Wall clock time and date at job start Wed Apr 1 2020 04:36:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47164 * 2 1 4 4 C 1.52996 * 109.47178 * 120.00289 * 2 1 3 5 5 H 1.09000 * 109.47521 * 299.99961 * 4 2 1 6 6 C 1.53003 * 109.47332 * 60.00127 * 4 2 1 7 7 N 1.46501 * 109.47349 * 175.00381 * 6 4 2 8 8 C 1.34775 * 119.99874 * 180.02562 * 7 6 4 9 9 O 1.21589 * 120.00476 * 359.97438 * 8 7 6 10 10 C 1.47541 * 119.99490 * 179.97438 * 8 7 6 11 11 C 1.40354 * 120.47436 * 179.97438 * 10 8 7 12 12 C 1.36853 * 118.49734 * 179.97438 * 11 10 8 13 13 C 1.39395 * 119.37552 * 359.97438 * 12 11 10 14 14 N 1.38457 * 119.53921 * 179.97438 * 13 12 11 15 15 C 1.48534 * 110.99851 * 62.60513 * 14 13 12 16 16 C 1.54940 * 103.23021 * 159.72235 * 15 14 13 17 17 C 1.54601 * 102.91699 * 322.58879 * 16 15 14 18 18 C 1.47899 * 111.00361 * 180.02562 * 14 13 12 19 19 N 1.32603 * 120.92691 * 0.02562 * 13 12 11 20 20 C 1.31681 * 121.63350 * 359.72365 * 19 13 12 21 21 N 1.46505 * 109.47130 * 179.97438 * 4 2 1 22 22 C 1.36931 * 119.99788 * 84.99932 * 21 4 2 23 23 H 1.08002 * 120.00438 * 0.02562 * 22 21 4 24 24 C 1.38817 * 119.99680 * 179.72358 * 22 21 4 25 25 N 1.31614 * 119.99888 * 0.27479 * 24 22 21 26 26 Si 1.86803 * 119.99862 * 180.27671 * 24 22 21 27 27 H 1.48496 * 109.47141 * 59.99751 * 26 24 22 28 28 H 1.48490 * 109.47071 * 180.02562 * 26 24 22 29 29 H 1.48501 * 109.46993 * 300.00028 * 26 24 22 30 30 H 1.09000 * 109.46863 * 299.99348 * 1 2 3 31 31 H 1.08994 * 109.47323 * 60.00002 * 1 2 3 32 32 H 1.08998 * 109.47238 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47096 * 239.99921 * 2 1 3 34 34 H 1.09003 * 109.47086 * 180.02562 * 3 2 1 35 35 H 1.08994 * 109.46999 * 300.00196 * 3 2 1 36 36 H 1.09000 * 109.46698 * 60.00552 * 3 2 1 37 37 H 1.09009 * 109.46837 * 294.99855 * 6 4 2 38 38 H 1.09000 * 109.47433 * 54.99587 * 6 4 2 39 39 H 0.97000 * 120.00018 * 359.97438 * 7 6 4 40 40 H 1.08006 * 120.75071 * 359.96161 * 11 10 8 41 41 H 1.08000 * 120.31224 * 179.97438 * 12 11 10 42 42 H 1.09002 * 110.66870 * 278.15638 * 15 14 13 43 43 H 1.08999 * 110.66745 * 41.28593 * 15 14 13 44 44 H 1.08990 * 110.72885 * 204.22729 * 16 15 14 45 45 H 1.09004 * 110.87347 * 81.01366 * 16 15 14 46 46 H 1.08995 * 110.30444 * 263.03655 * 17 16 15 47 47 H 1.09004 * 110.30452 * 140.87495 * 17 16 15 48 48 H 1.09002 * 109.91439 * 333.50850 * 18 14 13 49 49 H 1.08999 * 109.91799 * 94.80453 * 18 14 13 50 50 H 1.07997 * 119.74218 * 180.26771 * 20 19 13 51 51 H 0.97000 * 119.99792 * 264.99726 * 21 4 2 52 52 H 0.97005 * 119.99715 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -0.2076 2.1392 6 6 1.5300 -2.1638 1.2491 7 7 2.1141 -2.8884 2.3806 8 6 1.8060 -4.1849 2.5819 9 8 1.0429 -4.7532 1.8249 10 6 2.3947 -4.9146 3.7211 11 6 2.0804 -6.2648 3.9405 12 6 2.6499 -6.9025 5.0091 13 6 3.5189 -6.1988 5.8416 14 7 4.0966 -6.8405 6.9240 15 6 4.9624 -7.9619 6.4779 16 6 5.8932 -8.1967 7.6941 17 6 6.1533 -6.7634 8.2120 18 6 4.9801 -5.9223 7.6748 19 7 3.7993 -4.9233 5.6120 20 6 3.2767 -4.2740 4.5925 21 7 3.5050 -0.7218 1.2488 22 6 4.1901 0.3528 1.7498 23 1 3.6506 1.2005 2.1454 24 6 5.5783 0.3498 1.7547 25 7 6.2359 -0.6835 1.2730 26 14 6.5130 1.8124 2.4451 27 1 6.1495 2.0032 3.8722 28 1 7.9727 1.5639 2.3345 29 1 6.1595 3.0331 1.6768 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9563 -0.8899 36 1 1.6767 1.9562 0.8900 37 1 0.4436 -2.1651 1.3387 38 1 1.8183 -2.6512 0.3177 39 1 2.7232 -2.4351 2.9844 40 1 1.4042 -6.7886 3.2811 41 1 2.4282 -7.9410 5.2056 42 1 4.3656 -8.8508 6.2731 43 1 5.5414 -7.6753 5.6000 44 1 6.8245 -8.6688 7.3817 45 1 5.3943 -8.7971 8.4549 46 1 7.0989 -6.3863 7.8226 47 1 6.1600 -6.7504 9.3019 48 1 5.3552 -5.1429 7.0116 49 1 4.4324 -5.4757 8.5046 50 1 3.5296 -3.2364 4.4317 51 1 3.9897 -1.4834 0.8938 52 1 7.2059 -0.6854 1.2761 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568466215.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:26 Heat of formation + Delta-G solvation = 17.886356 kcal Electronic energy + Delta-G solvation = -30561.436723 eV Core-core repulsion = 26561.084216 eV Total energy + Delta-G solvation = -4000.352507 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.03121 -39.49474 -38.13139 -37.16543 -34.01468 -33.14370 -33.07674 -32.56456 -30.52887 -29.62010 -29.20045 -27.76131 -26.11660 -24.45539 -23.82315 -23.45552 -22.05571 -21.46785 -20.81305 -20.28695 -19.35818 -18.13726 -17.50823 -17.00052 -16.78801 -16.04479 -15.33887 -15.22725 -14.95735 -14.82470 -14.59561 -14.23167 -13.98027 -13.88102 -13.52034 -13.38917 -13.32148 -13.14970 -12.88374 -12.66561 -12.43252 -12.33996 -12.15307 -12.03814 -11.64932 -11.63635 -11.46284 -11.07293 -10.96690 -10.85562 -10.83507 -10.67450 -10.32376 -10.18162 -10.12923 -10.01270 -9.97082 -9.82830 -9.56076 -9.37387 -8.93988 -8.70641 -8.29804 -7.05798 -5.83995 -3.13501 0.63426 1.21353 2.94081 3.38344 3.39669 3.44258 3.45250 3.50427 3.88666 4.13278 4.32330 4.51992 4.54449 4.65719 4.83447 4.87066 4.98982 5.03692 5.07747 5.17462 5.31679 5.35721 5.38922 5.50982 5.51970 5.54274 5.55365 5.62302 5.67872 5.73897 5.76483 5.81614 5.88664 5.96468 5.99169 6.07051 6.18321 6.23249 6.29420 6.34890 6.36855 6.43685 6.52414 6.61530 6.65412 6.88600 6.92684 7.05778 7.28693 7.64394 7.78798 7.87278 8.32973 8.48584 9.45227 9.99452 10.35542 11.37499 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009766 B = 0.002950 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2866.499672 B = 9488.885804 C =11878.631853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.109 4.109 3 C -0.139 4.139 4 C 0.169 3.831 5 H 0.054 0.946 6 C 0.114 3.886 7 N -0.706 5.706 8 C 0.562 3.438 9 O -0.552 6.552 10 C -0.208 4.208 11 C 0.000 4.000 12 C -0.191 4.191 13 C 0.320 3.680 14 N -0.464 5.464 15 C 0.043 3.957 16 C -0.123 4.123 17 C -0.134 4.134 18 C 0.032 3.968 19 N -0.519 5.519 20 C 0.169 3.831 21 N -0.721 5.721 22 C -0.239 4.239 23 H 0.073 0.927 24 C -0.008 4.008 25 N -0.928 5.928 26 Si 0.902 3.098 27 H -0.286 1.286 28 H -0.292 1.292 29 H -0.286 1.286 30 H 0.049 0.951 31 H 0.045 0.955 32 H 0.051 0.949 33 H 0.063 0.937 34 H 0.086 0.914 35 H 0.031 0.969 36 H 0.040 0.960 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.409 0.591 40 H 0.147 0.853 41 H 0.140 0.860 42 H 0.091 0.909 43 H 0.058 0.942 44 H 0.077 0.923 45 H 0.077 0.923 46 H 0.071 0.929 47 H 0.074 0.926 48 H 0.087 0.913 49 H 0.082 0.918 50 H 0.166 0.834 51 H 0.385 0.615 52 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.291 -12.752 9.833 16.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.131 4.131 3 C -0.196 4.196 4 C 0.058 3.942 5 H 0.072 0.928 6 C -0.010 4.010 7 N -0.357 5.357 8 C 0.348 3.652 9 O -0.432 6.432 10 C -0.215 4.215 11 C -0.026 4.026 12 C -0.213 4.213 13 C 0.088 3.912 14 N -0.182 5.182 15 C -0.082 4.082 16 C -0.162 4.162 17 C -0.172 4.172 18 C -0.094 4.094 19 N -0.232 5.232 20 C 0.010 3.990 21 N -0.363 5.363 22 C -0.370 4.370 23 H 0.090 0.910 24 C -0.205 4.205 25 N -0.576 5.576 26 Si 0.733 3.267 27 H -0.213 1.213 28 H -0.218 1.218 29 H -0.213 1.213 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.105 0.895 35 H 0.050 0.950 36 H 0.059 0.941 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.246 0.754 40 H 0.165 0.835 41 H 0.158 0.842 42 H 0.109 0.891 43 H 0.076 0.924 44 H 0.096 0.904 45 H 0.096 0.904 46 H 0.090 0.910 47 H 0.093 0.907 48 H 0.105 0.895 49 H 0.100 0.900 50 H 0.183 0.817 51 H 0.219 0.781 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -5.567 -12.752 10.307 17.316 hybrid contribution 0.970 0.778 -0.529 1.351 sum -4.597 -11.974 9.778 16.129 Atomic orbital electron populations 1.21943 0.96856 1.00974 1.00944 1.21724 0.93538 0.97804 1.00017 1.21817 1.04221 0.94606 0.98995 1.20563 0.86424 0.91065 0.96104 0.92787 1.21780 0.97361 0.93219 0.88681 1.45911 1.48258 1.10587 1.30957 1.17897 0.81146 0.81945 0.84181 1.90738 1.36966 1.68111 1.47412 1.20923 1.04389 0.96276 0.99870 1.21284 0.94349 0.92490 0.94473 1.21223 1.01019 1.01962 0.97084 1.20135 0.92787 0.89631 0.88665 1.61756 1.29899 1.09690 1.16829 1.23339 0.93905 0.93279 0.97693 1.22511 0.99236 0.97283 0.97121 1.22468 0.98422 0.94877 1.01422 1.22943 0.92623 0.95389 0.98476 1.67646 1.25507 1.09094 1.21000 1.22962 0.89092 0.99582 0.87334 1.42462 0.98703 1.21232 1.73899 1.19145 0.88751 0.96442 1.32654 0.90953 1.24716 0.96458 0.97634 1.01694 1.69648 1.07003 1.29800 1.51159 0.86357 0.79127 0.82368 0.78866 1.21257 1.21816 1.21275 0.93177 0.93564 0.93028 0.91873 0.89477 0.95011 0.94059 0.91388 0.91701 0.75382 0.83512 0.84248 0.89109 0.92368 0.90419 0.90401 0.91002 0.90739 0.89471 0.89956 0.81690 0.78093 0.93438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 8.84 37.16 0.33 -1.73 16 2 C -0.11 -1.82 2.69 -90.62 -0.24 -2.06 16 3 C -0.14 -2.46 8.26 37.16 0.31 -2.15 16 4 C 0.17 3.03 2.18 -67.93 -0.15 2.88 16 5 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 6 C 0.11 1.90 4.73 -4.04 -0.02 1.88 16 7 N -0.71 -11.67 5.34 -61.34 -0.33 -12.00 16 8 C 0.56 9.50 7.77 -12.47 -0.10 9.40 16 9 O -0.55 -10.66 16.41 5.29 0.09 -10.57 16 10 C -0.21 -3.10 5.89 -104.82 -0.62 -3.71 16 11 C 0.00 0.01 9.65 -39.29 -0.38 -0.37 16 12 C -0.19 -2.22 9.38 -39.65 -0.37 -2.59 16 13 C 0.32 4.15 6.20 -155.28 -0.96 3.18 16 14 N -0.46 -5.15 5.28 -169.26 -0.89 -6.04 16 15 C 0.04 0.37 6.03 -1.90 -0.01 0.36 16 16 C -0.12 -0.87 7.06 -24.87 -0.18 -1.04 16 17 C -0.13 -1.07 6.93 -25.36 -0.18 -1.25 16 18 C 0.03 0.35 6.34 -2.74 -0.02 0.33 16 19 N -0.52 -7.56 8.10 -12.14 -0.10 -7.66 16 20 C 0.17 2.49 10.71 -17.12 -0.18 2.30 16 21 N -0.72 -15.92 4.44 -53.42 -0.24 -16.16 16 22 C -0.24 -5.89 7.57 -15.06 -0.11 -6.01 16 23 H 0.07 1.75 7.40 -52.49 -0.39 1.36 16 24 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 25 N -0.93 -26.21 13.06 55.49 0.72 -25.49 16 26 Si 0.90 21.21 29.55 -169.99 -5.02 16.19 16 27 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 28 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 29 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.68 6.55 -51.93 -0.34 0.34 16 33 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 34 H 0.09 1.83 6.01 -51.93 -0.31 1.52 16 35 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.07 1.06 6.71 -51.92 -0.35 0.72 16 38 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.41 6.76 6.19 -40.82 -0.25 6.50 16 40 H 0.15 1.76 7.73 -52.48 -0.41 1.36 16 41 H 0.14 1.26 8.01 -52.49 -0.42 0.84 16 42 H 0.09 0.64 8.11 -51.93 -0.42 0.22 16 43 H 0.06 0.56 7.99 -51.93 -0.42 0.14 16 44 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 47 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.09 1.10 6.48 -51.93 -0.34 0.76 16 49 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 50 H 0.17 2.36 6.41 -52.49 -0.34 2.02 16 51 H 0.39 9.38 7.80 -40.82 -0.32 9.06 16 52 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 410.57 15.07 6.19 6.19 Total: -1.00 -29.41 410.57 -11.06 -40.46 By element: Atomic # 1 Polarization: 24.51 SS G_CDS: -8.50 Total: 16.01 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: -2.98 Total: -0.91 kcal Atomic # 7 Polarization: -66.53 SS G_CDS: -0.83 Total: -67.36 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: 0.09 Total: -10.57 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -29.41 -11.06 -40.46 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568466215.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.351 kcal (2) G-P(sol) polarization free energy of solvation -29.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds