Wall clock time and date at job start Wed Apr 1 2020 04:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47087 * 2 1 4 4 C 1.53006 * 109.47148 * 119.99991 * 2 1 3 5 5 H 1.09004 * 109.46901 * 300.00262 * 4 2 1 6 6 C 1.52993 * 109.47133 * 180.02562 * 4 2 1 7 7 N 1.46493 * 109.47346 * 185.00123 * 6 4 2 8 8 C 1.34781 * 120.00398 * 180.02562 * 7 6 4 9 9 O 1.21589 * 120.00004 * 359.97438 * 8 7 6 10 10 C 1.47537 * 119.99769 * 179.97438 * 8 7 6 11 11 C 1.40352 * 120.47252 * 179.97438 * 10 8 7 12 12 C 1.36853 * 118.49485 * 179.97438 * 11 10 8 13 13 C 1.39396 * 119.37991 * 359.97438 * 12 11 10 14 14 N 1.38460 * 119.54046 * 179.97438 * 13 12 11 15 15 C 1.48532 * 110.99840 * 62.60407 * 14 13 12 16 16 C 1.54938 * 103.22815 * 159.71901 * 15 14 13 17 17 C 1.54594 * 102.92024 * 322.58577 * 16 15 14 18 18 C 1.47900 * 110.99969 * 179.97438 * 14 13 12 19 19 N 1.32600 * 120.92112 * 0.02562 * 13 12 11 20 20 C 1.31679 * 121.63539 * 359.72064 * 19 13 12 21 21 N 1.46493 * 109.46887 * 59.99945 * 4 2 1 22 22 C 1.36936 * 120.00314 * 274.99849 * 21 4 2 23 23 H 1.08001 * 120.00159 * 0.02562 * 22 21 4 24 24 C 1.38811 * 119.99842 * 180.02562 * 22 21 4 25 25 N 1.31624 * 119.99540 * 179.72505 * 24 22 21 26 26 Si 1.86800 * 120.00451 * 0.02562 * 24 22 21 27 27 H 1.48501 * 109.46758 * 269.72270 * 26 24 22 28 28 H 1.48499 * 109.47026 * 29.72118 * 26 24 22 29 29 H 1.48496 * 109.47474 * 149.72153 * 26 24 22 30 30 H 1.08995 * 109.47266 * 299.99829 * 1 2 3 31 31 H 1.09000 * 109.47204 * 59.99887 * 1 2 3 32 32 H 1.09003 * 109.47147 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.47266 * 240.00171 * 2 1 3 34 34 H 1.08997 * 109.47066 * 179.97438 * 3 2 1 35 35 H 1.09000 * 109.47191 * 300.00121 * 3 2 1 36 36 H 1.09004 * 109.47044 * 59.99688 * 3 2 1 37 37 H 1.09009 * 109.47018 * 304.99771 * 6 4 2 38 38 H 1.09002 * 109.47579 * 64.99441 * 6 4 2 39 39 H 0.96998 * 119.99959 * 359.97438 * 7 6 4 40 40 H 1.08003 * 120.75222 * 359.94950 * 11 10 8 41 41 H 1.08008 * 120.31354 * 179.97438 * 12 11 10 42 42 H 1.08999 * 110.66640 * 278.15216 * 15 14 13 43 43 H 1.09004 * 110.66833 * 41.28718 * 15 14 13 44 44 H 1.09000 * 110.72799 * 204.22707 * 16 15 14 45 45 H 1.09002 * 110.87436 * 81.01078 * 16 15 14 46 46 H 1.08999 * 110.31298 * 263.03666 * 17 16 15 47 47 H 1.09007 * 110.30911 * 140.86960 * 17 16 15 48 48 H 1.08999 * 109.91951 * 333.51027 * 18 14 13 49 49 H 1.08998 * 109.91556 * 94.80292 * 18 14 13 50 50 H 1.07998 * 119.74130 * 180.26505 * 20 19 13 51 51 H 0.97000 * 120.00040 * 94.99981 * 21 4 2 52 52 H 0.96999 * 119.99889 * 180.27497 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6766 -0.2074 2.1393 6 6 3.5699 -0.7207 1.2496 7 7 4.0584 -1.5129 2.3809 8 6 5.3835 -1.6533 2.5833 9 8 6.1736 -1.1228 1.8265 10 6 5.8752 -2.4507 3.7230 11 6 7.2529 -2.6039 3.9428 12 6 7.6643 -3.3517 5.0126 13 6 6.7113 -3.9344 5.8465 14 7 7.1238 -4.6921 6.9295 15 6 7.8920 -3.8658 7.8955 16 6 7.8030 -4.6819 9.2095 17 6 6.3652 -5.2484 9.1679 18 6 5.9636 -5.2169 7.6819 19 7 5.4153 -3.7740 5.6165 20 6 4.9773 -3.0585 4.6016 21 7 1.5517 -2.1024 1.2492 22 6 0.3101 -2.3897 1.7504 23 1 -0.3093 -1.5980 2.1454 24 6 -0.1523 -3.6986 1.7508 25 7 -1.3435 -3.9754 2.2375 26 14 0.9192 -5.0681 1.0684 27 1 0.6410 -5.2389 -0.3803 28 1 2.3499 -4.7193 1.2599 29 1 0.6186 -6.3346 1.7829 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 3.1300 1.4425 0.0005 35 1 1.6766 1.9564 -0.8900 36 1 1.6766 1.9564 0.8900 37 1 3.9336 -1.1548 0.3182 38 1 3.9330 0.3032 1.3393 39 1 3.4281 -1.9358 2.9849 40 1 7.9722 -2.1425 3.2823 41 1 8.7174 -3.4892 5.2089 42 1 8.9290 -3.7642 7.5753 43 1 7.4285 -2.8870 8.0185 44 1 7.9374 -4.0342 10.0758 45 1 8.5355 -5.4891 9.2158 46 1 5.6941 -4.6209 9.7543 47 1 6.3509 -6.2721 9.5423 48 1 5.1039 -4.5613 7.5434 49 1 5.7246 -6.2241 7.3407 50 1 3.9148 -2.9445 4.4454 51 1 2.1078 -2.8135 0.8942 52 1 -1.6651 -4.8906 2.2415 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568466214.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:20 Heat of formation + Delta-G solvation = 2.480980 kcal Electronic energy + Delta-G solvation = -30641.006024 eV Core-core repulsion = 26639.985489 eV Total energy + Delta-G solvation = -4001.020535 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.08379 -40.75963 -39.23131 -38.67987 -35.45810 -34.95277 -34.03046 -33.61029 -32.71011 -30.90993 -29.95363 -29.25519 -27.57267 -25.78483 -24.95986 -24.66078 -23.32723 -22.45054 -21.60297 -21.58136 -20.96280 -19.78889 -18.98611 -18.34246 -17.92392 -17.07673 -16.96291 -16.45005 -16.25505 -16.06708 -15.88313 -15.60177 -15.37494 -14.98677 -14.77656 -14.72434 -14.60394 -14.28515 -14.19002 -14.03499 -13.73689 -13.47531 -13.30425 -13.12755 -12.99268 -12.92161 -12.84456 -12.52607 -12.29159 -12.25503 -12.14416 -11.98312 -11.78563 -11.49995 -11.48790 -11.35319 -11.31595 -11.11686 -10.96147 -10.86730 -10.52304 -10.12433 -9.31176 -9.27870 -7.96103 -5.27722 -0.48724 0.15742 1.37763 1.39393 1.45595 1.70674 2.12903 2.45616 2.50153 2.74083 3.18835 3.35860 3.54944 3.58709 3.67171 3.72367 3.82417 3.86047 3.96740 3.99014 4.13953 4.25018 4.28509 4.29705 4.43614 4.50221 4.54124 4.61214 4.63677 4.72058 4.77129 4.87153 4.91671 4.95171 4.96128 4.97131 5.02322 5.05998 5.12565 5.17066 5.22592 5.24863 5.28840 5.32231 5.47045 5.53835 5.62914 5.77162 5.87438 5.96154 6.26661 6.44949 6.72784 7.09015 7.12784 7.87208 8.05409 9.24916 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010872 B = 0.002920 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2574.908309 B = 9588.114858 C =11283.574712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.104 4.104 3 C -0.141 4.141 4 C 0.174 3.826 5 H 0.060 0.940 6 C 0.119 3.881 7 N -0.712 5.712 8 C 0.565 3.435 9 O -0.575 6.575 10 C -0.225 4.225 11 C 0.002 3.998 12 C -0.179 4.179 13 C 0.316 3.684 14 N -0.468 5.468 15 C 0.040 3.960 16 C -0.116 4.116 17 C -0.130 4.130 18 C 0.028 3.972 19 N -0.540 5.540 20 C 0.160 3.840 21 N -0.747 5.747 22 C -0.201 4.201 23 H 0.071 0.929 24 C -0.055 4.055 25 N -0.980 5.980 26 Si 0.935 3.065 27 H -0.289 1.289 28 H -0.257 1.257 29 H -0.305 1.305 30 H 0.039 0.961 31 H 0.051 0.949 32 H 0.047 0.953 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.056 0.944 37 H 0.062 0.938 38 H 0.090 0.910 39 H 0.408 0.592 40 H 0.159 0.841 41 H 0.172 0.828 42 H 0.111 0.889 43 H 0.052 0.948 44 H 0.096 0.904 45 H 0.087 0.913 46 H 0.074 0.926 47 H 0.084 0.916 48 H 0.066 0.934 49 H 0.072 0.928 50 H 0.162 0.838 51 H 0.362 0.638 52 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.390 4.005 10.789 24.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.126 4.126 3 C -0.199 4.199 4 C 0.066 3.934 5 H 0.078 0.922 6 C -0.005 4.005 7 N -0.363 5.363 8 C 0.353 3.647 9 O -0.456 6.456 10 C -0.232 4.232 11 C -0.024 4.024 12 C -0.201 4.201 13 C 0.084 3.916 14 N -0.185 5.185 15 C -0.084 4.084 16 C -0.154 4.154 17 C -0.168 4.168 18 C -0.099 4.099 19 N -0.254 5.254 20 C 0.001 3.999 21 N -0.389 5.389 22 C -0.332 4.332 23 H 0.088 0.912 24 C -0.247 4.247 25 N -0.632 5.632 26 Si 0.765 3.235 27 H -0.215 1.215 28 H -0.182 1.182 29 H -0.232 1.232 30 H 0.058 0.942 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.080 0.920 38 H 0.108 0.892 39 H 0.245 0.755 40 H 0.177 0.823 41 H 0.189 0.811 42 H 0.129 0.871 43 H 0.070 0.930 44 H 0.115 0.885 45 H 0.105 0.895 46 H 0.093 0.907 47 H 0.103 0.897 48 H 0.084 0.916 49 H 0.091 0.909 50 H 0.179 0.821 51 H 0.195 0.805 52 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 21.468 3.578 10.768 24.282 hybrid contribution -0.588 -0.695 -0.795 1.208 sum 20.880 2.883 9.973 23.319 Atomic orbital electron populations 1.21722 0.95728 1.01688 1.00027 1.21598 0.95960 0.96605 0.98408 1.21858 1.01165 0.94736 1.02165 1.20697 0.90282 0.85052 0.97365 0.92239 1.21753 0.93980 0.96237 0.88551 1.45969 1.06545 1.52770 1.30974 1.18126 0.82330 0.79947 0.84312 1.90724 1.55991 1.50467 1.48420 1.20815 0.96227 1.06359 0.99783 1.21464 0.94075 0.92134 0.94752 1.21505 1.01857 1.00875 0.95883 1.20533 0.88518 0.88434 0.94163 1.61826 1.20746 1.28825 1.07133 1.23512 0.99345 0.94676 0.90885 1.22539 0.96621 1.00044 0.96226 1.22450 0.97435 1.03013 0.93904 1.22934 0.92426 1.00898 0.93624 1.67665 1.16807 1.19485 1.21489 1.22925 1.00185 0.88931 0.87838 1.42836 1.16971 1.04421 1.74718 1.18932 0.91805 0.92914 1.29545 0.91156 1.25212 0.97511 0.99154 1.02781 1.69837 1.20025 1.19074 1.54247 0.85715 0.79982 0.80041 0.77749 1.21547 1.18168 1.23249 0.94197 0.92993 0.93396 0.92016 0.91757 0.92011 0.92534 0.91981 0.89207 0.75467 0.82346 0.81065 0.87076 0.92974 0.88535 0.89473 0.90699 0.89689 0.91554 0.90928 0.82114 0.80494 0.93747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.67 8.26 71.98 0.59 -4.08 16 2 C -0.10 -3.17 2.69 -10.79 -0.03 -3.20 16 3 C -0.14 -3.33 8.84 71.98 0.64 -2.69 16 4 C 0.17 5.78 2.18 44.99 0.10 5.88 16 5 H 0.06 2.05 8.08 -2.39 -0.02 2.03 16 6 C 0.12 3.51 4.73 86.38 0.41 3.92 16 7 N -0.71 -21.55 5.34 -466.27 -2.49 -24.04 16 8 C 0.57 17.54 7.77 86.70 0.67 18.21 16 9 O -0.57 -20.33 16.41 -4.00 -0.07 -20.39 16 10 C -0.23 -6.18 5.89 -19.99 -0.12 -6.30 16 11 C 0.00 0.04 9.65 22.46 0.22 0.26 16 12 C -0.18 -3.55 9.38 22.22 0.21 -3.34 16 13 C 0.32 7.44 6.20 133.25 0.83 8.27 16 14 N -0.47 -9.21 5.28 -689.52 -3.64 -12.86 16 15 C 0.04 0.52 6.03 86.65 0.52 1.05 16 16 C -0.12 -1.13 7.06 31.80 0.22 -0.91 16 17 C -0.13 -1.71 6.93 31.46 0.22 -1.49 16 18 C 0.03 0.56 6.34 86.44 0.55 1.11 16 19 N -0.54 -15.09 8.11 -192.33 -1.56 -16.65 16 20 C 0.16 4.48 10.71 85.03 0.91 5.39 16 21 N -0.75 -30.89 4.24 -322.95 -1.37 -32.26 16 22 C -0.20 -10.26 8.05 84.03 0.68 -9.58 16 23 H 0.07 3.93 7.62 -2.91 -0.02 3.90 16 24 C -0.06 -3.07 5.50 84.86 0.47 -2.60 16 25 N -0.98 -60.40 13.97 21.65 0.30 -60.10 16 26 Si 0.94 44.71 27.74 68.60 1.90 46.61 16 27 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 28 H -0.26 -11.20 6.51 99.48 0.65 -10.55 16 29 H -0.31 -15.19 7.11 99.48 0.71 -14.48 16 30 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.05 2.06 6.01 -2.39 -0.01 2.04 16 33 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.06 1.37 6.54 -2.39 -0.02 1.35 16 35 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 38 H 0.09 2.39 6.71 -2.39 -0.02 2.38 16 39 H 0.41 12.49 6.19 -92.71 -0.57 11.91 16 40 H 0.16 3.24 7.73 -2.91 -0.02 3.22 16 41 H 0.17 2.26 8.01 -2.91 -0.02 2.24 16 42 H 0.11 1.00 8.11 -2.39 -0.02 0.98 16 43 H 0.05 0.75 7.99 -2.39 -0.02 0.73 16 44 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 45 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 46 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 47 H 0.08 0.96 8.14 -2.38 -0.02 0.94 16 48 H 0.07 1.61 6.48 -2.39 -0.02 1.60 16 49 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 50 H 0.16 4.42 6.41 -2.91 -0.02 4.40 16 51 H 0.36 15.16 5.66 -92.71 -0.52 14.64 16 52 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16 Total: -1.00 -68.06 407.44 -0.07 -68.13 By element: Atomic # 1 Polarization: 41.89 SS G_CDS: -0.23 Total: 41.66 kcal Atomic # 6 Polarization: 2.81 SS G_CDS: 7.08 Total: 9.89 kcal Atomic # 7 Polarization: -137.14 SS G_CDS: -8.76 Total: -145.90 kcal Atomic # 8 Polarization: -20.33 SS G_CDS: -0.07 Total: -20.39 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 1.90 Total: 46.61 kcal Total: -68.06 -0.07 -68.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568466214.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.610 kcal (2) G-P(sol) polarization free energy of solvation -68.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds