Wall clock time and date at job start Wed Apr 1 2020 04:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.47197 * 2 1 4 4 C 1.50700 * 109.46963 * 240.00643 * 2 1 3 5 5 H 1.08007 * 119.99487 * 239.99952 * 4 2 1 6 6 C 1.37871 * 120.00286 * 60.00086 * 4 2 1 7 7 N 1.31512 * 120.00148 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99823 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47639 * 59.99696 * 8 6 4 10 10 H 1.48506 * 109.46934 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.46928 * 299.99266 * 8 6 4 12 12 C 1.50692 * 109.47509 * 120.00176 * 2 1 3 13 13 N 1.30296 * 126.34923 * 113.86805 * 12 2 1 14 14 N 1.28528 * 110.05173 * 179.97438 * 13 12 2 15 15 C 1.31206 * 109.86445 * 0.02562 * 14 13 12 16 16 N 1.38585 * 126.47743 * 179.97438 * 15 14 13 17 17 C 1.46852 * 110.99631 * 25.60013 * 16 15 14 18 18 C 1.50136 * 110.27305 * 287.53904 * 17 16 15 19 19 C 1.29825 * 123.28945 * 342.94747 * 18 17 16 20 20 C 1.50311 * 122.88547 * 0.39643 * 19 18 17 21 21 C 1.47221 * 110.98495 * 262.66635 * 16 15 14 22 22 N 1.36455 * 107.05560 * 0.22676 * 15 14 13 23 23 C 1.46502 * 127.13937 * 179.77733 * 22 15 14 24 24 C 1.53001 * 109.47198 * 84.44970 * 23 22 15 25 25 H 1.08993 * 110.45838 * 50.70650 * 24 23 22 26 26 C 1.54509 * 110.50925 * 173.31585 * 24 23 22 27 27 C 1.54474 * 104.06565 * 118.64228 * 26 24 23 28 28 O 1.44424 * 104.80133 * 23.97484 * 27 26 24 29 29 C 1.44420 * 105.27675 * 319.48819 * 28 27 26 30 30 H 1.09001 * 109.46938 * 304.32357 * 1 2 3 31 31 H 1.08998 * 109.47147 * 64.32184 * 1 2 3 32 32 H 1.08996 * 109.46740 * 184.32320 * 1 2 3 33 33 H 1.08996 * 109.47094 * 173.21765 * 3 2 1 34 34 H 1.09002 * 109.47432 * 293.22313 * 3 2 1 35 35 H 1.09006 * 109.46842 * 53.21761 * 3 2 1 36 36 H 0.96999 * 120.00148 * 179.97438 * 7 6 4 37 37 H 1.08993 * 109.33491 * 167.29006 * 17 16 15 38 38 H 1.08997 * 109.33386 * 47.78372 * 17 16 15 39 39 H 1.08004 * 118.35812 * 162.97408 * 18 17 16 40 40 H 1.07995 * 118.55993 * 180.37641 * 19 18 17 41 41 H 1.09002 * 109.42881 * 103.55740 * 20 19 18 42 42 H 1.09004 * 109.42609 * 223.39757 * 20 19 18 43 43 H 1.08999 * 109.63546 * 294.89236 * 21 16 15 44 44 H 1.08999 * 109.64112 * 174.28275 * 21 16 15 45 45 H 1.08999 * 109.47158 * 204.44676 * 23 22 15 46 46 H 1.09000 * 109.46772 * 324.44841 * 23 22 15 47 47 H 1.09004 * 110.51090 * 237.28714 * 26 24 23 48 48 H 1.09004 * 110.50978 * 359.85583 * 26 24 23 49 49 H 1.09003 * 110.37585 * 142.80671 * 27 26 24 50 50 H 1.09003 * 110.37232 * 265.14644 * 27 26 24 51 51 H 1.08998 * 110.37230 * 281.68119 * 29 28 27 52 52 H 1.09004 * 110.36886 * 159.34189 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2391 -2.4827 7 7 0.9428 0.8299 -2.6034 8 14 2.3214 -1.1201 -4.0080 9 1 1.8259 -2.5200 -4.0079 10 1 1.8260 -0.4202 -5.2205 11 1 3.8064 -1.1205 -4.0082 12 6 2.0324 -0.7104 1.2303 13 7 2.6903 -1.8348 1.2584 14 7 2.9644 -2.1547 2.4727 15 6 2.4919 -1.2446 3.2911 16 7 2.5925 -1.2476 4.6733 17 6 3.7615 -2.0193 5.1141 18 6 3.5193 -3.4880 4.9182 19 6 2.3391 -3.9975 4.7361 20 6 1.0884 -3.1649 4.6939 21 6 1.3675 -1.7828 5.2899 22 7 1.8778 -0.2973 2.5247 23 6 1.1971 0.9131 2.9914 24 6 2.2239 2.0286 3.1970 25 1 2.8501 2.1379 2.3116 26 6 1.5162 3.3617 3.5276 27 6 2.0382 3.7249 4.9354 28 8 3.3038 3.0384 5.0480 29 6 3.0897 1.7440 4.4443 30 1 -0.3633 0.5795 0.8487 31 1 -0.3633 0.4453 -0.9262 32 1 -0.3633 -1.0247 0.0775 33 1 3.1233 1.4449 0.1214 34 1 1.7792 1.9202 -0.9444 35 1 1.5810 1.9902 0.8231 36 1 0.7088 1.1615 -3.4843 37 1 3.9472 -1.8218 6.1698 38 1 4.6333 -1.7168 4.5341 39 1 4.3693 -4.1542 4.9297 40 1 2.2522 -5.0664 4.6091 41 1 0.7611 -3.0545 3.6600 42 1 0.3054 -3.6573 5.2707 43 1 0.5305 -1.1171 5.0793 44 1 1.5077 -1.8701 6.3673 45 1 0.4637 1.2269 2.2486 46 1 0.6925 0.7053 3.9350 47 1 1.7944 4.1308 2.8069 48 1 0.4347 3.2266 3.5420 49 1 2.1818 4.8020 5.0207 50 1 1.3457 3.3718 5.6996 51 1 2.5585 1.0872 5.1332 52 1 4.0412 1.2995 4.1523 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001519617715.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:49 Heat of formation + Delta-G solvation = 71.309773 kcal Electronic energy + Delta-G solvation = -33568.494550 eV Core-core repulsion = 29570.458656 eV Total energy + Delta-G solvation = -3998.035894 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.45470 -39.40176 -39.21044 -35.92826 -34.87447 -32.85793 -31.95698 -31.15299 -30.94498 -29.25104 -28.36476 -26.23474 -25.94100 -25.17718 -24.50425 -23.43657 -22.86292 -21.71185 -20.84715 -20.49538 -19.06224 -18.29819 -16.85528 -16.57788 -16.12652 -15.91770 -15.76251 -15.31417 -15.04910 -14.84026 -14.71285 -14.37306 -14.04630 -13.74082 -13.44067 -13.06787 -12.94333 -12.74580 -12.62953 -12.44083 -12.07382 -12.06004 -11.76241 -11.66657 -11.45884 -11.33659 -11.19282 -11.11164 -10.94425 -10.75648 -10.74198 -10.54523 -10.46170 -10.14508 -10.06580 -9.98429 -9.79305 -9.67457 -9.44692 -9.07844 -8.86290 -8.63338 -8.38168 -7.80415 -6.03784 -4.09900 2.40203 2.44264 2.77000 3.36093 3.38267 3.45295 3.69758 3.92337 4.00734 4.43283 4.54913 4.67524 4.74833 4.81685 4.90059 4.96590 5.00524 5.10614 5.12268 5.25127 5.25721 5.40855 5.44222 5.46819 5.51349 5.57872 5.60137 5.63609 5.69733 5.72759 5.75983 5.91880 5.99407 6.00373 6.08239 6.18420 6.19952 6.45588 6.56766 6.61734 6.62639 6.66388 6.73202 6.79714 6.81345 7.02277 7.11623 7.25249 7.32760 7.61938 7.80271 7.83312 8.09119 8.31020 8.97097 9.53292 9.67094 10.99113 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009748 B = 0.004869 C = 0.003593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2871.841868 B = 5749.766221 C = 7791.602151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.147 3.853 3 C -0.138 4.138 4 C -0.489 4.489 5 H 0.076 0.924 6 C 0.062 3.938 7 N -0.895 5.895 8 Si 0.900 3.100 9 H -0.276 1.276 10 H -0.289 1.289 11 H -0.277 1.277 12 C 0.242 3.758 13 N -0.290 5.290 14 N -0.310 5.310 15 C 0.308 3.692 16 N -0.448 5.448 17 C 0.100 3.900 18 C -0.167 4.167 19 C -0.142 4.142 20 C -0.122 4.122 21 C 0.056 3.944 22 N -0.475 5.475 23 C 0.122 3.878 24 C -0.140 4.140 25 H 0.098 0.902 26 C -0.147 4.147 27 C 0.046 3.954 28 O -0.380 6.380 29 C 0.057 3.943 30 H 0.009 0.991 31 H 0.100 0.900 32 H 0.029 0.971 33 H 0.026 0.974 34 H 0.099 0.901 35 H 0.017 0.983 36 H 0.261 0.739 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.108 0.892 40 H 0.102 0.898 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.076 0.924 44 H 0.089 0.911 45 H 0.105 0.895 46 H 0.083 0.917 47 H 0.081 0.919 48 H 0.079 0.921 49 H 0.088 0.912 50 H 0.057 0.943 51 H 0.079 0.921 52 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.959 2.342 17.804 18.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.144 3.856 3 C -0.196 4.196 4 C -0.528 4.528 5 H 0.094 0.906 6 C -0.138 4.138 7 N -0.534 5.534 8 Si 0.728 3.272 9 H -0.202 1.202 10 H -0.215 1.215 11 H -0.202 1.202 12 C -0.025 4.025 13 N -0.128 5.128 14 N -0.153 5.153 15 C -0.048 4.048 16 N -0.171 5.171 17 C -0.027 4.027 18 C -0.187 4.187 19 C -0.160 4.160 20 C -0.160 4.160 21 C -0.072 4.072 22 N -0.169 5.169 23 C -0.001 4.001 24 C -0.160 4.160 25 H 0.116 0.884 26 C -0.185 4.185 27 C -0.030 4.030 28 O -0.299 6.299 29 C -0.020 4.020 30 H 0.027 0.973 31 H 0.118 0.882 32 H 0.048 0.952 33 H 0.046 0.954 34 H 0.117 0.883 35 H 0.036 0.964 36 H 0.071 0.929 37 H 0.110 0.890 38 H 0.107 0.893 39 H 0.126 0.874 40 H 0.120 0.880 41 H 0.092 0.908 42 H 0.093 0.907 43 H 0.094 0.906 44 H 0.108 0.892 45 H 0.123 0.877 46 H 0.102 0.898 47 H 0.100 0.900 48 H 0.098 0.902 49 H 0.107 0.893 50 H 0.075 0.925 51 H 0.097 0.903 52 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.069 1.760 17.443 17.564 hybrid contribution -0.638 -0.254 -0.772 1.033 sum -1.707 1.506 16.671 16.825 Atomic orbital electron populations 1.21939 0.96506 0.99008 1.01591 1.16889 0.92327 0.91429 0.84939 1.22059 0.98050 0.96988 1.02495 1.21039 1.31016 1.12332 0.88419 0.90611 1.24859 0.95006 0.95041 0.98907 1.69747 1.37161 1.23002 1.23530 0.86510 0.79314 0.79776 0.81598 1.20195 1.21461 1.20222 1.26166 0.97496 0.93956 0.84891 1.74127 1.15658 1.12005 1.10990 1.74674 1.22501 1.21089 0.97045 1.22210 1.02358 0.89869 0.90378 1.59465 1.05024 1.52197 1.00455 1.20928 0.91872 0.89013 1.00857 1.22444 0.97606 0.97194 1.01436 1.21827 0.94049 0.99290 1.00877 1.21007 0.97124 0.95805 1.02054 1.22360 0.91367 0.94322 0.99159 1.46298 1.44136 1.19280 1.07224 1.21968 0.94610 0.82374 1.01179 1.23029 0.97776 0.94107 1.01065 0.88399 1.22925 1.00873 0.96871 0.97832 1.23366 0.86075 0.97920 0.95689 1.89109 1.31534 1.28303 1.80910 1.23584 1.00440 0.85295 0.92684 0.97250 0.88155 0.95182 0.95445 0.88268 0.96370 0.92875 0.88951 0.89308 0.87411 0.87961 0.90757 0.90713 0.90575 0.89236 0.87661 0.89829 0.90037 0.90233 0.89343 0.92495 0.90328 0.89654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.92 8.19 37.16 0.30 -2.62 16 2 C 0.15 3.42 0.47 -156.81 -0.07 3.35 16 3 C -0.14 -3.01 7.16 37.16 0.27 -2.74 16 4 C -0.49 -13.05 7.91 -34.44 -0.27 -13.32 16 5 H 0.08 2.16 6.96 -52.48 -0.37 1.79 16 6 C 0.06 1.62 5.12 -17.82 -0.09 1.53 16 7 N -0.89 -23.25 9.30 55.43 0.52 -22.73 16 8 Si 0.90 21.22 29.54 -169.99 -5.02 16.19 16 9 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 10 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 C 0.24 5.33 6.33 -154.01 -0.98 4.35 16 13 N -0.29 -6.98 11.00 32.99 0.36 -6.62 16 14 N -0.31 -6.48 9.85 30.31 0.30 -6.18 16 15 C 0.31 5.31 4.88 -318.88 -1.56 3.76 16 16 N -0.45 -5.94 3.21 -175.94 -0.57 -6.50 16 17 C 0.10 1.23 5.71 -5.27 -0.03 1.20 16 18 C -0.17 -2.14 8.82 -35.97 -0.32 -2.45 16 19 C -0.14 -1.87 9.25 -35.88 -0.33 -2.20 16 20 C -0.12 -1.54 5.58 -28.03 -0.16 -1.69 16 21 C 0.06 0.62 6.02 -3.61 -0.02 0.60 16 22 N -0.48 -8.42 2.78 -114.08 -0.32 -8.73 16 23 C 0.12 1.72 4.43 -4.04 -0.02 1.70 16 24 C -0.14 -1.87 2.58 -89.05 -0.23 -2.10 16 25 H 0.10 1.57 6.40 -51.93 -0.33 1.24 16 26 C -0.15 -1.56 6.74 -25.17 -0.17 -1.73 16 27 C 0.05 0.47 7.63 37.93 0.29 0.76 16 28 O -0.38 -5.15 11.65 -35.23 -0.41 -5.56 16 29 C 0.06 0.75 6.18 37.93 0.23 0.98 16 30 H 0.01 0.17 5.81 -51.93 -0.30 -0.14 16 31 H 0.10 2.42 5.97 -51.93 -0.31 2.11 16 32 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.03 0.61 8.06 -51.93 -0.42 0.19 16 34 H 0.10 2.39 5.92 -51.93 -0.31 2.08 16 35 H 0.02 0.33 4.57 -51.93 -0.24 0.09 16 36 H 0.26 6.59 8.31 -40.82 -0.34 6.26 16 37 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.09 1.21 8.02 -51.93 -0.42 0.80 16 39 H 0.11 1.27 8.06 -52.48 -0.42 0.85 16 40 H 0.10 1.28 8.06 -52.49 -0.42 0.86 16 41 H 0.07 1.21 7.37 -51.93 -0.38 0.83 16 42 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 43 H 0.08 0.81 7.23 -51.93 -0.38 0.44 16 44 H 0.09 0.80 8.08 -51.93 -0.42 0.38 16 45 H 0.11 1.54 4.48 -51.93 -0.23 1.31 16 46 H 0.08 0.99 7.00 -51.93 -0.36 0.62 16 47 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 48 H 0.08 0.72 7.73 -51.93 -0.40 0.31 16 49 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 50 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 51 H 0.08 0.98 6.33 -51.93 -0.33 0.65 16 52 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 383.00 15.07 5.77 5.77 Total: -1.00 -29.58 383.00 -10.65 -40.22 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -8.13 Total: 4.76 kcal Atomic # 6 Polarization: -7.47 SS G_CDS: -3.15 Total: -10.62 kcal Atomic # 7 Polarization: -51.06 SS G_CDS: 0.29 Total: -50.77 kcal Atomic # 8 Polarization: -5.15 SS G_CDS: -0.41 Total: -5.56 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -29.58 -10.65 -40.22 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001519617715.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.533 kcal (2) G-P(sol) polarization free energy of solvation -29.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds