Wall clock time and date at job start Wed Apr 1 2020 05:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50703 * 120.00098 * 2 1 4 4 C 1.50702 * 120.00140 * 180.02562 * 2 1 3 5 5 N 1.46499 * 109.47244 * 94.91724 * 4 2 1 6 6 C 1.36738 * 127.13828 * 265.48679 * 5 4 2 7 7 C 1.50702 * 126.34539 * 0.02562 * 6 5 4 8 8 C 1.52995 * 109.47546 * 274.35703 * 7 6 5 9 9 C 1.50696 * 109.47387 * 175.12880 * 8 7 6 10 10 H 1.08006 * 119.99757 * 0.02562 * 9 8 7 11 11 C 1.37876 * 119.99800 * 180.02562 * 9 8 7 12 12 N 1.31507 * 120.00479 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 119.99744 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47109 * 59.99734 * 13 11 9 15 15 H 1.48497 * 109.47345 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.46942 * 300.00395 * 13 11 9 17 17 N 1.30295 * 107.30589 * 179.75484 * 6 5 4 18 18 N 1.28530 * 110.05621 * 0.23938 * 17 6 5 19 19 C 1.31218 * 109.85729 * 0.02562 * 18 17 6 20 20 N 1.38579 * 126.47440 * 180.02562 * 19 18 17 21 21 C 1.46842 * 111.00195 * 255.79197 * 20 19 18 22 22 C 1.50146 * 110.27682 * 174.30986 * 21 20 19 23 23 C 1.29822 * 123.28351 * 342.97735 * 22 21 20 24 24 C 1.50695 * 118.55086 * 180.34990 * 23 22 21 25 25 O 1.42900 * 109.47292 * 359.97438 * 24 23 22 26 26 C 1.42900 * 113.99849 * 180.02562 * 25 24 23 27 27 C 1.50308 * 122.89357 * 0.36779 * 23 22 21 28 28 C 1.47249 * 110.99773 * 18.72358 * 20 19 18 29 29 H 1.08002 * 119.99991 * 5.19697 * 1 2 3 30 30 H 1.07995 * 119.99615 * 185.20394 * 1 2 3 31 31 H 1.08997 * 109.47130 * 184.76098 * 3 2 1 32 32 H 1.08997 * 109.47576 * 304.77117 * 3 2 1 33 33 H 1.09004 * 109.46553 * 64.76571 * 3 2 1 34 34 H 1.08998 * 109.46702 * 334.92088 * 4 2 1 35 35 H 1.08992 * 109.47475 * 214.91721 * 4 2 1 36 36 H 1.09010 * 109.46520 * 154.35730 * 7 6 5 37 37 H 1.08999 * 109.47188 * 34.36446 * 7 6 5 38 38 H 1.09000 * 109.46470 * 55.13249 * 8 7 6 39 39 H 1.09000 * 109.47097 * 295.13501 * 8 7 6 40 40 H 0.97001 * 120.00310 * 180.02562 * 12 11 9 41 41 H 1.09003 * 109.33303 * 294.56233 * 21 20 19 42 42 H 1.09001 * 109.33170 * 54.22474 * 21 20 19 43 43 H 1.07996 * 118.35341 * 162.94714 * 22 21 20 44 44 H 1.09005 * 109.47558 * 119.99902 * 24 23 22 45 45 H 1.09003 * 109.47050 * 239.99269 * 24 23 22 46 46 H 1.09008 * 109.46885 * 180.02562 * 26 25 24 47 47 H 1.09004 * 109.47246 * 299.99619 * 26 25 24 48 48 H 1.08990 * 109.47350 * 60.00306 * 26 25 24 49 49 H 1.08993 * 109.42941 * 103.55810 * 27 23 22 50 50 H 1.09002 * 109.42765 * 223.46094 * 27 23 22 51 51 H 1.08999 * 109.63365 * 287.49873 * 28 20 19 52 52 H 1.08994 * 109.63378 * 48.11423 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 7 2.4103 -1.6682 -1.3769 6 6 1.7064 -2.4854 -2.2173 7 6 0.4127 -3.1908 -1.9011 8 6 0.7133 -4.5210 -1.2077 9 6 -0.5791 -5.1703 -0.7845 10 1 -1.5209 -4.6830 -0.9900 11 6 -0.5594 -6.3863 -0.1350 12 7 0.5873 -6.9794 0.1157 13 14 -2.1615 -7.1915 0.3889 14 1 -3.0063 -7.4373 -0.8074 15 1 -1.8697 -8.4825 1.0621 16 1 -2.8822 -6.2947 1.3279 17 7 2.3584 -2.5366 -3.3442 18 7 3.4208 -1.8169 -3.2718 19 6 3.5045 -1.2638 -2.0848 20 7 4.5105 -0.4224 -1.6371 21 6 5.4213 -1.1287 -0.7273 22 6 6.5796 -0.2460 -0.3618 23 6 6.9018 0.8196 -1.0297 24 6 8.0912 1.6240 -0.5724 25 8 8.6648 1.0109 0.5840 26 6 9.8054 1.6990 1.1012 27 6 6.1405 1.2865 -2.2386 28 6 5.2622 0.1490 -2.7669 29 1 -0.5400 0.9315 -0.0847 30 1 -0.5399 -0.9314 0.0848 31 1 3.1321 1.1077 -0.0853 32 1 1.7377 1.9129 -0.8441 33 1 1.8657 1.8388 0.9297 34 1 1.4391 -2.0853 0.4347 35 1 2.9749 -1.1987 0.5876 36 1 -0.1342 -3.3782 -2.8253 37 1 -0.1904 -2.5658 -1.2425 38 1 1.3339 -4.3409 -0.3299 39 1 1.2417 -5.1791 -1.8975 40 1 0.6012 -7.8351 0.5723 41 1 4.8818 -1.4094 0.1773 42 1 5.7959 -2.0273 -1.2175 43 1 7.1741 -0.5106 0.5001 44 1 8.8332 1.6611 -1.3701 45 1 7.7720 2.6366 -0.3259 46 1 10.1820 1.1708 1.9772 47 1 10.5832 1.7377 0.3385 48 1 9.5214 2.7130 1.3823 49 1 5.5115 2.1339 -1.9660 50 1 6.8432 1.5911 -3.0143 51 1 5.8898 -0.6208 -3.2160 52 1 4.5666 0.5385 -3.5102 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001524088110.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:03 Heat of formation + Delta-G solvation = 69.799457 kcal Electronic energy + Delta-G solvation = -31144.989860 eV Core-core repulsion = 27146.888474 eV Total energy + Delta-G solvation = -3998.101386 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.60226 -39.55333 -38.02342 -36.72712 -34.59608 -33.92938 -33.03889 -31.62057 -31.11157 -29.15129 -27.75068 -27.41452 -26.77296 -26.07738 -25.20291 -23.98066 -23.15877 -21.76478 -20.89123 -20.05131 -18.68899 -17.90113 -17.25419 -16.76995 -16.51636 -16.30294 -16.18604 -15.76779 -15.49150 -14.92648 -14.77013 -14.50461 -14.37098 -14.06402 -13.68522 -13.37207 -13.32264 -13.26116 -13.08373 -12.96235 -12.52300 -12.35307 -12.20337 -12.03762 -11.81672 -11.77805 -11.48354 -11.33004 -11.17398 -11.05610 -10.96923 -10.83698 -10.70730 -10.33671 -10.20825 -10.01583 -9.87919 -9.68923 -9.26921 -9.19462 -9.17668 -8.93692 -8.42078 -8.01261 -6.06482 -4.10879 1.87643 1.95191 2.17854 2.78590 3.28412 3.30099 3.33392 3.35333 3.37658 3.82994 4.37321 4.40244 4.66576 4.70317 4.74475 4.81824 4.89942 4.93871 4.97624 5.03656 5.06300 5.09324 5.21299 5.23201 5.28242 5.29536 5.31817 5.38027 5.47008 5.53386 5.57945 5.63488 5.66788 5.73490 5.78481 5.89564 5.93838 6.01076 6.14642 6.35043 6.41019 6.47821 6.52634 6.54174 6.66927 6.70154 6.78819 6.91495 6.98782 7.48727 7.53504 7.67575 7.90621 8.28229 8.95025 9.22541 9.53890 11.04498 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013957 B = 0.002513 C = 0.002445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.646503 B =11138.776973 C =11448.463716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.148 4.148 3 C -0.116 4.116 4 C 0.145 3.855 5 N -0.463 5.463 6 C 0.218 3.782 7 C -0.033 4.033 8 C 0.032 3.968 9 C -0.524 4.524 10 H 0.058 0.942 11 C 0.060 3.940 12 N -0.892 5.892 13 Si 0.894 3.106 14 H -0.275 1.275 15 H -0.287 1.287 16 H -0.276 1.276 17 N -0.299 5.299 18 N -0.321 5.321 19 C 0.331 3.669 20 N -0.446 5.446 21 C 0.083 3.917 22 C -0.129 4.129 23 C -0.132 4.132 24 C 0.099 3.901 25 O -0.389 6.389 26 C 0.032 3.968 27 C -0.074 4.074 28 C 0.073 3.927 29 H 0.101 0.899 30 H 0.108 0.892 31 H 0.076 0.924 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.109 0.891 35 H 0.094 0.906 36 H 0.088 0.912 37 H 0.070 0.930 38 H 0.013 0.987 39 H 0.025 0.975 40 H 0.262 0.738 41 H 0.089 0.911 42 H 0.061 0.939 43 H 0.131 0.869 44 H 0.059 0.941 45 H 0.059 0.941 46 H 0.086 0.914 47 H 0.041 0.959 48 H 0.041 0.959 49 H 0.082 0.918 50 H 0.081 0.919 51 H 0.057 0.943 52 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.990 21.849 2.290 26.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.149 4.149 3 C -0.172 4.172 4 C 0.023 3.977 5 N -0.157 5.157 6 C -0.049 4.049 7 C -0.073 4.073 8 C -0.006 4.006 9 C -0.563 4.563 10 H 0.077 0.923 11 C -0.142 4.142 12 N -0.531 5.531 13 Si 0.722 3.278 14 H -0.201 1.201 15 H -0.213 1.213 16 H -0.202 1.202 17 N -0.138 5.138 18 N -0.165 5.165 19 C -0.026 4.026 20 N -0.171 5.171 21 C -0.044 4.044 22 C -0.147 4.147 23 C -0.133 4.133 24 C 0.023 3.977 25 O -0.308 6.308 26 C -0.064 4.064 27 C -0.111 4.111 28 C -0.054 4.054 29 H 0.120 0.880 30 H 0.126 0.874 31 H 0.095 0.905 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.127 0.873 35 H 0.112 0.888 36 H 0.106 0.894 37 H 0.089 0.911 38 H 0.031 0.969 39 H 0.043 0.957 40 H 0.072 0.928 41 H 0.107 0.893 42 H 0.079 0.921 43 H 0.148 0.852 44 H 0.077 0.923 45 H 0.077 0.923 46 H 0.105 0.895 47 H 0.060 0.940 48 H 0.060 0.940 49 H 0.101 0.899 50 H 0.099 0.901 51 H 0.076 0.924 52 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 14.163 21.545 1.298 25.816 hybrid contribution -0.598 -0.487 1.318 1.527 sum 13.566 21.058 2.616 25.185 Atomic orbital electron populations 1.23956 0.95259 1.02712 0.98292 1.21825 0.95482 0.95306 1.02285 1.20823 1.01315 0.93895 1.01192 1.20858 1.01338 0.95858 0.79670 1.46201 1.18133 1.37534 1.13801 1.25532 0.98766 0.94160 0.86479 1.20469 0.86825 0.97617 1.02353 1.19067 0.97464 0.89042 0.95040 1.21095 0.92483 1.04819 1.37867 0.92340 1.25007 0.96258 0.97108 0.95837 1.69955 1.24858 1.16793 1.41455 0.86625 0.83690 0.78638 0.78871 1.20081 1.21292 1.20188 1.74006 1.02644 1.17478 1.19646 1.74500 1.15287 1.10679 1.16084 1.22278 0.90971 0.98994 0.90344 1.59102 1.10425 1.29582 1.17949 1.21140 0.91617 0.95204 0.96396 1.22014 0.96720 0.95687 1.00307 1.20763 0.96836 0.97446 0.98238 1.21297 0.93573 0.95335 0.87529 1.87849 1.45528 1.52262 1.45170 1.22741 0.87755 0.96967 0.98959 1.20444 0.97266 0.98369 0.95031 1.22072 0.95997 0.96386 0.90931 0.88026 0.87411 0.90515 0.92193 0.91904 0.87258 0.88799 0.89365 0.91109 0.96853 0.95695 0.92792 0.89321 0.92079 0.85159 0.92339 0.92294 0.89504 0.94035 0.94015 0.89918 0.90096 0.92448 0.89265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.00 13.91 29.01 0.40 -1.59 16 2 C -0.15 -1.86 5.64 -101.06 -0.57 -2.43 16 3 C -0.12 -1.25 10.05 36.01 0.36 -0.88 16 4 C 0.15 2.08 6.09 -5.19 -0.03 2.04 16 5 N -0.46 -7.99 2.79 -115.37 -0.32 -8.31 16 6 C 0.22 4.40 7.32 -154.02 -1.13 3.27 16 7 C -0.03 -0.67 5.26 -27.88 -0.15 -0.82 16 8 C 0.03 0.81 4.95 -27.89 -0.14 0.67 16 9 C -0.52 -14.18 9.11 -34.44 -0.31 -14.49 16 10 H 0.06 1.50 7.74 -52.48 -0.41 1.10 16 11 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 12 N -0.89 -26.33 13.29 55.43 0.74 -25.60 16 13 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 14 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 15 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 16 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 17 N -0.30 -6.56 12.18 32.99 0.40 -6.15 16 18 N -0.32 -6.43 11.44 30.32 0.35 -6.08 16 19 C 0.33 5.61 6.85 -318.87 -2.19 3.43 16 20 N -0.45 -5.90 4.01 -175.90 -0.71 -6.60 16 21 C 0.08 1.03 5.56 -5.28 -0.03 1.00 16 22 C -0.13 -1.37 9.33 -35.96 -0.34 -1.71 16 23 C -0.13 -1.23 5.89 -100.93 -0.59 -1.83 16 24 C 0.10 0.77 6.28 36.00 0.23 0.99 16 25 O -0.39 -3.53 8.88 -35.23 -0.31 -3.84 16 26 C 0.03 0.19 11.01 101.05 1.11 1.30 16 27 C -0.07 -0.63 6.05 -28.01 -0.17 -0.79 16 28 C 0.07 0.85 5.03 -3.57 -0.02 0.83 16 29 H 0.10 1.06 8.05 -52.49 -0.42 0.64 16 30 H 0.11 1.39 6.98 -52.49 -0.37 1.02 16 31 H 0.08 0.86 7.27 -51.93 -0.38 0.49 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.11 1.67 7.55 -51.93 -0.39 1.28 16 35 H 0.09 1.19 6.47 -51.93 -0.34 0.85 16 36 H 0.09 1.81 8.14 -51.92 -0.42 1.39 16 37 H 0.07 1.31 7.01 -51.93 -0.36 0.95 16 38 H 0.01 0.35 8.08 -51.93 -0.42 -0.07 16 39 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 41 H 0.09 1.08 6.51 -51.93 -0.34 0.74 16 42 H 0.06 0.85 8.10 -51.93 -0.42 0.42 16 43 H 0.13 1.40 6.54 -52.49 -0.34 1.06 16 44 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 45 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.09 0.43 8.14 -51.92 -0.42 0.01 16 47 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 48 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 49 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 50 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 51 H 0.06 0.72 8.08 -51.93 -0.42 0.30 16 52 H 0.09 1.09 7.98 -51.93 -0.41 0.68 16 LS Contribution 421.47 15.07 6.35 6.35 Total: -1.00 -32.56 421.47 -10.98 -43.54 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -8.81 Total: 0.07 kcal Atomic # 6 Polarization: -5.78 SS G_CDS: -3.65 Total: -9.43 kcal Atomic # 7 Polarization: -53.20 SS G_CDS: 0.46 Total: -52.74 kcal Atomic # 8 Polarization: -3.53 SS G_CDS: -0.31 Total: -3.84 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 6.35 Total: 6.35 kcal Total: -32.56 -10.98 -43.54 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001524088110.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.342 kcal (2) G-P(sol) polarization free energy of solvation -32.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds