Wall clock time and date at job start Wed Apr 1 2020 05:19:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50704 * 120.00006 * 2 1 4 4 C 1.50704 * 119.99975 * 179.97438 * 2 1 3 5 5 N 1.46509 * 109.46628 * 119.36426 * 4 2 1 6 6 C 1.36451 * 127.13207 * 108.83473 * 5 4 2 7 7 N 1.38575 * 126.47712 * 359.97438 * 6 5 4 8 8 C 1.47049 * 111.00135 * 294.44362 * 7 6 5 9 9 C 1.53679 * 108.88320 * 181.79047 * 8 7 6 10 10 H 1.09001 * 112.07101 * 186.36118 * 9 8 7 11 11 C 1.54713 * 107.84530 * 310.91071 * 9 8 7 12 12 C 1.54554 * 103.82087 * 88.33587 * 11 9 8 13 13 C 1.54718 * 103.82022 * 359.97438 * 12 11 9 14 14 H 1.08999 * 112.65677 * 147.45791 * 13 12 11 15 15 C 1.47047 * 111.00250 * 170.18140 * 7 6 5 16 16 O 1.44647 * 107.28956 * 62.79847 * 9 8 7 17 17 N 1.31215 * 107.05084 * 180.24265 * 6 5 4 18 18 N 1.28531 * 109.86364 * 359.55741 * 17 6 5 19 19 C 1.30303 * 110.05007 * 0.45293 * 18 17 6 20 20 C 1.50692 * 126.34633 * 179.68757 * 19 18 17 21 21 C 1.53000 * 109.46793 * 137.65865 * 20 19 18 22 22 C 1.52993 * 109.47440 * 257.65845 * 20 19 18 23 23 C 1.50701 * 109.47451 * 17.66244 * 20 19 18 24 24 H 1.08001 * 119.99400 * 359.97438 * 23 20 19 25 25 C 1.37868 * 120.00432 * 179.97438 * 23 20 19 26 26 N 1.31520 * 120.00032 * 359.97438 * 25 23 20 27 27 Si 1.86802 * 120.00459 * 179.97438 * 25 23 20 28 28 H 1.48508 * 109.46706 * 359.97438 * 27 25 23 29 29 H 1.48490 * 109.47365 * 119.99798 * 27 25 23 30 30 H 1.48493 * 109.47195 * 240.00298 * 27 25 23 31 31 H 1.08000 * 119.99816 * 5.46584 * 1 2 3 32 32 H 1.07996 * 120.00155 * 185.45986 * 1 2 3 33 33 H 1.09000 * 109.47046 * 185.70813 * 3 2 1 34 34 H 1.09001 * 109.46622 * 305.70312 * 3 2 1 35 35 H 1.08995 * 109.46903 * 65.70661 * 3 2 1 36 36 H 1.08995 * 109.46984 * 359.37356 * 4 2 1 37 37 H 1.08993 * 109.47407 * 239.36325 * 4 2 1 38 38 H 1.08997 * 109.56981 * 301.61196 * 8 7 6 39 39 H 1.08998 * 109.57111 * 61.84781 * 8 7 6 40 40 H 1.08996 * 110.56113 * 206.91777 * 11 9 8 41 41 H 1.09001 * 110.56237 * 329.75692 * 11 9 8 42 42 H 1.08999 * 110.56206 * 241.41856 * 12 11 9 43 43 H 1.09004 * 110.55746 * 118.57712 * 12 11 9 44 44 H 1.09003 * 109.56955 * 58.38628 * 15 7 6 45 45 H 1.09003 * 109.56812 * 298.02410 * 15 7 6 46 46 H 1.09002 * 109.47615 * 68.84831 * 21 20 19 47 47 H 1.09004 * 109.47049 * 188.84476 * 21 20 19 48 48 H 1.08997 * 109.47448 * 308.84618 * 21 20 19 49 49 H 1.08997 * 109.47248 * 68.18669 * 22 20 19 50 50 H 1.09002 * 109.47273 * 188.19089 * 22 20 19 51 51 H 1.09005 * 109.47423 * 308.18762 * 22 20 19 52 52 H 0.97001 * 119.99875 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 7 2.8942 -1.3898 -1.2032 6 6 4.2542 -1.3040 -1.2732 7 7 5.1237 -1.1178 -0.2104 8 6 4.9281 0.2032 0.4053 9 6 5.9438 0.3757 1.5457 10 1 5.7731 1.2918 2.1111 11 6 5.8820 -0.8913 2.4314 12 6 6.8954 -1.8533 1.7708 13 6 7.4414 -1.0465 0.5688 14 1 8.4822 -1.2801 0.3444 15 6 6.5196 -1.3074 -0.6320 16 8 7.2637 0.3363 0.9554 17 7 4.5828 -1.4252 -2.5378 18 7 3.5255 -1.5887 -3.2500 19 6 2.4675 -1.5718 -2.4895 20 6 1.0387 -1.7237 -2.9436 21 6 0.2906 -2.6416 -1.9747 22 6 0.3633 -0.3512 -2.9701 23 6 1.0119 -2.3236 -4.3258 24 1 1.9371 -2.5698 -4.8256 25 6 -0.1936 -2.5582 -4.9523 26 7 -1.3204 -2.2588 -4.3434 27 14 -0.2269 -3.3011 -6.6659 28 1 1.1637 -3.5439 -7.1272 29 1 -0.9698 -4.5864 -6.6339 30 1 -0.9007 -2.3630 -7.5991 31 1 -0.5400 0.9311 -0.0891 32 1 -0.5400 -0.9310 0.0890 33 1 3.1307 1.1085 -0.1022 34 1 1.7257 1.9196 -0.8345 35 1 1.8790 1.8311 0.9366 36 1 1.3552 -2.1335 0.0122 37 1 2.6987 -1.3576 0.8848 38 1 5.0830 0.9810 -0.3423 39 1 3.9154 0.2747 0.8021 40 1 6.1840 -0.6596 3.4527 41 1 4.8803 -1.3210 2.4156 42 1 6.3957 -2.7593 1.4278 43 1 7.6995 -2.0978 2.4650 44 1 6.7572 -0.6080 -1.4336 45 1 6.6591 -2.3297 -0.9838 46 1 0.1731 -2.1385 -1.0149 47 1 -0.6918 -2.8782 -2.3836 48 1 0.8574 -3.5622 -1.8354 49 1 0.8026 0.2547 -3.7626 50 1 -0.7036 -0.4748 -3.1563 51 1 0.5096 0.1444 -2.0104 52 1 -2.1685 -2.4235 -4.7844 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001515789190.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:05 Heat of formation + Delta-G solvation = 96.388893 kcal Electronic energy + Delta-G solvation = -33635.115567 eV Core-core repulsion = 29638.167185 eV Total energy + Delta-G solvation = -3996.948382 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.44302 -40.85693 -37.20126 -36.23701 -34.89264 -32.97189 -32.18412 -31.83770 -31.17506 -28.65252 -27.69602 -26.82050 -25.77039 -25.66657 -25.00128 -24.80728 -21.92465 -21.29607 -20.99885 -19.74286 -19.27147 -18.63157 -17.63608 -16.39223 -16.03614 -15.91881 -15.39729 -15.29435 -15.16782 -14.89850 -14.71446 -14.39701 -14.11705 -13.75867 -13.45780 -13.28822 -13.10132 -12.95498 -12.71108 -12.29477 -12.12991 -11.92142 -11.87819 -11.47189 -11.38847 -11.35848 -11.24833 -11.03410 -11.01558 -10.85580 -10.62626 -10.61440 -10.43051 -10.15391 -10.12928 -9.89742 -9.85239 -9.70664 -9.49700 -9.18674 -8.91052 -8.49410 -8.33033 -7.69049 -6.00626 -4.05706 2.05116 2.46900 2.92029 3.32851 3.41048 3.50570 3.63170 3.68118 3.94335 4.42498 4.46528 4.50489 4.52737 4.62166 4.76873 4.83232 4.87570 5.04317 5.11078 5.18744 5.28776 5.30665 5.39158 5.46423 5.48751 5.53525 5.62474 5.64778 5.67330 5.71655 5.76619 5.87565 5.94131 5.94874 5.99189 5.99513 6.13154 6.44239 6.51141 6.56054 6.63000 6.70000 6.76322 6.80603 6.85263 6.88843 7.19276 7.25069 7.42332 7.62991 7.82484 7.89183 8.12027 8.35896 9.00070 9.56373 9.67117 11.02646 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017149 B = 0.003719 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.351949 B = 7527.031815 C = 8515.684583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.162 4.162 3 C -0.136 4.136 4 C 0.140 3.860 5 N -0.474 5.474 6 C 0.311 3.689 7 N -0.443 5.443 8 C 0.013 3.987 9 C 0.074 3.926 10 H 0.120 0.880 11 C -0.136 4.136 12 C -0.137 4.137 13 C 0.072 3.928 14 H 0.122 0.878 15 C 0.048 3.952 16 O -0.368 6.368 17 N -0.326 5.326 18 N -0.290 5.290 19 C 0.248 3.752 20 C 0.151 3.849 21 C -0.148 4.148 22 C -0.139 4.139 23 C -0.489 4.489 24 H 0.073 0.927 25 C 0.063 3.937 26 N -0.893 5.893 27 Si 0.896 3.104 28 H -0.271 1.271 29 H -0.286 1.286 30 H -0.285 1.285 31 H 0.104 0.896 32 H 0.109 0.891 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.108 0.892 37 H 0.093 0.907 38 H 0.055 0.945 39 H 0.104 0.896 40 H 0.069 0.931 41 H 0.082 0.918 42 H 0.085 0.915 43 H 0.069 0.931 44 H 0.064 0.936 45 H 0.094 0.906 46 H 0.026 0.974 47 H 0.100 0.900 48 H 0.023 0.977 49 H 0.028 0.972 50 H 0.088 0.912 51 H 0.031 0.969 52 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.741 4.656 17.573 20.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.163 4.163 3 C -0.192 4.192 4 C 0.018 3.982 5 N -0.168 5.168 6 C -0.046 4.046 7 N -0.168 5.168 8 C -0.114 4.114 9 C 0.016 3.984 10 H 0.137 0.863 11 C -0.174 4.174 12 C -0.175 4.175 13 C 0.014 3.986 14 H 0.139 0.861 15 C -0.079 4.079 16 O -0.287 6.287 17 N -0.170 5.170 18 N -0.127 5.127 19 C -0.019 4.019 20 C 0.148 3.852 21 C -0.206 4.206 22 C -0.198 4.198 23 C -0.528 4.528 24 H 0.092 0.908 25 C -0.137 4.137 26 N -0.533 5.533 27 Si 0.725 3.275 28 H -0.195 1.195 29 H -0.212 1.212 30 H -0.211 1.211 31 H 0.122 0.878 32 H 0.127 0.873 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.125 0.875 37 H 0.111 0.889 38 H 0.073 0.927 39 H 0.122 0.878 40 H 0.088 0.912 41 H 0.100 0.900 42 H 0.103 0.897 43 H 0.087 0.913 44 H 0.083 0.917 45 H 0.113 0.887 46 H 0.044 0.956 47 H 0.118 0.882 48 H 0.042 0.958 49 H 0.047 0.953 50 H 0.106 0.894 51 H 0.050 0.950 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 9.510 4.378 16.601 19.626 hybrid contribution -0.892 0.033 -0.389 0.974 sum 8.618 4.411 16.211 18.882 Atomic orbital electron populations 1.23823 0.94908 1.02768 0.96276 1.21628 0.95655 0.94970 1.04048 1.21217 1.01114 0.94876 1.02029 1.20991 0.94366 0.97181 0.85698 1.46247 1.05160 1.56257 1.09126 1.22317 0.82582 1.07921 0.91731 1.58782 1.04503 1.28935 1.24547 1.23550 1.01410 0.88948 0.97521 1.23465 0.82776 0.99554 0.92588 0.86264 1.22824 1.00906 0.94994 0.98651 1.22839 0.98505 0.99510 0.96630 1.23554 0.99493 0.81814 0.93766 0.86057 1.22700 0.84512 1.03862 0.96864 1.89287 1.33204 1.26839 1.79335 1.74530 1.22958 1.21517 0.98042 1.74087 0.93943 1.19792 1.24875 1.26178 1.00307 0.97826 0.77607 1.16835 0.78837 0.94216 0.95335 1.22228 1.04342 0.97565 0.96420 1.22121 1.03782 0.95665 0.98199 1.21133 0.93423 1.39832 0.98438 0.90847 1.24842 0.95414 0.95546 0.97932 1.69810 0.97225 1.48864 1.37392 0.86438 0.78271 0.78592 0.84247 1.19524 1.21192 1.21115 0.87803 0.87316 0.91050 0.91487 0.91460 0.87453 0.88923 0.92709 0.87783 0.91184 0.89960 0.89682 0.91261 0.91718 0.88736 0.95591 0.88164 0.95784 0.95258 0.89361 0.95038 0.93117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 10.74 29.01 0.31 -1.49 16 2 C -0.16 -2.16 3.89 -101.06 -0.39 -2.55 16 3 C -0.14 -1.65 9.29 36.01 0.33 -1.32 16 4 C 0.14 2.02 4.92 -5.19 -0.03 2.00 16 5 N -0.47 -8.73 2.74 -115.37 -0.32 -9.05 16 6 C 0.31 5.72 7.06 -318.89 -2.25 3.47 16 7 N -0.44 -6.24 3.58 -173.48 -0.62 -6.86 16 8 C 0.01 0.16 3.33 -3.39 -0.01 0.14 16 9 C 0.07 0.73 4.73 -25.48 -0.12 0.61 16 10 H 0.12 0.92 8.14 -51.93 -0.42 0.50 16 11 C -0.14 -1.16 6.24 -25.01 -0.16 -1.32 16 12 C -0.14 -1.22 6.24 -25.01 -0.16 -1.38 16 13 C 0.07 0.74 4.72 -25.51 -0.12 0.62 16 14 H 0.12 1.02 8.14 -51.93 -0.42 0.60 16 15 C 0.05 0.64 4.53 -3.42 -0.02 0.62 16 16 O -0.37 -4.36 11.25 -35.23 -0.40 -4.76 16 17 N -0.33 -7.25 11.28 30.31 0.34 -6.91 16 18 N -0.29 -7.26 11.14 32.99 0.37 -6.89 16 19 C 0.25 5.65 6.28 -154.01 -0.97 4.68 16 20 C 0.15 3.57 0.63 -156.82 -0.10 3.47 16 21 C -0.15 -3.21 7.31 37.16 0.27 -2.94 16 22 C -0.14 -3.16 7.86 37.15 0.29 -2.87 16 23 C -0.49 -13.31 7.88 -34.44 -0.27 -13.58 16 24 H 0.07 2.14 7.07 -52.49 -0.37 1.77 16 25 C 0.06 1.67 5.12 -17.82 -0.09 1.58 16 26 N -0.89 -23.47 9.43 55.43 0.52 -22.94 16 27 Si 0.90 21.43 29.54 -169.99 -5.02 16.40 16 28 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 29 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 30 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 31 H 0.10 1.22 8.05 -52.49 -0.42 0.80 16 32 H 0.11 1.41 6.39 -52.49 -0.34 1.07 16 33 H 0.07 0.90 3.58 -51.93 -0.19 0.71 16 34 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.11 1.58 5.12 -51.93 -0.27 1.32 16 37 H 0.09 1.12 6.88 -51.93 -0.36 0.76 16 38 H 0.05 0.76 7.78 -51.93 -0.40 0.36 16 39 H 0.10 1.15 3.65 -51.93 -0.19 0.96 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.08 0.72 7.82 -51.93 -0.41 0.31 16 42 H 0.08 0.82 7.82 -51.93 -0.41 0.42 16 43 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.06 0.98 7.96 -51.93 -0.41 0.57 16 45 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 46 H 0.03 0.47 2.53 -51.93 -0.13 0.33 16 47 H 0.10 2.41 5.88 -51.93 -0.31 2.11 16 48 H 0.02 0.52 8.12 -51.93 -0.42 0.10 16 49 H 0.03 0.70 8.12 -51.93 -0.42 0.28 16 50 H 0.09 2.14 6.33 -51.93 -0.33 1.81 16 51 H 0.03 0.60 3.26 -51.93 -0.17 0.44 16 52 H 0.26 6.57 8.31 -40.82 -0.34 6.23 16 LS Contribution 372.73 15.07 5.62 5.62 Total: -1.00 -30.81 372.73 -10.60 -41.41 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -7.63 Total: 4.22 kcal Atomic # 6 Polarization: -6.77 SS G_CDS: -3.47 Total: -10.24 kcal Atomic # 7 Polarization: -52.95 SS G_CDS: 0.29 Total: -52.65 kcal Atomic # 8 Polarization: -4.36 SS G_CDS: -0.40 Total: -4.76 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.81 -10.60 -41.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001515789190.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.802 kcal (2) G-P(sol) polarization free energy of solvation -30.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds