Wall clock time and date at job start Wed Apr 1 2020 03:53:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52992 * 109.47380 * 2 1 4 4 C 1.53002 * 109.46964 * 120.00331 * 2 1 3 5 5 C 1.52999 * 109.47541 * 65.00099 * 4 2 1 6 6 H 1.09005 * 109.46849 * 304.99675 * 5 4 2 7 7 C 1.53000 * 109.47101 * 185.00071 * 5 4 2 8 8 N 1.46496 * 109.46693 * 184.99582 * 7 5 4 9 9 C 1.36949 * 119.99961 * 179.97438 * 8 7 5 10 10 H 1.07999 * 119.99601 * 0.02562 * 9 8 7 11 11 C 1.38804 * 119.99897 * 180.02562 * 9 8 7 12 12 N 1.31620 * 120.00521 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 119.99667 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47081 * 89.99961 * 13 11 9 15 15 H 1.48502 * 109.47097 * 209.99794 * 13 11 9 16 16 H 1.48504 * 109.47321 * 329.99895 * 13 11 9 17 17 N 1.46493 * 109.47132 * 64.99567 * 5 4 2 18 18 C 1.34774 * 120.00437 * 275.00066 * 17 5 4 19 19 O 1.21284 * 119.99724 * 0.02562 * 18 17 5 20 20 C 1.50697 * 120.00047 * 179.97438 * 18 17 5 21 21 H 1.08999 * 109.63778 * 299.59275 * 20 18 17 22 22 C 1.53315 * 109.63656 * 178.98138 * 20 18 17 23 23 C 1.52812 * 108.50561 * 170.47189 * 22 20 18 24 24 C 1.50446 * 110.44650 * 51.01197 * 23 22 20 25 25 N 1.32898 * 118.53057 * 162.53645 * 24 23 22 26 26 C 1.31601 * 121.05849 * 179.79663 * 25 24 23 27 27 N 1.31810 * 121.67652 * 359.95031 * 26 25 24 28 28 C 1.32189 * 120.63897 * 0.13001 * 27 26 25 29 29 C 1.37497 * 122.51091 * 342.29478 * 24 23 22 30 30 C 1.50343 * 123.00051 * 0.69523 * 29 24 23 31 31 H 1.09001 * 109.47064 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47248 * 299.99475 * 1 2 3 33 33 H 1.09000 * 109.46900 * 60.00290 * 1 2 3 34 34 H 1.08998 * 109.47352 * 239.99566 * 2 1 3 35 35 H 1.08999 * 109.47719 * 179.97438 * 3 2 1 36 36 H 1.09001 * 109.47252 * 300.00097 * 3 2 1 37 37 H 1.09001 * 109.47220 * 60.00023 * 3 2 1 38 38 H 1.09003 * 109.46925 * 304.99418 * 4 2 1 39 39 H 1.09010 * 109.47098 * 185.00188 * 4 2 1 40 40 H 1.08996 * 109.46880 * 304.99858 * 7 5 4 41 41 H 1.09002 * 109.47282 * 65.00038 * 7 5 4 42 42 H 0.97000 * 120.00813 * 0.02562 * 8 7 5 43 43 H 0.96999 * 119.99839 * 179.97438 * 12 11 9 44 44 H 0.97006 * 119.99834 * 95.00812 * 17 5 4 45 45 H 1.08999 * 109.63136 * 290.18185 * 22 20 18 46 46 H 1.09003 * 109.63306 * 50.76609 * 22 20 18 47 47 H 1.09005 * 109.30671 * 171.30717 * 23 22 20 48 48 H 1.09000 * 109.31148 * 290.90299 * 23 22 20 49 49 H 1.08008 * 119.15870 * 179.97438 * 26 25 24 50 50 H 1.08001 * 120.36390 * 180.02562 * 28 27 26 51 51 H 1.09002 * 109.30929 * 222.13443 * 30 29 24 52 52 H 1.09004 * 109.30682 * 102.53210 * 30 29 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6353 -2.1956 1.1879 6 1 0.5562 -2.2708 1.0527 7 6 2.0354 -2.8889 2.4918 8 7 1.7569 -4.3233 2.3874 9 6 2.0358 -5.1534 3.4403 10 1 2.4608 -4.7504 4.3477 11 6 1.7724 -6.5127 3.3412 12 7 1.2550 -7.0039 2.2351 13 14 2.1523 -7.6448 4.7777 14 1 0.9657 -7.7323 5.6662 15 1 2.4886 -8.9978 4.2662 16 1 3.3047 -7.1043 5.5427 17 7 2.3147 -2.8421 0.0626 18 6 1.7814 -2.7779 -1.1735 19 8 0.7392 -2.1845 -1.3543 20 6 2.4807 -3.4425 -2.3312 21 1 3.4728 -3.0090 -2.4577 22 6 1.6603 -3.2444 -3.6112 23 6 2.4968 -3.7134 -4.8009 24 6 3.0351 -5.0961 -4.5524 25 7 3.4777 -5.8007 -5.5886 26 6 3.9625 -7.0136 -5.4276 27 7 4.0311 -7.5794 -4.2391 28 6 3.6080 -6.9393 -3.1628 29 6 3.0899 -5.6531 -3.2964 30 6 2.6057 -4.9420 -2.0635 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.8934 -0.5139 -0.8899 35 1 3.1300 1.4425 0.0005 36 1 1.6767 1.9563 -0.8900 37 1 1.6767 1.9563 0.8900 38 1 1.6054 -0.2618 2.1370 39 1 3.1264 -0.6444 1.2952 40 1 3.0996 -2.7375 2.6720 41 1 1.4633 -2.4669 3.3181 42 1 1.3756 -4.6854 1.5723 43 1 1.0713 -7.9538 2.1658 44 1 3.1484 -3.3165 0.2071 45 1 0.7439 -3.8318 -3.5534 46 1 1.4151 -2.1889 -3.7293 47 1 1.8754 -3.7242 -5.6964 48 1 3.3301 -3.0265 -4.9488 49 1 4.3134 -7.5589 -6.2913 50 1 3.6666 -7.4070 -2.1911 51 1 3.3143 -5.1053 -1.2515 52 1 1.6318 -5.3394 -1.7773 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667092662.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:31 Heat of formation + Delta-G solvation = -21.165997 kcal Electronic energy + Delta-G solvation = -31669.601834 eV Core-core repulsion = 27667.555890 eV Total energy + Delta-G solvation = -4002.045944 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.39158 -41.16709 -38.55088 -37.26220 -36.38612 -35.15362 -34.85208 -33.00727 -32.41020 -31.47600 -30.18485 -27.90297 -27.13912 -26.35502 -25.32033 -24.56077 -23.99143 -22.76308 -21.61580 -20.77739 -20.59624 -19.24257 -18.77871 -17.99432 -17.69625 -17.22088 -16.84993 -16.38222 -16.21717 -15.81377 -15.41825 -15.24872 -15.12051 -14.86773 -14.78370 -14.60908 -14.47343 -14.41757 -14.23633 -13.97390 -13.59411 -13.28042 -13.10558 -13.03373 -12.93606 -12.78172 -12.68701 -12.50162 -12.29531 -12.14433 -12.06329 -11.92527 -11.84920 -11.79528 -11.56188 -11.36494 -11.32958 -11.17385 -10.94315 -10.47891 -10.21949 -10.18777 -9.78177 -8.95826 -7.91244 -5.19150 -0.09279 0.02258 1.49573 1.50801 1.58256 1.78893 2.35598 2.58156 2.73541 3.03637 3.26042 3.42908 3.45137 3.53910 3.64277 3.71599 3.84585 3.99343 4.07435 4.14374 4.27761 4.29495 4.30667 4.37965 4.45110 4.47971 4.51406 4.57765 4.68908 4.72999 4.84108 4.85645 4.92576 4.94483 4.95684 4.98949 5.05180 5.10657 5.14975 5.15042 5.22168 5.29358 5.31306 5.44313 5.47584 5.54900 5.63265 5.70097 5.75758 5.97541 6.29875 6.74525 7.07789 7.38486 7.44084 8.12202 8.36919 9.31016 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.006412 B = 0.004523 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4365.894085 B = 6189.041016 C =10089.023220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.087 4.087 3 C -0.142 4.142 4 C -0.114 4.114 5 C 0.148 3.852 6 H 0.065 0.935 7 C 0.144 3.856 8 N -0.739 5.739 9 C -0.242 4.242 10 H 0.074 0.926 11 C -0.066 4.066 12 N -0.961 5.961 13 Si 0.964 3.036 14 H -0.294 1.294 15 H -0.298 1.298 16 H -0.270 1.270 17 N -0.706 5.706 18 C 0.517 3.483 19 O -0.555 6.555 20 C -0.097 4.097 21 H 0.122 0.878 22 C -0.090 4.090 23 C -0.064 4.064 24 C 0.172 3.828 25 N -0.534 5.534 26 C 0.280 3.720 27 N -0.541 5.541 28 C 0.144 3.856 29 C -0.175 4.175 30 C -0.056 4.056 31 H 0.050 0.950 32 H 0.044 0.956 33 H 0.042 0.958 34 H 0.065 0.935 35 H 0.057 0.943 36 H 0.052 0.948 37 H 0.055 0.945 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.036 0.964 41 H 0.030 0.970 42 H 0.377 0.623 43 H 0.249 0.751 44 H 0.406 0.594 45 H 0.057 0.943 46 H 0.093 0.907 47 H 0.101 0.899 48 H 0.110 0.890 49 H 0.222 0.778 50 H 0.175 0.825 51 H 0.091 0.909 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.112 11.932 -13.134 18.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.106 4.106 3 C -0.199 4.199 4 C -0.153 4.153 5 C 0.042 3.958 6 H 0.083 0.917 7 C 0.017 3.983 8 N -0.382 5.382 9 C -0.374 4.374 10 H 0.092 0.908 11 C -0.259 4.259 12 N -0.612 5.612 13 Si 0.794 3.206 14 H -0.221 1.221 15 H -0.224 1.224 16 H -0.195 1.195 17 N -0.357 5.357 18 C 0.304 3.696 19 O -0.434 6.434 20 C -0.118 4.118 21 H 0.139 0.861 22 C -0.129 4.129 23 C -0.101 4.101 24 C 0.028 3.972 25 N -0.248 5.248 26 C -0.008 4.008 27 N -0.255 5.255 28 C -0.023 4.023 29 C -0.179 4.179 30 C -0.095 4.095 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.054 0.946 41 H 0.048 0.952 42 H 0.209 0.791 43 H 0.058 0.942 44 H 0.241 0.759 45 H 0.076 0.924 46 H 0.111 0.889 47 H 0.120 0.880 48 H 0.128 0.872 49 H 0.239 0.761 50 H 0.192 0.808 51 H 0.110 0.890 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 5.768 11.828 -13.879 19.126 hybrid contribution -0.177 -1.267 1.527 1.993 sum 5.591 10.561 -12.351 17.185 Atomic orbital electron populations 1.21762 0.95891 1.01463 0.99933 1.21065 0.95679 0.95978 0.97871 1.21816 1.00903 0.95500 1.01674 1.21956 1.01621 0.92847 0.98854 1.21115 0.97110 0.92443 0.85091 0.91666 1.21101 0.98302 0.83990 0.94894 1.42468 1.76455 1.02726 1.16600 1.19571 1.33434 0.89433 0.94970 0.90762 1.25387 1.02596 0.98349 0.99522 1.69790 1.51262 1.12461 1.27671 0.85290 0.77742 0.78363 0.79226 1.22112 1.22434 1.19454 1.45962 1.27261 1.55327 1.07157 1.20689 0.85139 0.79526 0.84221 1.90685 1.23923 1.44082 1.84693 1.21329 1.01829 0.94972 0.93673 0.86054 1.21335 0.97216 1.03183 0.91121 1.20482 1.00779 0.89189 0.99647 1.21660 0.90712 0.97067 0.87756 1.68457 1.12672 1.09028 1.34669 1.25477 0.91354 0.88653 0.95285 1.68467 1.18406 1.38214 1.00425 1.23675 0.89363 0.90770 0.98480 1.21120 1.02481 0.97252 0.97058 1.20181 1.02168 0.92927 0.94178 0.93077 0.93681 0.93874 0.91641 0.92352 0.92846 0.92563 0.90649 0.90663 0.94564 0.95195 0.79089 0.94216 0.75877 0.92439 0.88878 0.88049 0.87166 0.76146 0.80822 0.89025 0.91156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.50 8.04 71.98 0.58 -2.92 16 2 C -0.09 -2.04 2.38 -10.80 -0.03 -2.07 16 3 C -0.14 -2.66 9.19 71.98 0.66 -2.00 16 4 C -0.11 -2.69 4.36 30.59 0.13 -2.55 16 5 C 0.15 4.38 2.33 44.99 0.10 4.48 16 6 H 0.07 2.31 5.92 -2.38 -0.01 2.29 16 7 C 0.14 5.11 5.82 86.38 0.50 5.61 16 8 N -0.74 -34.22 5.43 -343.46 -1.87 -36.09 16 9 C -0.24 -12.65 9.99 84.03 0.84 -11.81 16 10 H 0.07 3.74 7.83 -2.91 -0.02 3.72 16 11 C -0.07 -3.57 5.50 84.86 0.47 -3.10 16 12 N -0.96 -55.61 13.06 21.65 0.28 -55.32 16 13 Si 0.96 44.41 29.55 68.60 2.03 46.43 16 14 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 15 H -0.30 -13.90 7.11 99.48 0.71 -13.20 16 16 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 17 N -0.71 -19.04 4.37 -442.54 -1.94 -20.97 16 18 C 0.52 13.72 5.70 87.66 0.50 14.22 16 19 O -0.55 -17.38 10.80 -3.04 -0.03 -17.42 16 20 C -0.10 -2.01 2.55 -11.49 -0.03 -2.04 16 21 H 0.12 1.96 8.10 -2.39 -0.02 1.94 16 22 C -0.09 -1.76 4.71 30.64 0.14 -1.62 16 23 C -0.06 -1.08 5.96 29.71 0.18 -0.90 16 24 C 0.17 3.86 6.62 42.14 0.28 4.14 16 25 N -0.53 -12.52 10.32 -188.91 -1.95 -14.47 16 26 C 0.28 6.27 12.29 180.94 2.22 8.49 16 27 N -0.54 -14.08 10.44 -199.70 -2.09 -16.17 16 28 C 0.14 3.70 10.94 84.90 0.93 4.63 16 29 C -0.18 -4.18 5.73 -19.90 -0.11 -4.30 16 30 C -0.06 -1.33 4.87 29.68 0.14 -1.19 16 31 H 0.05 1.62 4.76 -2.39 -0.01 1.61 16 32 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.07 1.68 5.19 -2.39 -0.01 1.67 16 35 H 0.06 0.98 8.14 -2.39 -0.02 0.97 16 36 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.07 1.59 8.14 -2.38 -0.02 1.58 16 40 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.38 18.73 7.33 -92.71 -0.68 18.05 16 43 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 44 H 0.41 10.41 8.22 -92.70 -0.76 9.65 16 45 H 0.06 1.34 8.10 -2.39 -0.02 1.32 16 46 H 0.09 1.75 7.80 -2.39 -0.02 1.73 16 47 H 0.10 1.60 8.14 -2.38 -0.02 1.58 16 48 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 49 H 0.22 3.30 8.06 -2.91 -0.02 3.28 16 50 H 0.17 4.24 8.06 -2.91 -0.02 4.21 16 51 H 0.09 2.18 7.83 -2.39 -0.02 2.16 16 52 H 0.07 2.05 8.11 -2.38 -0.02 2.03 16 Total: -1.00 -64.82 405.47 1.45 -63.37 By element: Atomic # 1 Polarization: 44.07 SS G_CDS: -0.51 Total: 43.56 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: 7.51 Total: 7.07 kcal Atomic # 7 Polarization: -135.47 SS G_CDS: -7.55 Total: -143.02 kcal Atomic # 8 Polarization: -17.38 SS G_CDS: -0.03 Total: -17.42 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.43 kcal Total: -64.82 1.45 -63.37 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667092662.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.208 kcal (2) G-P(sol) polarization free energy of solvation -64.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds