.75923 5.87505 5.90350 5.98948 6.21974 6.27336 6.44692 6.45886 6.49795 6.55899 6.78552 7.11313 7.22384 7.35022 7.74808 8.50148 8.88379 8.97416 9.54629 11.06204 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013171 B = 0.002692 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2125.427606 B =10398.074219 C =11526.763368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.151 4.151 3 C -0.122 4.122 4 C 0.140 3.860 5 N -0.471 5.471 6 C 0.204 3.796 7 C -0.041 4.041 8 C -0.094 4.094 9 C -0.012 4.012 10 C -0.521 4.521 11 H 0.071 0.929 12 C 0.066 3.934 13 N -0.903 5.903 14 Si 0.879 3.121 15 H -0.278 1.278 16 H -0.288 1.288 17 H -0.264 1.264 18 N -0.287 5.287 19 N -0.325 5.325 20 C 0.343 3.657 21 N -0.439 5.439 22 C 0.038 3.962 23 C -0.100 4.100 24 C -0.151 4.151 25 C 0.051 3.949 26 O -0.380 6.380 27 C 0.056 3.944 28 C 0.055 3.945 29 H 0.103 0.897 30 H 0.102 0.898 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.098 0.902 35 H 0.107 0.893 36 H 0.078 0.922 37 H 0.096 0.904 38 H 0.063 0.937 39 H 0.050 0.950 40 H 0.020 0.980 41 H 0.011 0.989 42 H 0.263 0.737 43 H 0.060 0.940 44 H 0.091 0.909 45 H 0.089 0.911 46 H 0.088 0.912 47 H 0.090 0.910 48 H 0.091 0.909 49 H 0.094 0.906 50 H 0.086 0.914 51 H 0.093 0.907 52 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.154 -1.203 -3.767 27.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.152 4.152 3 C -0.178 4.178 4 C 0.018 3.982 5 N -0.166 5.166 6 C -0.064 4.064 7 C -0.081 4.081 8 C -0.133 4.133 9 C -0.049 4.049 10 C -0.559 4.559 11 H 0.089 0.911 12 C -0.135 4.135 13 N -0.542 5.542 14 Si 0.707 3.293 15 H -0.203 1.203 16 H -0.214 1.214 17 H -0.188 1.188 18 N -0.125 5.125 19 N -0.169 5.169 20 C -0.014 4.014 21 N -0.163 5.163 22 C -0.088 4.088 23 C -0.138 4.138 24 C -0.152 4.152 25 C -0.026 4.026 26 O -0.299 6.299 27 C -0.021 4.021 28 C -0.072 4.072 29 H 0.121 0.879 30 H 0.120 0.880 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.116 0.884 35 H 0.125 0.875 36 H 0.097 0.903 37 H 0.115 0.885 38 H 0.082 0.918 39 H 0.069 0.931 40 H 0.038 0.962 41 H 0.030 0.970 42 H 0.073 0.927 43 H 0.078 0.922 44 H 0.110 0.890 45 H 0.107 0.893 46 H 0.107 0.893 47 H 0.108 0.892 48 H 0.109 0.891 49 H 0.112 0.888 50 H 0.104 0.896 51 H 0.111 0.889 52 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -26.998 -1.454 -4.983 27.493 hybrid contribution 0.381 0.974 1.329 1.691 sum -26.617 -0.479 -3.654 26.871 Atomic orbital electron populations 1.23837 0.94959 1.02405 0.98045 1.21816 0.95643 0.95218 1.02529 1.20925 1.00497 0.93921 1.02506 1.21001 1.01825 0.95578 0.79812 1.46205 1.16380 1.40627 1.13340 1.25120 0.89513 1.02194 0.89533 1.20417 0.90198 0.96352 1.01087 1.21470 0.95024 0.97842 0.98993 1.19569 0.93542 0.95870 0.95936 1.21104 1.03281 0.95174 1.36342 0.91123 1.25036 0.95813 0.97910 0.94732 1.69915 1.10615 1.35160 1.38520 0.86783 0.77383 0.86184 0.78986 1.20347 1.21368 1.18836 1.74003 1.11851 1.11479 1.15155 1.74404 1.01713 1.21172 1.19649 1.22580 0.91413 0.98614 0.88808 1.60417 1.16507 1.32017 1.07356 1.23328 0.99866 0.92087 0.93566 1.22385 1.00150 0.98626 0.92643 1.24021 0.97582 0.95902 0.97678 1.23900 0.89484 0.88030 1.01159 1.89765 1.18069 1.27153 1.94917 1.23750 0.94424 0.83974 0.99992 1.22825 1.02287 0.90161 0.91886 0.87900 0.87952 0.91353 0.91412 0.91030 0.88403 0.87482 0.90311 0.88525 0.91828 0.93124 0.96194 0.97028 0.92709 0.92175 0.89040 0.89279 0.89340 0.89246 0.89069 0.88794 0.89598 0.88903 0.88210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 13.89 29.01 0.40 -0.87 16 2 C -0.15 -1.43 5.63 -101.07 -0.57 -2.00 16 3 C -0.12 -1.13 9.25 36.00 0.33 -0.79 16 4 C 0.14 1.45 5.93 -5.19 -0.03 1.42 16 5 N -0.47 -6.30 2.79 -115.37 -0.32 -6.62 16 6 C 0.20 3.26 7.32 -154.01 -1.13 2.13 16 7 C -0.04 -0.63 5.42 -27.89 -0.15 -0.79 16 8 C -0.09 -1.79 5.13 -26.73 -0.14 -1.93 16 9 C -0.01 -0.27 4.04 -27.88 -0.11 -0.38 16 10 C -0.52 -14.56 9.66 -34.44 -0.33 -14.89 16 11 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 12 C 0.07 1.90 5.47 -17.82 -0.10 1.81 16 13 N -0.90 -27.63 13.96 55.43 0.77 -26.85 16 14 Si 0.88 21.20 27.47 -169.99 -4.67 16.53 16 15 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 16 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 17 H -0.26 -6.05 6.54 56.52 0.37 -5.68 16 18 N -0.29 -5.22 12.18 32.99 0.40 -4.82 16 19 N -0.33 -5.42 10.48 30.31 0.32 -5.10 16 20 C 0.34 4.69 6.98 -318.88 -2.23 2.47 16 21 N -0.44 -4.50 5.24 -171.59 -0.90 -5.39 16 22 C 0.04 0.31 5.53 -2.09 -0.01 0.30 16 23 C -0.10 -0.65 6.42 -25.17 -0.16 -0.81 16 24 C -0.15 -1.14 1.01 -154.51 -0.16 -1.29 16 25 C 0.05 0.46 8.47 36.94 0.31 0.77 16 26 O -0.38 -3.81 12.46 -35.23 -0.44 -4.25 16 27 C 0.06 0.38 8.55 36.94 0.32 0.69 16 28 C 0.06 0.50 6.32 -3.34 -0.02 0.48 16 29 H 0.10 0.79 7.99 -52.49 -0.42 0.37 16 30 H 0.10 0.74 8.04 -52.48 -0.42 0.32 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.53 8.06 -51.93 -0.42 0.11 16 33 H 0.07 0.68 7.20 -51.93 -0.37 0.30 16 34 H 0.10 0.83 5.29 -51.93 -0.27 0.56 16 35 H 0.11 1.13 7.84 -51.93 -0.41 0.72 16 36 H 0.08 1.06 6.15 -51.93 -0.32 0.74 16 37 H 0.10 1.49 8.14 -51.93 -0.42 1.07 16 38 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 39 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 41 H 0.01 0.25 7.57 -51.93 -0.39 -0.14 16 42 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 43 H 0.06 0.59 7.79 -51.93 -0.40 0.19 16 44 H 0.09 0.60 6.69 -51.93 -0.35 0.26 16 45 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.09 0.56 8.06 -51.92 -0.42 0.14 16 47 H 0.09 0.81 8.00 -51.93 -0.42 0.40 16 48 H 0.09 0.81 8.12 -51.93 -0.42 0.39 16 49 H 0.09 0.49 8.12 -51.93 -0.42 0.06 16 50 H 0.09 0.49 8.14 -51.92 -0.42 0.07 16 51 H 0.09 0.73 8.10 -51.93 -0.42 0.31 16 52 H 0.10 1.13 6.06 -51.93 -0.31 0.82 16 LS Contribution 411.74 15.07 6.20 6.20 Total: -1.00 -33.88 411.74 -11.09 -44.97 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -8.69 Total: -0.97 kcal Atomic # 6 Polarization: -9.92 SS G_CDS: -3.77 Total: -13.69 kcal Atomic # 7 Polarization: -49.06 SS G_CDS: 0.27 Total: -48.79 kcal Atomic # 8 Polarization: -3.81 SS G_CDS: -0.44 Total: -4.25 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.67 Total: 16.53 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -33.88 -11.09 -44.97 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001515358048.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.294 kcal (2) G-P(sol) polarization free energy of solvation -33.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds