Wall clock time and date at job start Wed Apr 1 2020 05:10:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50703 * 120.00098 * 2 1 4 4 C 1.50702 * 120.00140 * 180.02562 * 2 1 3 5 5 N 1.46499 * 109.47244 * 94.91724 * 4 2 1 6 6 C 1.36738 * 127.13828 * 265.48679 * 5 4 2 7 7 C 1.50702 * 126.34539 * 0.02562 * 6 5 4 8 8 C 1.52995 * 109.47546 * 274.35703 * 7 6 5 9 9 C 1.50696 * 109.47387 * 175.12880 * 8 7 6 10 10 H 1.08006 * 119.99757 * 0.02562 * 9 8 7 11 11 C 1.37876 * 119.99800 * 180.02562 * 9 8 7 12 12 N 1.31507 * 120.00479 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 119.99744 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47109 * 59.99734 * 13 11 9 15 15 H 1.48497 * 109.47345 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.46942 * 300.00395 * 13 11 9 17 17 N 1.30295 * 107.30589 * 179.75484 * 6 5 4 18 18 N 1.28530 * 110.05621 * 0.23938 * 17 6 5 19 19 C 1.31218 * 109.85729 * 0.02562 * 18 17 6 20 20 N 1.38579 * 126.47440 * 180.02562 * 19 18 17 21 21 C 1.46842 * 111.00195 * 255.79197 * 20 19 18 22 22 C 1.50146 * 110.27682 * 174.30986 * 21 20 19 23 23 C 1.29822 * 123.28351 * 342.97735 * 22 21 20 24 24 C 1.50695 * 118.55086 * 180.34990 * 23 22 21 25 25 O 1.42900 * 109.47292 * 359.97438 * 24 23 22 26 26 C 1.42900 * 113.99849 * 180.02562 * 25 24 23 27 27 C 1.50308 * 122.89357 * 0.36779 * 23 22 21 28 28 C 1.47249 * 110.99773 * 18.72358 * 20 19 18 29 29 H 1.08002 * 119.99991 * 5.19697 * 1 2 3 30 30 H 1.07995 * 119.99615 * 185.20394 * 1 2 3 31 31 H 1.08997 * 109.47130 * 184.76098 * 3 2 1 32 32 H 1.08997 * 109.47576 * 304.77117 * 3 2 1 33 33 H 1.09004 * 109.46553 * 64.76571 * 3 2 1 34 34 H 1.08998 * 109.46702 * 334.92088 * 4 2 1 35 35 H 1.08992 * 109.47475 * 214.91721 * 4 2 1 36 36 H 1.09010 * 109.46520 * 154.35730 * 7 6 5 37 37 H 1.08999 * 109.47188 * 34.36446 * 7 6 5 38 38 H 1.09000 * 109.46470 * 55.13249 * 8 7 6 39 39 H 1.09000 * 109.47097 * 295.13501 * 8 7 6 40 40 H 0.97001 * 120.00310 * 180.02562 * 12 11 9 41 41 H 1.09003 * 109.33303 * 294.56233 * 21 20 19 42 42 H 1.09001 * 109.33170 * 54.22474 * 21 20 19 43 43 H 1.07996 * 118.35341 * 162.94714 * 22 21 20 44 44 H 1.09005 * 109.47558 * 119.99902 * 24 23 22 45 45 H 1.09003 * 109.47050 * 239.99269 * 24 23 22 46 46 H 1.09008 * 109.46885 * 180.02562 * 26 25 24 47 47 H 1.09004 * 109.47246 * 299.99619 * 26 25 24 48 48 H 1.08990 * 109.47350 * 60.00306 * 26 25 24 49 49 H 1.08993 * 109.42941 * 103.55810 * 27 23 22 50 50 H 1.09002 * 109.42765 * 223.46094 * 27 23 22 51 51 H 1.08999 * 109.63365 * 287.49873 * 28 20 19 52 52 H 1.08994 * 109.63378 * 48.11423 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 -0.0006 5 7 2.4103 -1.6682 -1.3769 6 6 1.7064 -2.4854 -2.2173 7 6 0.4127 -3.1908 -1.9011 8 6 0.7133 -4.5210 -1.2077 9 6 -0.5791 -5.1703 -0.7845 10 1 -1.5209 -4.6830 -0.9900 11 6 -0.5594 -6.3863 -0.1350 12 7 0.5873 -6.9794 0.1157 13 14 -2.1615 -7.1915 0.3889 14 1 -3.0063 -7.4373 -0.8074 15 1 -1.8697 -8.4825 1.0621 16 1 -2.8822 -6.2947 1.3279 17 7 2.3584 -2.5366 -3.3442 18 7 3.4208 -1.8169 -3.2718 19 6 3.5045 -1.2638 -2.0848 20 7 4.5105 -0.4224 -1.6371 21 6 5.4213 -1.1287 -0.7273 22 6 6.5796 -0.2460 -0.3618 23 6 6.9018 0.8196 -1.0297 24 6 8.0912 1.6240 -0.5724 25 8 8.6648 1.0109 0.5840 26 6 9.8054 1.6990 1.1012 27 6 6.1405 1.2865 -2.2386 28 6 5.2622 0.1490 -2.7669 29 1 -0.5400 0.9315 -0.0847 30 1 -0.5399 -0.9314 0.0848 31 1 3.1321 1.1077 -0.0853 32 1 1.7377 1.9129 -0.8441 33 1 1.8657 1.8388 0.9297 34 1 1.4391 -2.0853 0.4347 35 1 2.9749 -1.1987 0.5876 36 1 -0.1342 -3.3782 -2.8253 37 1 -0.1904 -2.5658 -1.2425 38 1 1.3339 -4.3409 -0.3299 39 1 1.2417 -5.1791 -1.8975 40 1 0.6012 -7.8351 0.5723 41 1 4.8818 -1.4094 0.1773 42 1 5.7959 -2.0273 -1.2175 43 1 7.1741 -0.5106 0.5001 44 1 8.8332 1.6611 -1.3701 45 1 7.7720 2.6366 -0.3259 46 1 10.1820 1.1708 1.9772 47 1 10.5832 1.7377 0.3385 48 1 9.5214 2.7130 1.3823 49 1 5.5115 2.1339 -1.9660 50 1 6.8432 1.5911 -3.0143 51 1 5.8898 -0.6208 -3.2160 52 1 4.5666 0.5385 -3.5102 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001524088110.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:02 Heat of formation + Delta-G solvation = 53.848744 kcal Electronic energy + Delta-G solvation = -31145.681535 eV Core-core repulsion = 27146.888474 eV Total energy + Delta-G solvation = -3998.793061 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -44.06808 -40.45681 -38.72573 -37.88705 -36.16001 -35.21063 -34.44700 -33.39828 -32.00613 -30.50265 -28.87527 -28.33497 -27.85604 -27.08834 -26.67881 -24.93524 -24.13466 -23.59774 -22.16744 -21.58382 -19.80047 -18.84394 -18.58669 -18.26220 -17.65139 -17.33988 -16.92162 -16.83942 -16.49587 -16.39803 -16.01323 -15.72400 -15.36140 -15.23598 -15.02516 -14.89021 -14.43618 -14.26831 -14.04415 -13.89210 -13.85651 -13.38376 -13.33130 -13.08678 -12.92834 -12.84801 -12.80845 -12.65731 -12.54396 -12.46763 -12.36266 -12.06741 -11.94624 -11.80007 -11.65854 -11.57155 -11.33494 -11.05426 -10.74770 -10.57558 -10.55188 -10.17031 -9.77520 -9.41311 -8.20671 -6.33188 0.67121 0.82014 1.18678 1.42999 1.46206 1.53666 1.58823 1.74560 2.41664 2.62414 2.80571 3.13533 3.43407 3.56170 3.57008 3.68674 3.81375 3.98492 4.00380 4.09814 4.15447 4.26225 4.33412 4.36587 4.41874 4.48411 4.48960 4.56864 4.59663 4.60159 4.65922 4.69734 4.75239 4.82380 4.85146 4.86173 4.88510 4.93398 5.00754 5.01698 5.09016 5.16589 5.34393 5.42262 5.54490 5.57539 5.61153 5.64978 5.77179 5.81554 5.84604 6.13483 6.18044 6.32432 6.82112 7.36916 7.70028 8.91176 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013957 B = 0.002513 C = 0.002445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.646503 B =11138.776973 C =11448.463716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.156 4.156 3 C -0.107 4.107 4 C 0.140 3.860 5 N -0.460 5.460 6 C 0.203 3.797 7 C -0.016 4.016 8 C 0.044 3.956 9 C -0.538 4.538 10 H 0.073 0.927 11 C 0.002 3.998 12 N -0.934 5.934 13 Si 0.967 3.033 14 H -0.268 1.268 15 H -0.288 1.288 16 H -0.260 1.260 17 N -0.332 5.332 18 N -0.352 5.352 19 C 0.349 3.651 20 N -0.434 5.434 21 C 0.088 3.912 22 C -0.148 4.148 23 C -0.118 4.118 24 C 0.097 3.903 25 O -0.416 6.416 26 C 0.027 3.973 27 C -0.066 4.066 28 C 0.070 3.930 29 H 0.124 0.876 30 H 0.097 0.903 31 H 0.070 0.930 32 H 0.061 0.939 33 H 0.081 0.919 34 H 0.095 0.905 35 H 0.109 0.891 36 H 0.088 0.912 37 H 0.093 0.907 38 H -0.006 1.006 39 H -0.018 1.018 40 H 0.263 0.737 41 H 0.087 0.913 42 H 0.039 0.961 43 H 0.129 0.871 44 H 0.075 0.925 45 H 0.077 0.923 46 H 0.090 0.910 47 H 0.051 0.949 48 H 0.053 0.947 49 H 0.098 0.902 50 H 0.109 0.891 51 H 0.044 0.956 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.819 24.731 3.183 28.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.157 4.157 3 C -0.164 4.164 4 C 0.019 3.981 5 N -0.152 5.152 6 C -0.066 4.066 7 C -0.055 4.055 8 C 0.006 3.994 9 C -0.576 4.576 10 H 0.091 0.909 11 C -0.196 4.196 12 N -0.574 5.574 13 Si 0.791 3.209 14 H -0.192 1.192 15 H -0.214 1.214 16 H -0.185 1.185 17 N -0.170 5.170 18 N -0.196 5.196 19 C -0.009 4.009 20 N -0.159 5.159 21 C -0.038 4.038 22 C -0.167 4.167 23 C -0.118 4.118 24 C 0.022 3.978 25 O -0.335 6.335 26 C -0.069 4.069 27 C -0.103 4.103 28 C -0.057 4.057 29 H 0.142 0.858 30 H 0.115 0.885 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.100 0.900 34 H 0.113 0.887 35 H 0.127 0.873 36 H 0.106 0.894 37 H 0.111 0.889 38 H 0.012 0.988 39 H 0.001 0.999 40 H 0.072 0.928 41 H 0.105 0.895 42 H 0.057 0.943 43 H 0.147 0.853 44 H 0.093 0.907 45 H 0.095 0.905 46 H 0.109 0.891 47 H 0.070 0.930 48 H 0.072 0.928 49 H 0.116 0.884 50 H 0.127 0.873 51 H 0.062 0.938 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 13.996 24.457 2.198 28.264 hybrid contribution -0.427 -1.319 1.045 1.737 sum 13.569 23.138 3.243 27.018 Atomic orbital electron populations 1.24097 0.95172 1.03296 0.97285 1.21864 0.95694 0.95025 1.03111 1.20779 1.00550 0.92821 1.02253 1.21063 1.02212 0.96666 0.78153 1.46330 1.17689 1.36753 1.14460 1.25286 0.98999 0.95332 0.87011 1.20166 0.87561 0.95637 1.02173 1.18826 0.96323 0.90691 0.93551 1.21533 0.93431 1.05172 1.37420 0.90917 1.25985 0.99936 0.97872 0.95851 1.70111 1.27486 1.17294 1.42532 0.85469 0.79094 0.77515 0.78802 1.19249 1.21356 1.18481 1.73900 1.03606 1.18511 1.21028 1.74415 1.15238 1.11938 1.18020 1.22685 0.91205 0.97555 0.89414 1.59336 1.10109 1.28065 1.18401 1.21079 0.92080 0.94985 0.95686 1.21806 0.96686 0.96686 1.01485 1.21052 0.96769 0.96571 0.97410 1.21393 0.93122 0.95488 0.87837 1.87814 1.46641 1.53390 1.45697 1.22895 0.87153 0.97418 0.99398 1.20472 0.97288 0.97108 0.95396 1.22202 0.95961 0.97051 0.90516 0.85787 0.88491 0.91074 0.92010 0.89996 0.88656 0.87325 0.89384 0.88878 0.98780 0.99923 0.92793 0.89509 0.94329 0.85321 0.90684 0.90462 0.89105 0.93034 0.92847 0.88391 0.87288 0.93776 0.89862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.63 13.91 67.78 0.94 -2.69 16 2 C -0.16 -3.71 5.64 -16.49 -0.09 -3.80 16 3 C -0.11 -2.06 10.05 71.24 0.72 -1.34 16 4 C 0.14 4.02 6.09 85.63 0.52 4.54 16 5 N -0.46 -16.19 2.79 -518.92 -1.45 -17.64 16 6 C 0.20 8.47 7.32 137.64 1.01 9.48 16 7 C -0.02 -0.66 5.26 29.85 0.16 -0.51 16 8 C 0.04 2.34 4.95 29.85 0.15 2.49 16 9 C -0.54 -29.47 9.11 25.60 0.23 -29.24 16 10 H 0.07 3.70 7.74 -2.91 -0.02 3.68 16 11 C 0.00 0.09 5.46 84.66 0.46 0.55 16 12 N -0.93 -56.73 13.29 21.45 0.28 -56.45 16 13 Si 0.97 43.24 29.54 68.60 2.03 45.27 16 14 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 15 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 16 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 17 N -0.33 -15.14 12.18 -49.54 -0.60 -15.75 16 18 N -0.35 -14.59 11.44 -58.00 -0.66 -15.25 16 19 C 0.35 12.07 6.85 260.11 1.78 13.85 16 20 N -0.43 -11.37 4.01 -710.41 -2.85 -14.22 16 21 C 0.09 2.21 5.56 85.39 0.47 2.69 16 22 C -0.15 -3.03 9.33 26.69 0.25 -2.78 16 23 C -0.12 -1.92 5.89 -15.40 -0.09 -2.01 16 24 C 0.10 1.21 6.28 71.23 0.45 1.66 16 25 O -0.42 -6.71 8.88 -148.98 -1.32 -8.04 16 26 C 0.03 0.26 11.01 113.37 1.25 1.51 16 27 C -0.07 -0.93 6.05 29.76 0.18 -0.75 16 28 C 0.07 1.56 5.03 86.27 0.43 1.99 16 29 H 0.12 2.25 8.05 -2.91 -0.02 2.22 16 30 H 0.10 2.40 6.98 -2.91 -0.02 2.38 16 31 H 0.07 1.44 7.27 -2.39 -0.02 1.43 16 32 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 34 H 0.10 3.00 7.55 -2.39 -0.02 2.98 16 35 H 0.11 2.74 6.47 -2.39 -0.02 2.73 16 36 H 0.09 3.70 8.14 -2.38 -0.02 3.68 16 37 H 0.09 3.47 7.01 -2.39 -0.02 3.45 16 38 H -0.01 -0.34 8.08 -2.39 -0.02 -0.36 16 39 H -0.02 -1.07 8.14 -2.39 -0.02 -1.09 16 40 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 41 H 0.09 2.15 6.51 -2.39 -0.02 2.14 16 42 H 0.04 1.13 8.10 -2.39 -0.02 1.11 16 43 H 0.13 2.71 6.54 -2.91 -0.02 2.70 16 44 H 0.08 0.72 8.14 -2.38 -0.02 0.70 16 45 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 46 H 0.09 0.77 8.14 -2.38 -0.02 0.75 16 47 H 0.05 0.38 8.14 -2.38 -0.02 0.36 16 48 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 49 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 50 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 51 H 0.04 1.11 8.08 -2.39 -0.02 1.09 16 52 H 0.08 1.98 7.98 -2.39 -0.02 1.97 16 Total: -1.00 -72.85 421.47 5.13 -67.71 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: 0.89 Total: 18.73 kcal Atomic # 6 Polarization: -13.19 SS G_CDS: 8.82 Total: -4.37 kcal Atomic # 7 Polarization: -114.02 SS G_CDS: -5.28 Total: -119.30 kcal Atomic # 8 Polarization: -6.71 SS G_CDS: -1.32 Total: -8.04 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Total: -72.85 5.13 -67.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001524088110.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.563 kcal (2) G-P(sol) polarization free energy of solvation -72.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds