Wall clock time and date at job start Wed Apr 1 2020 03:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52992 * 109.47380 * 2 1 4 4 C 1.53002 * 109.46964 * 120.00331 * 2 1 3 5 5 C 1.52999 * 109.47541 * 65.00099 * 4 2 1 6 6 H 1.09005 * 109.46849 * 304.99675 * 5 4 2 7 7 C 1.53000 * 109.47101 * 185.00071 * 5 4 2 8 8 N 1.46496 * 109.46693 * 184.99582 * 7 5 4 9 9 C 1.36949 * 119.99961 * 179.97438 * 8 7 5 10 10 H 1.07999 * 119.99601 * 0.02562 * 9 8 7 11 11 C 1.38804 * 119.99897 * 180.02562 * 9 8 7 12 12 N 1.31620 * 120.00521 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 119.99667 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47081 * 89.99961 * 13 11 9 15 15 H 1.48502 * 109.47097 * 209.99794 * 13 11 9 16 16 H 1.48504 * 109.47321 * 329.99895 * 13 11 9 17 17 N 1.46493 * 109.47132 * 64.99567 * 5 4 2 18 18 C 1.34774 * 120.00437 * 275.00066 * 17 5 4 19 19 O 1.21284 * 119.99724 * 0.02562 * 18 17 5 20 20 C 1.50697 * 120.00047 * 179.97438 * 18 17 5 21 21 H 1.08999 * 109.63778 * 299.59275 * 20 18 17 22 22 C 1.53315 * 109.63656 * 178.98138 * 20 18 17 23 23 C 1.52812 * 108.50561 * 170.47189 * 22 20 18 24 24 C 1.50446 * 110.44650 * 51.01197 * 23 22 20 25 25 N 1.32898 * 118.53057 * 162.53645 * 24 23 22 26 26 C 1.31601 * 121.05849 * 179.79663 * 25 24 23 27 27 N 1.31810 * 121.67652 * 359.95031 * 26 25 24 28 28 C 1.32189 * 120.63897 * 0.13001 * 27 26 25 29 29 C 1.37497 * 122.51091 * 342.29478 * 24 23 22 30 30 C 1.50343 * 123.00051 * 0.69523 * 29 24 23 31 31 H 1.09001 * 109.47064 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47248 * 299.99475 * 1 2 3 33 33 H 1.09000 * 109.46900 * 60.00290 * 1 2 3 34 34 H 1.08998 * 109.47352 * 239.99566 * 2 1 3 35 35 H 1.08999 * 109.47719 * 179.97438 * 3 2 1 36 36 H 1.09001 * 109.47252 * 300.00097 * 3 2 1 37 37 H 1.09001 * 109.47220 * 60.00023 * 3 2 1 38 38 H 1.09003 * 109.46925 * 304.99418 * 4 2 1 39 39 H 1.09010 * 109.47098 * 185.00188 * 4 2 1 40 40 H 1.08996 * 109.46880 * 304.99858 * 7 5 4 41 41 H 1.09002 * 109.47282 * 65.00038 * 7 5 4 42 42 H 0.97000 * 120.00813 * 0.02562 * 8 7 5 43 43 H 0.96999 * 119.99839 * 179.97438 * 12 11 9 44 44 H 0.97006 * 119.99834 * 95.00812 * 17 5 4 45 45 H 1.08999 * 109.63136 * 290.18185 * 22 20 18 46 46 H 1.09003 * 109.63306 * 50.76609 * 22 20 18 47 47 H 1.09005 * 109.30671 * 171.30717 * 23 22 20 48 48 H 1.09000 * 109.31148 * 290.90299 * 23 22 20 49 49 H 1.08008 * 119.15870 * 179.97438 * 26 25 24 50 50 H 1.08001 * 120.36390 * 180.02562 * 28 27 26 51 51 H 1.09002 * 109.30929 * 222.13443 * 30 29 24 52 52 H 1.09004 * 109.30682 * 102.53210 * 30 29 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6353 -2.1956 1.1879 6 1 0.5562 -2.2708 1.0527 7 6 2.0354 -2.8889 2.4918 8 7 1.7569 -4.3233 2.3874 9 6 2.0358 -5.1534 3.4403 10 1 2.4608 -4.7504 4.3477 11 6 1.7724 -6.5127 3.3412 12 7 1.2550 -7.0039 2.2351 13 14 2.1523 -7.6448 4.7777 14 1 0.9657 -7.7323 5.6662 15 1 2.4886 -8.9978 4.2662 16 1 3.3047 -7.1043 5.5427 17 7 2.3147 -2.8421 0.0626 18 6 1.7814 -2.7779 -1.1735 19 8 0.7392 -2.1845 -1.3543 20 6 2.4807 -3.4425 -2.3312 21 1 3.4728 -3.0090 -2.4577 22 6 1.6603 -3.2444 -3.6112 23 6 2.4968 -3.7134 -4.8009 24 6 3.0351 -5.0961 -4.5524 25 7 3.4777 -5.8007 -5.5886 26 6 3.9625 -7.0136 -5.4276 27 7 4.0311 -7.5794 -4.2391 28 6 3.6080 -6.9393 -3.1628 29 6 3.0899 -5.6531 -3.2964 30 6 2.6057 -4.9420 -2.0635 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.8934 -0.5139 -0.8899 35 1 3.1300 1.4425 0.0005 36 1 1.6767 1.9563 -0.8900 37 1 1.6767 1.9563 0.8900 38 1 1.6054 -0.2618 2.1370 39 1 3.1264 -0.6444 1.2952 40 1 3.0996 -2.7375 2.6720 41 1 1.4633 -2.4669 3.3181 42 1 1.3756 -4.6854 1.5723 43 1 1.0713 -7.9538 2.1658 44 1 3.1484 -3.3165 0.2071 45 1 0.7439 -3.8318 -3.5534 46 1 1.4151 -2.1889 -3.7293 47 1 1.8754 -3.7242 -5.6964 48 1 3.3301 -3.0265 -4.9488 49 1 4.3134 -7.5589 -6.2913 50 1 3.6666 -7.4070 -2.1911 51 1 3.3143 -5.1053 -1.2515 52 1 1.6318 -5.3394 -1.7773 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667092662.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:32 Heat of formation + Delta-G solvation = -4.201781 kcal Electronic energy + Delta-G solvation = -31668.866210 eV Core-core repulsion = 27667.555890 eV Total energy + Delta-G solvation = -4001.310321 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.45115 -40.06489 -37.48536 -36.15193 -34.99903 -34.13088 -33.45072 -31.53685 -31.35194 -30.30497 -28.93408 -26.91774 -25.63637 -25.35508 -24.34209 -23.06779 -22.91241 -21.57882 -20.44648 -19.72009 -19.60637 -17.89930 -17.30698 -17.03936 -16.61653 -16.05802 -15.57388 -15.27498 -14.83011 -14.67850 -14.22711 -14.02649 -13.95292 -13.86407 -13.73973 -13.42366 -13.32563 -13.06728 -13.02807 -12.85992 -12.31630 -12.22771 -12.06842 -12.05383 -11.72516 -11.53986 -11.22388 -11.11506 -11.00901 -10.97673 -10.86139 -10.85092 -10.54998 -10.45905 -10.27759 -10.25667 -10.03276 -9.77043 -9.38940 -9.26446 -9.23174 -8.96879 -8.61940 -7.01751 -5.84617 -3.13807 0.84344 0.97803 2.87398 3.38283 3.43811 3.45369 3.45555 3.67479 3.89205 4.15582 4.36279 4.48106 4.51518 4.58193 4.72687 4.91335 4.95038 5.12851 5.15629 5.16033 5.23134 5.28258 5.35045 5.44424 5.48099 5.56455 5.60813 5.62150 5.68420 5.70322 5.80473 5.84594 5.94326 6.00052 6.01175 6.04308 6.08171 6.09200 6.15994 6.17821 6.26920 6.38468 6.41973 6.46048 6.63139 6.64286 6.81666 6.91610 6.94388 7.63005 7.85436 8.01353 8.33703 8.53588 9.46122 10.01231 10.37132 11.37565 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.006412 B = 0.004523 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4365.894085 B = 6189.041016 C =10089.023220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.092 4.092 3 C -0.147 4.147 4 C -0.122 4.122 5 C 0.136 3.864 6 H 0.091 0.909 7 C 0.143 3.857 8 N -0.730 5.730 9 C -0.242 4.242 10 H 0.070 0.930 11 C -0.009 4.009 12 N -0.930 5.930 13 Si 0.905 3.095 14 H -0.290 1.290 15 H -0.291 1.291 16 H -0.282 1.282 17 N -0.708 5.708 18 C 0.519 3.481 19 O -0.533 6.533 20 C -0.107 4.107 21 H 0.096 0.904 22 C -0.097 4.097 23 C -0.071 4.071 24 C 0.175 3.825 25 N -0.525 5.525 26 C 0.283 3.717 27 N -0.522 5.522 28 C 0.155 3.845 29 C -0.170 4.170 30 C -0.066 4.066 31 H 0.076 0.924 32 H 0.037 0.963 33 H 0.042 0.958 34 H 0.075 0.925 35 H 0.047 0.953 36 H 0.048 0.952 37 H 0.049 0.951 38 H 0.069 0.931 39 H 0.061 0.939 40 H 0.023 0.977 41 H 0.032 0.968 42 H 0.386 0.614 43 H 0.255 0.745 44 H 0.402 0.598 45 H 0.075 0.925 46 H 0.087 0.913 47 H 0.092 0.908 48 H 0.089 0.911 49 H 0.193 0.807 50 H 0.174 0.826 51 H 0.093 0.907 52 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.651 10.328 -12.740 17.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.110 4.110 3 C -0.204 4.204 4 C -0.161 4.161 5 C 0.031 3.969 6 H 0.109 0.891 7 C 0.015 3.985 8 N -0.375 5.375 9 C -0.374 4.374 10 H 0.088 0.912 11 C -0.206 4.206 12 N -0.579 5.579 13 Si 0.736 3.264 14 H -0.217 1.217 15 H -0.218 1.218 16 H -0.208 1.208 17 N -0.358 5.358 18 C 0.304 3.696 19 O -0.411 6.411 20 C -0.129 4.129 21 H 0.114 0.886 22 C -0.136 4.136 23 C -0.109 4.109 24 C 0.031 3.969 25 N -0.239 5.239 26 C -0.005 4.005 27 N -0.236 5.236 28 C -0.012 4.012 29 C -0.174 4.174 30 C -0.105 4.105 31 H 0.095 0.905 32 H 0.056 0.944 33 H 0.061 0.939 34 H 0.093 0.907 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.087 0.913 39 H 0.079 0.921 40 H 0.041 0.959 41 H 0.050 0.950 42 H 0.220 0.780 43 H 0.065 0.935 44 H 0.237 0.763 45 H 0.094 0.906 46 H 0.105 0.895 47 H 0.110 0.890 48 H 0.107 0.893 49 H 0.209 0.791 50 H 0.191 0.809 51 H 0.111 0.889 52 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 4.285 10.188 -13.505 17.450 hybrid contribution 0.312 -0.806 1.405 1.650 sum 4.597 9.382 -12.100 15.986 Atomic orbital electron populations 1.21828 0.94949 1.03103 0.99603 1.21129 0.96562 0.94727 0.98572 1.21874 1.00291 0.97097 1.01139 1.22021 1.00776 0.94956 0.98365 1.21363 0.98459 0.90989 0.86076 0.89137 1.20965 0.97785 0.86493 0.93221 1.42324 1.76636 1.00879 1.17659 1.19207 1.34937 0.88907 0.94300 0.91239 1.24702 1.01638 0.96867 0.97359 1.69648 1.49505 1.12762 1.25964 0.86229 0.77889 0.80441 0.81827 1.21734 1.21764 1.20795 1.45998 1.27255 1.55289 1.07289 1.20282 0.85431 0.79945 0.83895 1.90684 1.22976 1.43049 1.84373 1.21357 1.00810 0.96064 0.94631 0.88559 1.21411 0.97915 1.03180 0.91064 1.20460 1.00233 0.90226 0.99973 1.21270 0.91396 0.96200 0.88043 1.68369 1.12169 1.08688 1.34637 1.24847 0.92211 0.88628 0.94844 1.68432 1.17586 1.37681 0.99876 1.23542 0.89128 0.90309 0.98221 1.21161 1.02009 0.97374 0.96844 1.20344 1.03690 0.92287 0.94131 0.90485 0.94386 0.93891 0.90678 0.93377 0.93262 0.93160 0.91259 0.92060 0.95913 0.95039 0.78011 0.93509 0.76298 0.90594 0.89475 0.88956 0.89283 0.79069 0.80914 0.88879 0.88542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 8.04 37.16 0.30 -1.55 16 2 C -0.09 -1.14 2.38 -90.62 -0.22 -1.36 16 3 C -0.15 -1.57 9.19 37.15 0.34 -1.23 16 4 C -0.12 -1.55 4.36 -26.73 -0.12 -1.66 16 5 C 0.14 2.04 2.33 -67.93 -0.16 1.88 16 6 H 0.09 1.56 5.92 -51.93 -0.31 1.26 16 7 C 0.14 2.59 5.82 -4.04 -0.02 2.57 16 8 N -0.73 -16.83 5.43 -59.91 -0.33 -17.15 16 9 C -0.24 -6.36 9.99 -15.06 -0.15 -6.51 16 10 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 11 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 12 N -0.93 -26.39 13.06 55.49 0.72 -25.67 16 13 Si 0.91 21.53 29.55 -169.99 -5.02 16.50 16 14 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 15 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 16 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 17 N -0.71 -9.66 4.37 -53.81 -0.24 -9.90 16 18 C 0.52 6.94 5.70 -10.99 -0.06 6.87 16 19 O -0.53 -8.30 10.80 5.55 0.06 -8.24 16 20 C -0.11 -1.16 2.55 -91.70 -0.23 -1.39 16 21 H 0.10 0.89 8.10 -51.93 -0.42 0.47 16 22 C -0.10 -1.00 4.71 -26.66 -0.13 -1.13 16 23 C -0.07 -0.68 5.96 -28.10 -0.17 -0.84 16 24 C 0.17 2.06 6.62 -82.52 -0.55 1.52 16 25 N -0.52 -6.53 10.32 -11.06 -0.11 -6.64 16 26 C 0.28 3.34 12.29 -92.31 -1.13 2.20 16 27 N -0.52 -6.88 10.44 -14.47 -0.15 -7.04 16 28 C 0.16 1.97 10.94 -17.00 -0.19 1.79 16 29 C -0.17 -2.04 5.73 -104.67 -0.60 -2.64 16 30 C -0.07 -0.78 4.87 -28.14 -0.14 -0.91 16 31 H 0.08 1.20 4.76 -51.93 -0.25 0.95 16 32 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 1.02 5.19 -51.93 -0.27 0.75 16 35 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.06 0.73 8.14 -51.92 -0.42 0.31 16 40 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 41 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.39 9.38 7.33 -40.82 -0.30 9.08 16 43 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 44 H 0.40 5.29 8.22 -40.82 -0.34 4.95 16 45 H 0.08 0.88 8.10 -51.93 -0.42 0.46 16 46 H 0.09 0.88 7.80 -51.93 -0.41 0.48 16 47 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 48 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 49 H 0.19 1.61 8.06 -52.48 -0.42 1.19 16 50 H 0.17 2.01 8.06 -52.49 -0.42 1.59 16 51 H 0.09 1.09 7.83 -51.93 -0.41 0.68 16 52 H 0.10 1.32 8.11 -51.93 -0.42 0.90 16 LS Contribution 405.47 15.07 6.11 6.11 Total: -1.00 -30.31 405.47 -10.84 -41.15 By element: Atomic # 1 Polarization: 22.19 SS G_CDS: -8.58 Total: 13.61 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: -3.31 Total: -2.74 kcal Atomic # 7 Polarization: -66.30 SS G_CDS: -0.10 Total: -66.40 kcal Atomic # 8 Polarization: -8.30 SS G_CDS: 0.06 Total: -8.24 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -30.31 -10.84 -41.15 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667092662.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.951 kcal (2) G-P(sol) polarization free energy of solvation -30.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds