Wall clock time and date at job start Wed Apr 1 2020 05:19:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50704 * 120.00006 * 2 1 4 4 C 1.50704 * 119.99975 * 179.97438 * 2 1 3 5 5 N 1.46509 * 109.46628 * 119.36426 * 4 2 1 6 6 C 1.36451 * 127.13207 * 108.83473 * 5 4 2 7 7 N 1.38575 * 126.47712 * 359.97438 * 6 5 4 8 8 C 1.47049 * 111.00135 * 294.44362 * 7 6 5 9 9 C 1.53679 * 108.88320 * 181.79047 * 8 7 6 10 10 H 1.09001 * 112.07101 * 186.36118 * 9 8 7 11 11 C 1.54713 * 107.84530 * 310.91071 * 9 8 7 12 12 C 1.54554 * 103.82087 * 88.33587 * 11 9 8 13 13 C 1.54718 * 103.82022 * 359.97438 * 12 11 9 14 14 H 1.08999 * 112.65677 * 147.45791 * 13 12 11 15 15 C 1.47047 * 111.00250 * 170.18140 * 7 6 5 16 16 O 1.44647 * 107.28956 * 62.79847 * 9 8 7 17 17 N 1.31215 * 107.05084 * 180.24265 * 6 5 4 18 18 N 1.28531 * 109.86364 * 359.55741 * 17 6 5 19 19 C 1.30303 * 110.05007 * 0.45293 * 18 17 6 20 20 C 1.50692 * 126.34633 * 179.68757 * 19 18 17 21 21 C 1.53000 * 109.46793 * 137.65865 * 20 19 18 22 22 C 1.52993 * 109.47440 * 257.65845 * 20 19 18 23 23 C 1.50701 * 109.47451 * 17.66244 * 20 19 18 24 24 H 1.08001 * 119.99400 * 359.97438 * 23 20 19 25 25 C 1.37868 * 120.00432 * 179.97438 * 23 20 19 26 26 N 1.31520 * 120.00032 * 359.97438 * 25 23 20 27 27 Si 1.86802 * 120.00459 * 179.97438 * 25 23 20 28 28 H 1.48508 * 109.46706 * 359.97438 * 27 25 23 29 29 H 1.48490 * 109.47365 * 119.99798 * 27 25 23 30 30 H 1.48493 * 109.47195 * 240.00298 * 27 25 23 31 31 H 1.08000 * 119.99816 * 5.46584 * 1 2 3 32 32 H 1.07996 * 120.00155 * 185.45986 * 1 2 3 33 33 H 1.09000 * 109.47046 * 185.70813 * 3 2 1 34 34 H 1.09001 * 109.46622 * 305.70312 * 3 2 1 35 35 H 1.08995 * 109.46903 * 65.70661 * 3 2 1 36 36 H 1.08995 * 109.46984 * 359.37356 * 4 2 1 37 37 H 1.08993 * 109.47407 * 239.36325 * 4 2 1 38 38 H 1.08997 * 109.56981 * 301.61196 * 8 7 6 39 39 H 1.08998 * 109.57111 * 61.84781 * 8 7 6 40 40 H 1.08996 * 110.56113 * 206.91777 * 11 9 8 41 41 H 1.09001 * 110.56237 * 329.75692 * 11 9 8 42 42 H 1.08999 * 110.56206 * 241.41856 * 12 11 9 43 43 H 1.09004 * 110.55746 * 118.57712 * 12 11 9 44 44 H 1.09003 * 109.56955 * 58.38628 * 15 7 6 45 45 H 1.09003 * 109.56812 * 298.02410 * 15 7 6 46 46 H 1.09002 * 109.47615 * 68.84831 * 21 20 19 47 47 H 1.09004 * 109.47049 * 188.84476 * 21 20 19 48 48 H 1.08997 * 109.47448 * 308.84618 * 21 20 19 49 49 H 1.08997 * 109.47248 * 68.18669 * 22 20 19 50 50 H 1.09002 * 109.47273 * 188.19089 * 22 20 19 51 51 H 1.09005 * 109.47423 * 308.18762 * 22 20 19 52 52 H 0.97001 * 119.99875 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 7 2.8942 -1.3898 -1.2032 6 6 4.2542 -1.3040 -1.2732 7 7 5.1237 -1.1178 -0.2104 8 6 4.9281 0.2032 0.4053 9 6 5.9438 0.3757 1.5457 10 1 5.7731 1.2918 2.1111 11 6 5.8820 -0.8913 2.4314 12 6 6.8954 -1.8533 1.7708 13 6 7.4414 -1.0465 0.5688 14 1 8.4822 -1.2801 0.3444 15 6 6.5196 -1.3074 -0.6320 16 8 7.2637 0.3363 0.9554 17 7 4.5828 -1.4252 -2.5378 18 7 3.5255 -1.5887 -3.2500 19 6 2.4675 -1.5718 -2.4895 20 6 1.0387 -1.7237 -2.9436 21 6 0.2906 -2.6416 -1.9747 22 6 0.3633 -0.3512 -2.9701 23 6 1.0119 -2.3236 -4.3258 24 1 1.9371 -2.5698 -4.8256 25 6 -0.1936 -2.5582 -4.9523 26 7 -1.3204 -2.2588 -4.3434 27 14 -0.2269 -3.3011 -6.6659 28 1 1.1637 -3.5439 -7.1272 29 1 -0.9698 -4.5864 -6.6339 30 1 -0.9007 -2.3630 -7.5991 31 1 -0.5400 0.9311 -0.0891 32 1 -0.5400 -0.9310 0.0890 33 1 3.1307 1.1085 -0.1022 34 1 1.7257 1.9196 -0.8345 35 1 1.8790 1.8311 0.9366 36 1 1.3552 -2.1335 0.0122 37 1 2.6987 -1.3576 0.8848 38 1 5.0830 0.9810 -0.3423 39 1 3.9154 0.2747 0.8021 40 1 6.1840 -0.6596 3.4527 41 1 4.8803 -1.3210 2.4156 42 1 6.3957 -2.7593 1.4278 43 1 7.6995 -2.0978 2.4650 44 1 6.7572 -0.6080 -1.4336 45 1 6.6591 -2.3297 -0.9838 46 1 0.1731 -2.1385 -1.0149 47 1 -0.6918 -2.8782 -2.3836 48 1 0.8574 -3.5622 -1.8354 49 1 0.8026 0.2547 -3.7626 50 1 -0.7036 -0.4748 -3.1563 51 1 0.5096 0.1444 -2.0104 52 1 -2.1685 -2.4235 -4.7844 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001515789190.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:04 Heat of formation + Delta-G solvation = 80.075661 kcal Electronic energy + Delta-G solvation = -33635.822962 eV Core-core repulsion = 29638.167185 eV Total energy + Delta-G solvation = -3997.655777 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -43.98710 -41.81182 -38.56858 -37.55655 -36.43988 -34.35471 -33.24647 -32.89410 -32.69515 -30.13232 -28.85725 -28.11665 -27.39154 -27.27311 -26.57849 -25.80676 -23.54497 -22.40892 -22.00747 -20.97448 -20.69141 -19.85117 -18.78645 -17.84959 -17.63053 -17.19939 -16.87339 -16.50183 -16.32182 -16.08695 -15.92690 -15.51388 -15.26899 -15.09606 -14.95318 -14.69885 -14.31108 -13.99540 -13.87113 -13.68781 -13.34249 -13.29169 -13.10676 -12.93844 -12.71546 -12.60369 -12.59733 -12.42731 -12.35900 -12.18367 -12.10340 -11.99896 -11.84701 -11.79447 -11.76369 -11.39710 -11.33666 -11.12557 -10.77039 -10.70333 -10.46841 -10.35867 -9.79049 -9.24886 -8.04678 -6.14965 0.82469 1.02337 1.39140 1.42946 1.54256 1.62359 2.01583 2.46700 2.65489 2.86286 3.20568 3.49057 3.65383 3.70149 3.72010 3.76123 3.78595 3.85006 3.96602 4.03838 4.15359 4.27788 4.36975 4.42658 4.45186 4.52002 4.55832 4.60991 4.70688 4.74517 4.76127 4.82361 4.84071 4.87135 4.95400 4.98599 5.06287 5.09017 5.13309 5.17717 5.19669 5.29418 5.31619 5.54351 5.55825 5.58875 5.59571 5.76778 5.77134 5.80148 6.01932 6.09720 6.31240 6.43537 6.86729 7.50121 7.99884 8.96030 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017149 B = 0.003719 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.351949 B = 7527.031815 C = 8515.684583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.170 4.170 3 C -0.134 4.134 4 C 0.132 3.868 5 N -0.466 5.466 6 C 0.334 3.666 7 N -0.430 5.430 8 C 0.013 3.987 9 C 0.076 3.924 10 H 0.148 0.852 11 C -0.133 4.133 12 C -0.135 4.135 13 C 0.077 3.923 14 H 0.142 0.858 15 C 0.046 3.954 16 O -0.384 6.384 17 N -0.367 5.367 18 N -0.339 5.339 19 C 0.232 3.768 20 C 0.148 3.852 21 C -0.134 4.134 22 C -0.124 4.124 23 C -0.515 4.515 24 H 0.042 0.958 25 C 0.033 3.967 26 N -0.897 5.897 27 Si 0.942 3.058 28 H -0.286 1.286 29 H -0.275 1.275 30 H -0.279 1.279 31 H 0.119 0.881 32 H 0.109 0.891 33 H 0.064 0.936 34 H 0.051 0.949 35 H 0.100 0.900 36 H 0.106 0.894 37 H 0.123 0.877 38 H 0.032 0.968 39 H 0.119 0.881 40 H 0.093 0.907 41 H 0.083 0.917 42 H 0.076 0.924 43 H 0.090 0.910 44 H 0.038 0.962 45 H 0.086 0.914 46 H 0.063 0.937 47 H 0.079 0.921 48 H 0.013 0.987 49 H -0.001 1.001 50 H 0.073 0.927 51 H 0.064 0.936 52 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.762 5.312 21.128 23.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.171 4.171 3 C -0.190 4.190 4 C 0.011 3.989 5 N -0.159 5.159 6 C -0.023 4.023 7 N -0.155 5.155 8 C -0.113 4.113 9 C 0.018 3.982 10 H 0.165 0.835 11 C -0.170 4.170 12 C -0.172 4.172 13 C 0.019 3.981 14 H 0.159 0.841 15 C -0.081 4.081 16 O -0.303 6.303 17 N -0.211 5.211 18 N -0.175 5.175 19 C -0.037 4.037 20 C 0.145 3.855 21 C -0.192 4.192 22 C -0.183 4.183 23 C -0.554 4.554 24 H 0.060 0.940 25 C -0.166 4.166 26 N -0.536 5.536 27 Si 0.769 3.231 28 H -0.212 1.212 29 H -0.201 1.201 30 H -0.204 1.204 31 H 0.137 0.863 32 H 0.127 0.873 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.119 0.881 36 H 0.124 0.876 37 H 0.141 0.859 38 H 0.051 0.949 39 H 0.137 0.863 40 H 0.112 0.888 41 H 0.101 0.899 42 H 0.094 0.906 43 H 0.109 0.891 44 H 0.056 0.944 45 H 0.105 0.895 46 H 0.081 0.919 47 H 0.097 0.903 48 H 0.032 0.968 49 H 0.019 0.981 50 H 0.092 0.908 51 H 0.083 0.917 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 9.516 5.040 20.181 22.874 hybrid contribution -0.832 -0.149 -1.431 1.662 sum 8.684 4.891 18.750 21.234 Atomic orbital electron populations 1.24010 0.94820 1.03601 0.95337 1.21682 0.95870 0.94871 1.04683 1.21236 1.00314 0.94248 1.03224 1.21329 0.94729 0.97911 0.84933 1.46298 1.05357 1.55374 1.08904 1.22753 0.83162 1.04653 0.91762 1.59004 1.04164 1.30241 1.22076 1.23703 1.03367 0.86601 0.97677 1.23707 0.81046 1.01691 0.91712 0.83453 1.22858 1.00868 0.93821 0.99475 1.22848 0.99283 0.98928 0.96180 1.23661 0.99751 0.81801 0.92875 0.84090 1.22783 0.84658 1.02702 0.97992 1.89287 1.34098 1.27484 1.79460 1.74418 1.22699 1.24150 0.99835 1.73966 0.95247 1.21277 1.27046 1.25837 0.99533 0.99086 0.79277 1.16743 0.79945 0.94586 0.94217 1.22053 1.02389 0.97065 0.97665 1.21973 1.02192 0.95151 0.98934 1.21215 0.92464 1.41145 1.00594 0.94004 1.25294 0.95251 0.95847 1.00229 1.69864 0.97238 1.48562 1.37931 0.85754 0.77329 0.78518 0.81498 1.21161 1.20059 1.20439 0.86307 0.87284 0.91780 0.92959 0.88118 0.87584 0.85932 0.94923 0.86343 0.88822 0.89864 0.90563 0.89133 0.94360 0.89541 0.91875 0.90264 0.96814 0.98128 0.90782 0.91748 0.92788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.21 10.74 67.78 0.73 -2.48 16 2 C -0.17 -4.08 3.89 -16.48 -0.06 -4.15 16 3 C -0.13 -2.90 9.29 71.24 0.66 -2.24 16 4 C 0.13 3.51 4.92 85.63 0.42 3.93 16 5 N -0.47 -17.03 2.74 -518.91 -1.42 -18.46 16 6 C 0.33 12.39 7.06 260.12 1.84 14.23 16 7 N -0.43 -11.70 3.58 -702.77 -2.52 -14.21 16 8 C 0.01 0.29 3.33 86.50 0.29 0.58 16 9 C 0.08 1.24 4.73 31.41 0.15 1.39 16 10 H 0.15 1.61 8.14 -2.39 -0.02 1.59 16 11 C -0.13 -1.71 6.24 31.71 0.20 -1.51 16 12 C -0.13 -1.97 6.24 31.71 0.20 -1.77 16 13 C 0.08 1.44 4.72 31.39 0.15 1.59 16 14 H 0.14 2.06 8.14 -2.39 -0.02 2.04 16 15 C 0.05 1.22 4.53 86.48 0.39 1.61 16 16 O -0.38 -8.16 11.25 -148.98 -1.68 -9.83 16 17 N -0.37 -17.06 11.28 -58.01 -0.65 -17.71 16 18 N -0.34 -17.81 11.14 -49.54 -0.55 -18.36 16 19 C 0.23 10.87 6.28 137.63 0.86 11.73 16 20 C 0.15 7.17 0.63 -53.68 -0.03 7.13 16 21 C -0.13 -5.81 7.31 71.98 0.53 -5.29 16 22 C -0.12 -5.71 7.86 71.98 0.57 -5.14 16 23 C -0.52 -29.17 7.88 25.60 0.20 -28.97 16 24 H 0.04 2.59 7.07 -2.91 -0.02 2.57 16 25 C 0.03 1.81 5.12 84.65 0.43 2.24 16 26 N -0.90 -47.39 9.43 21.44 0.20 -47.19 16 27 Si 0.94 44.85 29.54 68.60 2.03 46.88 16 28 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 29 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 30 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 31 H 0.12 2.41 8.05 -2.91 -0.02 2.39 16 32 H 0.11 2.50 6.39 -2.91 -0.02 2.48 16 33 H 0.06 1.48 3.58 -2.39 -0.01 1.47 16 34 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.11 2.88 5.12 -2.39 -0.01 2.87 16 37 H 0.12 2.53 6.88 -2.39 -0.02 2.51 16 38 H 0.03 0.88 7.78 -2.39 -0.02 0.86 16 39 H 0.12 2.26 3.65 -2.39 -0.01 2.25 16 40 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.08 1.09 7.82 -2.39 -0.02 1.07 16 42 H 0.08 1.28 7.82 -2.39 -0.02 1.26 16 43 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.04 1.21 7.96 -2.39 -0.02 1.19 16 45 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 46 H 0.06 2.20 2.53 -2.39 -0.01 2.19 16 47 H 0.08 3.81 5.88 -2.38 -0.01 3.79 16 48 H 0.01 0.58 8.12 -2.39 -0.02 0.56 16 49 H 0.00 -0.03 8.12 -2.39 -0.02 -0.05 16 50 H 0.07 3.60 6.33 -2.39 -0.02 3.58 16 51 H 0.06 2.45 3.26 -2.38 -0.01 2.45 16 52 H 0.26 13.25 8.31 -92.71 -0.77 12.48 16 Total: -1.00 -71.00 372.73 3.87 -67.13 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: 0.95 Total: 18.88 kcal Atomic # 6 Polarization: -14.63 SS G_CDS: 7.51 Total: -7.12 kcal Atomic # 7 Polarization: -110.99 SS G_CDS: -4.95 Total: -115.94 kcal Atomic # 8 Polarization: -8.16 SS G_CDS: -1.68 Total: -9.83 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -71.00 3.87 -67.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001515789190.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.205 kcal (2) G-P(sol) polarization free energy of solvation -70.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds