Wall clock time and date at job start Wed Apr 1 2020 05:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 H 1.08996 * 109.49896 * 171.86267 * 3 2 1 5 5 C 1.53118 * 109.50425 * 51.78007 * 3 2 1 6 6 C 1.53123 * 109.16014 * 182.36175 * 5 3 2 7 7 C 1.53033 * 109.27500 * 57.65940 * 6 5 3 8 8 N 1.46847 * 109.52601 * 300.81848 * 7 6 5 9 9 C 1.38579 * 111.00207 * 185.83906 * 8 7 6 10 10 N 1.31215 * 126.47570 * 257.88421 * 9 8 7 11 11 N 1.28528 * 109.86119 * 179.97438 * 10 9 8 12 12 C 1.30295 * 110.05498 * 359.97438 * 11 10 9 13 13 C 1.50695 * 126.34657 * 180.02562 * 12 11 10 14 14 C 1.53004 * 109.47276 * 90.02444 * 13 12 11 15 15 H 1.09000 * 109.46923 * 54.99782 * 14 13 12 16 16 O 1.42900 * 109.46788 * 295.00096 * 14 13 12 17 17 C 1.50700 * 109.46937 * 174.99725 * 14 13 12 18 18 H 1.07994 * 120.00334 * 359.97438 * 17 14 13 19 19 C 1.37885 * 119.99638 * 180.02562 * 17 14 13 20 20 N 1.31518 * 119.99952 * 359.97438 * 19 17 14 21 21 Si 1.86791 * 119.99914 * 180.02562 * 19 17 14 22 22 H 1.48505 * 109.47264 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47494 * 119.99682 * 21 19 17 24 24 H 1.48496 * 109.47063 * 240.00009 * 21 19 17 25 25 N 1.36458 * 126.47259 * 78.19335 * 9 8 7 26 26 C 1.46499 * 127.13442 * 359.97438 * 25 9 8 27 27 C 1.53006 * 109.46986 * 84.30885 * 26 25 9 28 28 C 1.52998 * 109.46970 * 65.54599 * 27 26 25 29 29 C 1.52998 * 109.47194 * 185.54795 * 27 26 25 30 30 C 1.46844 * 111.19690 * 61.74127 * 8 7 6 31 31 H 4.18779 * 15.03143 * 359.97438 * 4 2 1 32 32 H 1.09011 * 109.52007 * 62.46099 * 5 3 2 33 33 H 1.08993 * 109.52824 * 302.27413 * 5 3 2 34 34 H 1.08996 * 109.50320 * 297.71741 * 6 5 3 35 35 H 1.09007 * 109.53557 * 177.61994 * 6 5 3 36 36 H 1.08998 * 109.46178 * 180.80284 * 7 6 5 37 37 H 1.09005 * 109.45596 * 60.83288 * 7 6 5 38 38 H 1.09001 * 109.47487 * 330.01965 * 13 12 11 39 39 H 1.09003 * 109.47069 * 210.02285 * 13 12 11 40 40 H 0.96704 * 113.99586 * 299.99608 * 16 14 13 41 41 H 0.96994 * 119.99978 * 179.97438 * 20 19 17 42 42 H 1.09005 * 109.47135 * 204.30726 * 26 25 9 43 43 H 1.09000 * 109.47509 * 324.30878 * 26 25 9 44 44 H 1.08993 * 109.46974 * 305.54935 * 27 26 25 45 45 H 1.09004 * 109.47433 * 175.59653 * 28 27 26 46 46 H 1.09003 * 109.47619 * 295.59938 * 28 27 26 47 47 H 1.09007 * 109.47194 * 55.59708 * 28 27 26 48 48 H 1.08993 * 109.47265 * 59.99945 * 29 27 26 49 49 H 1.08997 * 109.47077 * 180.02562 * 29 27 26 50 50 H 1.09002 * 109.47034 * 300.00045 * 29 27 26 51 51 H 1.09008 * 109.46362 * 58.27830 * 30 8 7 52 52 H 1.08998 * 109.46569 * 178.24210 * 30 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0094 1.0179 -0.1454 5 6 3.1577 -0.8921 -1.1339 6 6 4.6877 -0.9328 -1.0901 7 6 5.1405 -1.4448 0.2791 8 7 4.6264 -0.5570 1.3297 9 6 5.1252 -0.9162 2.5716 10 7 4.4887 -1.5843 3.5044 11 7 5.2518 -1.7418 4.5266 12 6 6.4110 -1.1887 4.3082 13 6 7.5788 -1.1564 5.2602 14 6 8.4611 -2.3844 5.0269 15 1 8.7561 -2.4259 3.9783 16 8 7.7314 -3.5661 5.3635 17 6 9.6917 -2.2903 5.8916 18 1 9.8309 -1.4396 6.5422 19 6 10.6406 -3.2900 5.8514 20 7 10.4714 -4.3257 5.0587 21 14 12.1656 -3.1738 6.9237 22 1 12.1175 -1.9204 7.7187 23 1 12.2159 -4.3405 7.8410 24 1 13.3762 -3.1677 6.0637 25 7 6.3693 -0.6370 3.0578 26 6 7.4401 0.0968 2.3786 27 6 7.2362 1.5997 2.5809 28 6 7.4037 1.9421 4.0627 29 6 8.2717 2.3700 1.7592 30 6 3.1580 -0.5385 1.3376 31 1 -1.0499 -0.0011 -0.0003 32 1 2.8313 -0.4870 -2.0919 33 1 2.7627 -1.9004 -1.0103 34 1 5.0832 0.0698 -1.2528 35 1 5.0570 -1.6004 -1.8687 36 1 6.2296 -1.4615 0.3186 37 1 4.7559 -2.4528 0.4351 38 1 7.2114 -1.1627 6.2864 39 1 8.1624 -0.2519 5.0888 40 1 7.4365 -3.5973 6.2839 41 1 11.1390 -5.0287 5.0302 42 1 8.4034 -0.1984 2.7946 43 1 7.4187 -0.1325 1.3132 44 1 6.2340 1.8775 2.2549 45 1 7.3362 3.0219 4.1960 46 1 6.6174 1.4549 4.6394 47 1 8.3769 1.5935 4.4084 48 1 8.1524 2.1260 0.7037 49 1 8.1268 3.4406 1.9037 50 1 9.2740 2.0921 2.0853 51 1 2.7829 -1.5507 1.4888 52 1 2.8073 0.1031 2.1460 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001517273471.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:59 Heat of formation + Delta-G solvation = 50.927048 kcal Electronic energy + Delta-G solvation = -31900.141053 eV Core-core repulsion = 27901.221298 eV Total energy + Delta-G solvation = -3998.919755 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -44.03143 -40.34444 -38.18406 -37.78783 -35.84294 -34.29788 -34.22975 -33.77863 -32.53603 -31.19115 -29.66079 -28.24485 -27.81032 -27.10264 -25.68669 -24.86570 -23.41733 -22.62923 -21.84716 -21.07044 -20.88914 -19.25048 -19.08139 -18.03598 -17.40595 -17.36527 -16.65321 -16.45315 -16.20883 -15.92547 -15.72778 -15.53555 -15.29852 -15.01532 -14.92308 -14.83050 -14.58049 -14.47722 -13.93994 -13.65089 -13.34918 -13.14721 -13.06587 -12.91463 -12.85073 -12.76300 -12.62871 -12.59924 -12.36906 -12.23283 -12.02542 -11.98974 -11.93884 -11.82314 -11.66480 -11.52260 -11.23762 -11.12221 -10.98294 -10.89602 -10.71835 -10.62468 -10.16399 -9.39648 -8.13029 -6.39411 0.77564 1.20930 1.42061 1.44802 1.56034 1.83341 1.85321 1.90690 2.40644 2.60313 3.14114 3.39453 3.47874 3.57030 3.68970 3.75442 3.79018 3.88072 3.94409 4.02101 4.09617 4.21266 4.22932 4.26784 4.31539 4.41212 4.49573 4.53387 4.55499 4.64096 4.70137 4.73772 4.79603 4.81865 4.85276 4.89421 4.98042 4.99785 5.04613 5.10212 5.13185 5.16246 5.18692 5.34851 5.36244 5.42623 5.55055 5.57754 5.63972 5.70879 6.03389 6.20475 6.69638 6.72077 7.33867 7.53288 7.78120 8.91746 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014780 B = 0.002914 C = 0.002741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.021975 B = 9608.037649 C =10211.673175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.215 4.215 3 C 0.033 3.967 4 H 0.113 0.887 5 C -0.109 4.109 6 C -0.102 4.102 7 C 0.051 3.949 8 N -0.438 5.438 9 C 0.342 3.658 10 N -0.359 5.359 11 N -0.324 5.324 12 C 0.211 3.789 13 C -0.049 4.049 14 C 0.244 3.756 15 H 0.018 0.982 16 O -0.580 6.580 17 C -0.578 4.578 18 H 0.070 0.930 19 C 0.026 3.974 20 N -0.901 5.901 21 Si 0.961 3.039 22 H -0.258 1.258 23 H -0.285 1.285 24 H -0.279 1.279 25 N -0.462 5.462 26 C 0.106 3.894 27 C -0.095 4.095 28 C -0.151 4.151 29 C -0.137 4.137 30 C 0.089 3.911 31 H 0.245 0.755 32 H 0.094 0.906 33 H 0.057 0.943 34 H 0.094 0.906 35 H 0.098 0.902 36 H 0.078 0.922 37 H 0.030 0.970 38 H 0.090 0.910 39 H 0.101 0.899 40 H 0.357 0.643 41 H 0.260 0.740 42 H 0.091 0.909 43 H 0.108 0.892 44 H 0.076 0.924 45 H 0.075 0.925 46 H 0.028 0.972 47 H 0.061 0.939 48 H 0.071 0.929 49 H 0.073 0.927 50 H 0.059 0.941 51 H 0.037 0.963 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.233 15.524 -14.970 23.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.216 4.216 3 C 0.015 3.985 4 H 0.131 0.869 5 C -0.147 4.147 6 C -0.139 4.139 7 C -0.076 4.076 8 N -0.163 5.163 9 C -0.015 4.015 10 N -0.203 5.203 11 N -0.163 5.163 12 C -0.058 4.058 13 C -0.089 4.089 14 C 0.185 3.815 15 H 0.036 0.964 16 O -0.384 6.384 17 C -0.616 4.616 18 H 0.089 0.911 19 C -0.176 4.176 20 N -0.538 5.538 21 Si 0.785 3.215 22 H -0.181 1.181 23 H -0.211 1.211 24 H -0.205 1.205 25 N -0.155 5.155 26 C -0.015 4.015 27 C -0.115 4.115 28 C -0.209 4.209 29 C -0.195 4.195 30 C -0.039 4.039 31 H 0.262 0.738 32 H 0.112 0.888 33 H 0.076 0.924 34 H 0.112 0.888 35 H 0.117 0.883 36 H 0.096 0.904 37 H 0.048 0.952 38 H 0.108 0.892 39 H 0.119 0.881 40 H 0.202 0.798 41 H 0.069 0.931 42 H 0.109 0.891 43 H 0.126 0.874 44 H 0.094 0.906 45 H 0.094 0.906 46 H 0.048 0.952 47 H 0.080 0.920 48 H 0.090 0.910 49 H 0.092 0.908 50 H 0.078 0.922 51 H 0.055 0.945 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -10.972 14.960 -15.099 23.920 hybrid contribution 1.160 -0.596 1.023 1.657 sum -9.812 14.364 -14.076 22.377 Atomic orbital electron populations 1.25701 0.96789 0.99761 0.98662 1.23142 0.94673 1.01613 1.02132 1.18234 0.84359 1.02112 0.93810 0.86909 1.21634 0.95603 0.99269 0.98164 1.21598 0.95062 1.03878 0.93376 1.22437 1.00344 0.93282 0.91510 1.58751 1.10189 1.49853 0.97531 1.22573 0.84971 0.98681 0.95258 1.74421 1.27241 1.18360 1.00264 1.73882 1.01467 1.20756 1.20180 1.25027 0.97643 0.96761 0.86358 1.20994 0.90043 1.02198 0.95709 1.19125 0.87484 0.80198 0.94698 0.96398 1.86528 1.75399 1.45069 1.31381 1.21994 1.05692 1.07609 1.26298 0.91142 1.25909 1.01048 0.94603 0.96080 1.70244 1.35439 1.09819 1.38322 0.85491 0.78899 0.78438 0.78636 1.18140 1.21118 1.20518 1.46301 1.13005 1.42634 1.13555 1.22349 0.88091 0.92561 0.98517 1.21370 1.01556 0.91683 0.96849 1.21952 1.01258 1.02327 0.95332 1.21727 0.97715 1.00266 0.99758 1.21868 0.83086 1.00595 0.98310 0.73829 0.88782 0.92400 0.88791 0.88325 0.90377 0.95200 0.89157 0.88066 0.79819 0.93093 0.89069 0.87370 0.90569 0.90594 0.95231 0.92044 0.91041 0.90817 0.92156 0.94458 0.91260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.19 19.25 74.32 1.43 -1.76 16 2 C -0.22 -4.20 12.57 31.12 0.39 -3.81 16 3 C 0.03 0.60 2.73 -12.55 -0.03 0.57 16 4 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 5 C -0.11 -1.57 5.24 30.67 0.16 -1.41 16 6 C -0.10 -1.37 6.09 30.65 0.19 -1.18 16 7 C 0.05 1.13 5.38 86.32 0.46 1.59 16 8 N -0.44 -11.34 4.67 -706.15 -3.30 -14.64 16 9 C 0.34 11.86 6.86 260.11 1.78 13.65 16 10 N -0.36 -15.21 11.48 -58.00 -0.67 -15.87 16 11 N -0.32 -14.76 12.18 -49.54 -0.60 -15.36 16 12 C 0.21 8.56 6.05 137.64 0.83 9.39 16 13 C -0.05 -1.99 4.80 29.85 0.14 -1.85 16 14 C 0.24 12.18 2.81 29.85 0.08 12.26 16 15 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 16 O -0.58 -31.58 12.49 -148.98 -1.86 -33.44 16 17 C -0.58 -30.07 8.76 25.60 0.22 -29.85 16 18 H 0.07 3.44 7.74 -2.91 -0.02 3.42 16 19 C 0.03 1.41 5.40 84.66 0.46 1.87 16 20 N -0.90 -53.14 12.84 21.45 0.28 -52.86 16 21 Si 0.96 41.89 29.54 68.60 2.03 43.91 16 22 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 23 H -0.29 -12.50 7.11 99.48 0.71 -11.79 16 24 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 25 N -0.46 -15.62 2.53 -514.84 -1.30 -16.93 16 26 C 0.11 2.73 5.36 86.38 0.46 3.19 16 27 C -0.10 -1.95 3.12 -10.79 -0.03 -1.98 16 28 C -0.15 -3.44 7.88 71.98 0.57 -2.87 16 29 C -0.14 -2.00 9.19 71.98 0.66 -1.34 16 30 C 0.09 2.23 4.16 86.33 0.36 2.59 16 31 H 0.25 2.18 7.80 -4.42 -0.03 2.14 16 32 H 0.09 1.01 8.14 -2.38 -0.02 0.99 16 33 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.10 1.01 8.14 -2.38 -0.02 0.99 16 36 H 0.08 1.74 6.76 -2.39 -0.02 1.72 16 37 H 0.03 0.79 8.14 -2.38 -0.02 0.77 16 38 H 0.09 3.57 8.14 -2.39 -0.02 3.55 16 39 H 0.10 3.58 5.46 -2.39 -0.01 3.57 16 40 H 0.36 17.64 9.04 -74.05 -0.67 16.97 16 41 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 42 H 0.09 2.56 7.58 -2.38 -0.02 2.54 16 43 H 0.11 2.33 6.78 -2.39 -0.02 2.32 16 44 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 45 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 46 H 0.03 0.81 6.95 -2.39 -0.02 0.80 16 47 H 0.06 1.43 7.01 -2.38 -0.02 1.41 16 48 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 49 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 50 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 51 H 0.04 1.10 8.08 -2.38 -0.02 1.08 16 52 H 0.07 1.94 8.10 -2.39 -0.02 1.92 16 Total: -1.00 -73.64 418.16 2.95 -70.69 By element: Atomic # 1 Polarization: 35.22 SS G_CDS: 0.24 Total: 35.45 kcal Atomic # 6 Polarization: -9.09 SS G_CDS: 8.14 Total: -0.95 kcal Atomic # 7 Polarization: -110.07 SS G_CDS: -5.59 Total: -115.67 kcal Atomic # 8 Polarization: -31.58 SS G_CDS: -1.86 Total: -33.44 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.03 Total: 43.91 kcal Total: -73.64 2.95 -70.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001517273471.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.616 kcal (2) G-P(sol) polarization free energy of solvation -73.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds