Wall clock time and date at job start Wed Apr 1 2020 05:14:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50697 * 120.00528 * 2 1 4 4 C 1.50709 * 119.99544 * 180.02562 * 2 1 3 5 5 N 1.46497 * 109.47196 * 94.99944 * 4 2 1 6 6 C 1.36733 * 127.13556 * 266.95794 * 5 4 2 7 7 C 1.50704 * 126.35079 * 0.03531 * 6 5 4 8 8 C 1.52999 * 109.47097 * 270.25349 * 7 6 5 9 9 C 1.50698 * 109.46633 * 179.97438 * 8 7 6 10 10 H 1.07998 * 120.00552 * 0.02562 * 9 8 7 11 11 C 1.37881 * 119.99646 * 180.02562 * 9 8 7 12 12 N 1.31516 * 120.00050 * 179.97438 * 11 9 8 13 13 Si 1.86796 * 120.00125 * 359.97438 * 11 9 8 14 14 H 1.48494 * 109.47163 * 90.00184 * 13 11 9 15 15 H 1.48498 * 109.47364 * 210.00275 * 13 11 9 16 16 H 1.48508 * 109.47171 * 330.00275 * 13 11 9 17 17 N 1.30296 * 107.30592 * 180.22902 * 6 5 4 18 18 N 1.28529 * 110.05314 * 359.77414 * 17 6 5 19 19 C 1.31218 * 109.85798 * 359.97438 * 18 17 6 20 20 N 1.38579 * 126.47275 * 179.97438 * 19 18 17 21 21 C 1.46001 * 111.00302 * 251.15117 * 20 19 18 22 22 C 1.53557 * 107.83991 * 186.82837 * 21 20 19 23 23 C 1.51115 * 107.12844 * 291.71561 * 22 21 20 24 24 C 1.49642 * 113.77928 * 52.38585 * 23 22 21 25 25 H 1.09001 * 106.74594 * 212.49469 * 24 23 22 26 26 C 1.54047 * 113.03226 * 96.12897 * 24 23 22 27 27 O 1.45083 * 102.97548 * 199.28196 * 26 24 23 28 28 C 1.44544 * 104.71672 * 43.33287 * 27 26 24 29 29 C 1.45190 * 111.00256 * 20.79051 * 20 19 18 30 30 H 1.09005 * 109.50386 * 324.97721 * 29 20 19 31 31 H 1.08010 * 119.99540 * 359.97438 * 1 2 3 32 32 H 1.07994 * 120.00442 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47488 * 270.00190 * 3 2 1 34 34 H 1.09002 * 109.47059 * 30.00242 * 3 2 1 35 35 H 1.09005 * 109.47309 * 149.99929 * 3 2 1 36 36 H 1.08997 * 109.46906 * 334.99885 * 4 2 1 37 37 H 1.09000 * 109.46951 * 215.00118 * 4 2 1 38 38 H 1.09004 * 109.46678 * 30.25822 * 7 6 5 39 39 H 1.08997 * 109.47125 * 150.25101 * 7 6 5 40 40 H 1.08998 * 109.46932 * 299.99507 * 8 7 6 41 41 H 1.08997 * 109.47335 * 59.99881 * 8 7 6 42 42 H 0.97003 * 120.00116 * 179.97438 * 12 11 9 43 43 H 1.09003 * 109.77910 * 306.41181 * 21 20 19 44 44 H 1.08993 * 109.78429 * 67.23788 * 21 20 19 45 45 H 1.08994 * 109.90373 * 50.89002 * 22 21 20 46 46 H 1.08998 * 109.90158 * 172.03311 * 22 21 20 47 47 H 1.09007 * 108.47589 * 291.15270 * 23 22 21 48 48 H 1.09003 * 108.20755 * 173.42833 * 23 22 21 49 49 H 1.08994 * 110.71055 * 317.65054 * 26 24 23 50 50 H 1.08993 * 110.71176 * 80.91313 * 26 24 23 51 51 H 1.08999 * 110.32571 * 79.32548 * 28 27 26 52 52 H 1.08996 * 110.32617 * 201.43000 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 2.0634 -1.3052 -0.0006 5 7 2.4118 -1.6674 -1.3767 6 6 1.6948 -2.4616 -2.2280 7 6 0.3819 -3.1374 -1.9265 8 6 0.6458 -4.5228 -1.3334 9 6 -0.6671 -5.1982 -1.0314 10 1 -1.5967 -4.6903 -1.2418 11 6 -0.6814 -6.4647 -0.4864 12 7 -1.8271 -7.0540 -0.2224 13 14 0.9264 -7.3435 -0.1232 14 1 1.3643 -7.0232 1.2591 15 1 0.7294 -8.8097 -0.2528 16 1 1.9637 -6.8963 -1.0873 17 7 2.3590 -2.5293 -3.3468 18 7 3.4363 -1.8334 -3.2626 19 6 3.5175 -1.2794 -2.0759 20 7 4.5368 -0.4604 -1.6170 21 6 5.3493 -1.1467 -0.6167 22 6 6.3403 -0.1276 -0.0358 23 6 7.3175 0.2193 -1.1350 24 6 6.6634 0.6471 -2.4111 25 1 7.3104 0.3140 -3.2227 26 6 6.5547 2.1775 -2.5493 27 8 5.5211 2.3413 -3.5541 28 6 4.4987 1.3873 -3.1881 29 6 5.2751 0.1212 -2.7237 30 1 5.3297 -0.5967 -3.5421 31 1 -0.5400 0.9354 0.0004 32 1 -0.5400 -0.9352 -0.0004 33 1 2.2453 1.6197 -1.0276 34 1 1.4746 2.0647 0.5139 35 1 3.0160 1.1746 0.5139 36 1 1.4384 -2.0857 0.4334 37 1 2.9741 -1.1993 0.5889 38 1 -0.1799 -2.5368 -1.2110 39 1 -0.1938 -3.2395 -2.8463 40 1 1.2076 -5.1233 -2.0490 41 1 1.2215 -4.4207 -0.4136 42 1 -1.8373 -7.9451 0.1607 43 1 4.7093 -1.5326 0.1767 44 1 5.8946 -1.9667 -1.0838 45 1 5.8077 0.7695 0.2799 46 1 6.8679 -0.5647 0.8118 47 1 7.9380 -0.6545 -1.3341 48 1 7.9568 1.0276 -0.7798 49 1 6.2497 2.6290 -1.6053 50 1 7.4979 2.6013 -2.8938 51 1 3.8902 1.7786 -2.3729 52 1 3.8723 1.1547 -4.0492 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001524089355.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:55 Heat of formation + Delta-G solvation = 59.951983 kcal Electronic energy + Delta-G solvation = -32502.046682 eV Core-core repulsion = 28503.518277 eV Total energy + Delta-G solvation = -3998.528405 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.82714 -40.68811 -37.48178 -36.86460 -34.81301 -34.05512 -33.20689 -31.81022 -31.54571 -29.09626 -28.15853 -27.61905 -27.01692 -25.68712 -25.03013 -23.50696 -22.90811 -21.52288 -21.18728 -20.20748 -18.93947 -18.78192 -17.69650 -16.93622 -16.46830 -16.34465 -16.15150 -15.54220 -15.44059 -15.19389 -14.84356 -14.54540 -14.38029 -14.24280 -14.08516 -13.70682 -13.45371 -13.36081 -13.20434 -12.76386 -12.68374 -12.36197 -12.20152 -12.03022 -11.84068 -11.72491 -11.48710 -11.43617 -11.33087 -11.12700 -11.10654 -10.94302 -10.76664 -10.46019 -10.36103 -10.13876 -10.02109 -9.90929 -9.80951 -9.34620 -9.32718 -9.26706 -8.62839 -8.09591 -6.13332 -4.12898 1.75523 2.00783 2.57455 3.13895 3.23143 3.33082 3.38322 3.51829 3.73892 4.02161 4.22814 4.37591 4.46047 4.49454 4.54534 4.57081 4.63040 4.81944 4.85041 5.00808 5.03265 5.05765 5.15709 5.18298 5.20526 5.27361 5.28984 5.39222 5.41165 5.44017 5.52166 5.53723 5.57542 5.62163 5.68384 5.69292 5.75621 5.82851 5.86740 5.95335 6.13770 6.17205 6.25821 6.36243 6.42517 6.46226 6.63983 6.72634 6.82858 7.07273 7.23966 7.32915 7.65592 8.40786 8.89958 9.07356 9.48352 10.99534 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014788 B = 0.003223 C = 0.003049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.018894 B = 8685.413688 C = 9182.533587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.154 4.154 3 C -0.107 4.107 4 C 0.144 3.856 5 N -0.467 5.467 6 C 0.211 3.789 7 C -0.023 4.023 8 C -0.003 4.003 9 C -0.523 4.523 10 H 0.076 0.924 11 C 0.072 3.928 12 N -0.898 5.898 13 Si 0.875 3.125 14 H -0.278 1.278 15 H -0.285 1.285 16 H -0.265 1.265 17 N -0.293 5.293 18 N -0.323 5.323 19 C 0.339 3.661 20 N -0.456 5.456 21 C 0.062 3.938 22 C -0.114 4.114 23 C -0.108 4.108 24 C -0.117 4.117 25 H 0.078 0.922 26 C 0.054 3.946 27 O -0.375 6.375 28 C 0.055 3.945 29 C 0.081 3.919 30 H 0.089 0.911 31 H 0.103 0.897 32 H 0.109 0.891 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.064 0.936 36 H 0.108 0.892 37 H 0.096 0.904 38 H 0.075 0.925 39 H 0.095 0.905 40 H 0.025 0.975 41 H 0.007 0.993 42 H 0.264 0.736 43 H 0.080 0.920 44 H 0.049 0.951 45 H 0.077 0.923 46 H 0.079 0.921 47 H 0.065 0.935 48 H 0.071 0.929 49 H 0.063 0.937 50 H 0.094 0.906 51 H 0.070 0.930 52 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.098 20.125 3.469 26.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.155 4.155 3 C -0.163 4.163 4 C 0.021 3.979 5 N -0.161 5.161 6 C -0.056 4.056 7 C -0.063 4.063 8 C -0.042 4.042 9 C -0.561 4.561 10 H 0.094 0.906 11 C -0.130 4.130 12 N -0.537 5.537 13 Si 0.702 3.298 14 H -0.204 1.204 15 H -0.211 1.211 16 H -0.190 1.190 17 N -0.131 5.131 18 N -0.167 5.167 19 C -0.017 4.017 20 N -0.181 5.181 21 C -0.064 4.064 22 C -0.152 4.152 23 C -0.145 4.145 24 C -0.136 4.136 25 H 0.097 0.903 26 C -0.023 4.023 27 O -0.293 6.293 28 C -0.023 4.023 29 C -0.027 4.027 30 H 0.107 0.893 31 H 0.122 0.878 32 H 0.127 0.873 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.126 0.874 37 H 0.114 0.886 38 H 0.093 0.907 39 H 0.113 0.887 40 H 0.043 0.957 41 H 0.025 0.975 42 H 0.074 0.926 43 H 0.098 0.902 44 H 0.067 0.933 45 H 0.096 0.904 46 H 0.098 0.902 47 H 0.084 0.916 48 H 0.090 0.910 49 H 0.081 0.919 50 H 0.112 0.888 51 H 0.088 0.912 52 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 17.248 20.100 2.141 26.573 hybrid contribution 0.747 -1.018 1.433 1.911 sum 17.995 19.082 3.574 26.471 Atomic orbital electron populations 1.24027 0.95149 1.02937 0.97469 1.21781 0.95526 0.95163 1.03024 1.20758 0.99741 0.93722 1.02102 1.20943 1.01265 0.95962 0.79703 1.46252 1.17213 1.38900 1.13737 1.25553 0.98663 0.94985 0.86418 1.20256 0.86401 0.96791 1.02828 1.19546 0.98346 0.90987 0.95319 1.21003 0.92019 1.00975 1.42091 0.90567 1.24957 0.95991 0.97142 0.94905 1.69896 1.25037 1.14939 1.43799 0.86850 0.84784 0.79160 0.78997 1.20356 1.21123 1.18981 1.74035 1.01792 1.17556 1.19732 1.74440 1.15196 1.11120 1.15973 1.22124 0.90321 0.98818 0.90459 1.56533 1.12391 1.33064 1.16156 1.22185 0.95060 0.95575 0.93599 1.21396 0.96578 0.99534 0.97695 1.20390 0.98312 1.01966 0.93864 1.21222 0.95701 0.97032 0.99675 0.90315 1.23598 0.92310 0.93950 0.92470 1.89301 1.31342 1.59443 1.49185 1.23845 0.90819 0.86801 1.00820 1.22088 0.91659 0.97299 0.91669 0.89253 0.87827 0.87303 0.91672 0.92079 0.91739 0.87414 0.88628 0.90677 0.88683 0.95650 0.97460 0.92569 0.90171 0.93270 0.90404 0.90239 0.91611 0.91045 0.91866 0.88814 0.91161 0.89025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.73 13.86 29.02 0.40 -1.33 16 2 C -0.15 -1.69 5.64 -101.06 -0.57 -2.26 16 3 C -0.11 -0.98 10.03 36.00 0.36 -0.62 16 4 C 0.14 1.75 5.98 -5.19 -0.03 1.72 16 5 N -0.47 -7.17 2.79 -115.37 -0.32 -7.49 16 6 C 0.21 3.92 7.32 -154.02 -1.13 2.80 16 7 C -0.02 -0.44 5.33 -27.88 -0.15 -0.59 16 8 C 0.00 -0.08 4.02 -27.88 -0.11 -0.19 16 9 C -0.52 -14.18 9.66 -34.44 -0.33 -14.51 16 10 H 0.08 2.19 7.99 -52.49 -0.42 1.77 16 11 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 12 N -0.90 -26.88 13.96 55.43 0.77 -26.11 16 13 Si 0.87 21.36 27.47 -169.99 -4.67 16.69 16 14 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 15 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 16 H -0.27 -6.43 6.54 56.52 0.37 -6.06 16 17 N -0.29 -6.00 12.18 32.99 0.40 -5.60 16 18 N -0.32 -5.99 10.83 30.31 0.33 -5.66 16 19 C 0.34 5.16 6.67 -318.88 -2.13 3.03 16 20 N -0.46 -5.20 3.90 -167.73 -0.65 -5.86 16 21 C 0.06 0.60 5.38 -4.02 -0.02 0.58 16 22 C -0.11 -0.75 6.22 -27.39 -0.17 -0.92 16 23 C -0.11 -0.68 5.32 -29.34 -0.16 -0.84 16 24 C -0.12 -0.97 2.73 -92.39 -0.25 -1.22 16 25 H 0.08 0.65 8.09 -51.93 -0.42 0.23 16 26 C 0.05 0.43 6.98 37.70 0.26 0.69 16 27 O -0.37 -4.30 11.69 -35.23 -0.41 -4.71 16 28 C 0.05 0.63 7.05 38.55 0.27 0.90 16 29 C 0.08 0.91 2.88 -67.90 -0.20 0.71 16 30 H 0.09 1.22 6.90 -51.93 -0.36 0.86 16 31 H 0.10 0.98 8.04 -52.48 -0.42 0.55 16 32 H 0.11 1.30 6.65 -52.49 -0.35 0.95 16 33 H 0.06 0.67 7.13 -51.93 -0.37 0.30 16 34 H 0.06 0.49 8.06 -51.93 -0.42 0.07 16 35 H 0.06 0.54 8.09 -51.93 -0.42 0.12 16 36 H 0.11 1.39 7.57 -51.93 -0.39 1.00 16 37 H 0.10 0.97 5.91 -51.93 -0.31 0.67 16 38 H 0.07 1.30 6.47 -51.93 -0.34 0.97 16 39 H 0.09 1.86 8.14 -51.93 -0.42 1.44 16 40 H 0.03 0.63 7.20 -51.93 -0.37 0.25 16 41 H 0.01 0.16 7.57 -51.93 -0.39 -0.23 16 42 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 43 H 0.08 0.77 5.91 -51.93 -0.31 0.46 16 44 H 0.05 0.54 8.09 -51.93 -0.42 0.12 16 45 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 46 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 47 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.07 0.34 7.83 -51.93 -0.41 -0.06 16 49 H 0.06 0.45 8.13 -51.93 -0.42 0.03 16 50 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 51 H 0.07 0.79 6.97 -51.93 -0.36 0.43 16 52 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 403.85 15.07 6.09 6.09 Total: -1.00 -32.39 403.85 -11.11 -43.50 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -8.60 Total: -0.74 kcal Atomic # 6 Polarization: -6.07 SS G_CDS: -4.04 Total: -10.11 kcal Atomic # 7 Polarization: -51.24 SS G_CDS: 0.53 Total: -50.71 kcal Atomic # 8 Polarization: -4.30 SS G_CDS: -0.41 Total: -4.71 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.67 Total: 16.69 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -32.39 -11.11 -43.50 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001524089355.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.457 kcal (2) G-P(sol) polarization free energy of solvation -32.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds