Wall clock time and date at job start Wed Apr 1 2020 03:53:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46891 * 2 1 4 4 C 1.53000 * 109.47268 * 119.99884 * 2 1 3 5 5 C 1.52994 * 109.47356 * 175.00333 * 4 2 1 6 6 H 1.09000 * 109.47017 * 54.99628 * 5 4 2 7 7 C 1.52997 * 109.47404 * 174.99986 * 5 4 2 8 8 N 1.46505 * 109.47212 * 174.99693 * 7 5 4 9 9 C 1.36936 * 119.99992 * 179.97438 * 8 7 5 10 10 H 1.08006 * 119.99834 * 0.02562 * 9 8 7 11 11 C 1.38801 * 120.00093 * 180.02562 * 9 8 7 12 12 N 1.31619 * 120.00176 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 120.00265 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.46968 * 0.02562 * 13 11 9 15 15 H 1.48497 * 109.47299 * 119.99957 * 13 11 9 16 16 H 1.48495 * 109.47075 * 240.00117 * 13 11 9 17 17 N 1.46500 * 109.46849 * 295.00050 * 5 4 2 18 18 C 1.34779 * 120.00196 * 84.99779 * 17 5 4 19 19 O 1.21277 * 119.99823 * 0.02562 * 18 17 5 20 20 C 1.50698 * 119.99934 * 180.02562 * 18 17 5 21 21 H 1.08990 * 109.63623 * 59.59851 * 20 18 17 22 22 C 1.53314 * 109.63372 * 180.02562 * 20 18 17 23 23 C 1.52809 * 108.51752 * 189.48157 * 22 20 18 24 24 C 1.50446 * 110.45305 * 308.96590 * 23 22 20 25 25 N 1.32893 * 118.53922 * 197.67122 * 24 23 22 26 26 C 1.31597 * 121.06142 * 180.22399 * 25 24 23 27 27 N 1.31815 * 121.67805 * 0.03086 * 26 25 24 28 28 C 1.32192 * 120.63354 * 359.88571 * 27 26 25 29 29 C 1.37771 * 122.57818 * 17.71548 * 24 23 22 30 30 C 1.50343 * 122.80049 * 359.36210 * 29 24 23 31 31 H 1.09003 * 109.47377 * 300.00047 * 1 2 3 32 32 H 1.09005 * 109.47252 * 59.99825 * 1 2 3 33 33 H 1.08996 * 109.46698 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.46933 * 240.00251 * 2 1 3 35 35 H 1.08993 * 109.47222 * 59.99801 * 3 2 1 36 36 H 1.08997 * 109.47141 * 180.02562 * 3 2 1 37 37 H 1.09009 * 109.47128 * 299.99670 * 3 2 1 38 38 H 1.08996 * 109.46705 * 54.99807 * 4 2 1 39 39 H 1.09004 * 109.46936 * 295.00284 * 4 2 1 40 40 H 1.09002 * 109.47153 * 54.99686 * 7 5 4 41 41 H 1.09001 * 109.46832 * 294.99876 * 7 5 4 42 42 H 0.96996 * 119.99606 * 0.02562 * 8 7 5 43 43 H 0.97001 * 120.00803 * 179.97438 * 12 11 9 44 44 H 0.96998 * 120.00051 * 264.99732 * 17 5 4 45 45 H 1.08998 * 109.62849 * 309.18725 * 22 20 18 46 46 H 1.08998 * 109.63451 * 69.77121 * 22 20 18 47 47 H 1.09000 * 109.31103 * 69.26786 * 23 22 20 48 48 H 1.08999 * 109.30643 * 188.66714 * 23 22 20 49 49 H 1.08007 * 119.16530 * 180.02562 * 26 25 24 50 50 H 1.08007 * 120.35989 * 179.97438 * 28 27 26 51 51 H 1.09000 * 109.30151 * 257.27921 * 30 29 24 52 52 H 1.09000 * 109.31499 * 137.87780 * 30 29 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5648 -0.8309 1.1880 6 1 3.9953 0.1613 1.0527 7 6 4.0852 -1.4393 2.4919 8 7 5.5305 -1.6549 2.3875 9 6 6.2202 -2.1936 3.4407 10 1 5.6986 -2.4599 4.3482 11 6 7.5896 -2.3974 3.3421 12 7 8.2254 -2.0725 2.2364 13 14 8.5304 -3.1329 4.7786 14 1 7.5916 -3.4093 5.8956 15 1 9.1764 -4.3997 4.3506 16 1 9.5709 -2.1750 5.2313 17 7 3.9480 -1.6871 0.0627 18 6 4.0651 -1.1629 -1.1735 19 8 3.8539 0.0176 -1.3541 20 6 4.4587 -2.0438 -2.3312 21 1 3.7270 -2.8430 -2.4486 22 6 4.5211 -1.2090 -3.6157 23 6 4.6863 -2.1569 -4.8028 24 6 5.8267 -3.1080 -4.5615 25 7 6.3453 -3.7541 -5.6006 26 6 7.3408 -4.6007 -5.4457 27 7 7.8643 -4.8444 -4.2607 28 6 7.4008 -4.2371 -3.1818 29 6 6.3514 -3.3342 -3.3079 30 6 5.8415 -2.6419 -2.0745 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3632 -1.0276 0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.6766 1.9563 0.8899 36 1 3.1299 1.4426 -0.0005 37 1 1.6766 1.9564 -0.8901 38 1 1.6054 -1.7197 1.2951 39 1 1.7516 -0.1583 2.1370 40 1 3.5877 -2.3922 2.6722 41 1 3.8780 -0.7592 3.3181 42 1 5.9989 -1.4154 1.5726 43 1 9.1825 -2.2145 2.1675 44 1 4.1173 -2.6312 0.2072 45 1 3.5985 -0.6396 -3.7274 46 1 5.3714 -0.5286 -3.5693 47 1 3.7664 -2.7250 -4.9412 48 1 4.8862 -1.5756 -5.7030 49 1 7.7391 -5.1089 -6.3115 50 1 7.8328 -4.4404 -2.2130 51 1 6.5325 -1.8461 -1.7964 52 1 5.7773 -3.3611 -1.2580 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667092663.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:37 Heat of formation + Delta-G solvation = -4.339528 kcal Electronic energy + Delta-G solvation = -31664.964719 eV Core-core repulsion = 27663.648425 eV Total energy + Delta-G solvation = -4001.316294 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.44831 -40.06635 -37.48474 -36.14907 -35.00006 -34.13598 -33.45333 -31.54202 -31.35193 -30.30659 -28.93755 -26.91837 -25.63881 -25.35788 -24.34812 -23.05805 -22.91625 -21.58446 -20.44692 -19.72339 -19.60555 -17.89986 -17.30887 -17.04078 -16.62267 -16.05655 -15.57497 -15.27319 -14.83443 -14.67955 -14.22532 -14.02591 -13.95423 -13.86391 -13.73885 -13.42472 -13.33228 -13.06843 -13.02714 -12.86075 -12.31925 -12.22911 -12.07013 -12.05541 -11.72850 -11.54148 -11.22415 -11.11726 -11.01370 -10.97963 -10.87286 -10.85243 -10.54849 -10.45903 -10.27536 -10.24267 -10.02011 -9.77587 -9.39091 -9.26392 -9.23282 -8.97652 -8.62048 -7.01862 -5.84877 -3.14030 0.84263 0.97726 2.87217 3.37711 3.43854 3.45249 3.46264 3.67452 3.88999 4.15552 4.36603 4.47956 4.51309 4.57982 4.72466 4.91174 4.94884 5.12815 5.15538 5.16050 5.23267 5.28002 5.34795 5.44343 5.47998 5.56381 5.60881 5.62034 5.68330 5.70250 5.80135 5.84476 5.94200 5.99842 6.01057 6.04478 6.08089 6.09105 6.15797 6.17645 6.26835 6.38414 6.41865 6.45930 6.63003 6.64155 6.81563 6.91581 6.94273 7.63322 7.85363 8.01334 8.33377 8.53497 9.45914 10.01010 10.36964 11.37386 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.006419 B = 0.004515 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4360.925709 B = 6200.305556 C =10101.786706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.092 4.092 3 C -0.138 4.138 4 C -0.122 4.122 5 C 0.136 3.864 6 H 0.091 0.909 7 C 0.143 3.857 8 N -0.730 5.730 9 C -0.242 4.242 10 H 0.070 0.930 11 C -0.010 4.010 12 N -0.930 5.930 13 Si 0.905 3.095 14 H -0.281 1.281 15 H -0.291 1.291 16 H -0.292 1.292 17 N -0.708 5.708 18 C 0.519 3.481 19 O -0.533 6.533 20 C -0.107 4.107 21 H 0.096 0.904 22 C -0.097 4.097 23 C -0.071 4.071 24 C 0.175 3.825 25 N -0.525 5.525 26 C 0.283 3.717 27 N -0.522 5.522 28 C 0.155 3.845 29 C -0.169 4.169 30 C -0.066 4.066 31 H 0.049 0.951 32 H 0.048 0.952 33 H 0.047 0.953 34 H 0.075 0.925 35 H 0.037 0.963 36 H 0.076 0.924 37 H 0.042 0.958 38 H 0.061 0.939 39 H 0.069 0.931 40 H 0.023 0.977 41 H 0.032 0.968 42 H 0.386 0.614 43 H 0.255 0.745 44 H 0.402 0.598 45 H 0.086 0.914 46 H 0.075 0.925 47 H 0.089 0.911 48 H 0.092 0.908 49 H 0.193 0.807 50 H 0.173 0.827 51 H 0.096 0.904 52 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.341 -0.906 -12.745 17.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.110 4.110 3 C -0.195 4.195 4 C -0.161 4.161 5 C 0.031 3.969 6 H 0.109 0.891 7 C 0.015 3.985 8 N -0.375 5.375 9 C -0.373 4.373 10 H 0.088 0.912 11 C -0.206 4.206 12 N -0.579 5.579 13 Si 0.736 3.264 14 H -0.206 1.206 15 H -0.219 1.219 16 H -0.219 1.219 17 N -0.358 5.358 18 C 0.305 3.695 19 O -0.411 6.411 20 C -0.128 4.128 21 H 0.114 0.886 22 C -0.136 4.136 23 C -0.109 4.109 24 C 0.031 3.969 25 N -0.239 5.239 26 C -0.005 4.005 27 N -0.235 5.235 28 C -0.012 4.012 29 C -0.174 4.174 30 C -0.104 4.104 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.093 0.907 35 H 0.056 0.944 36 H 0.095 0.905 37 H 0.061 0.939 38 H 0.079 0.921 39 H 0.087 0.913 40 H 0.041 0.959 41 H 0.050 0.950 42 H 0.220 0.780 43 H 0.064 0.936 44 H 0.237 0.763 45 H 0.105 0.895 46 H 0.094 0.906 47 H 0.107 0.893 48 H 0.110 0.890 49 H 0.209 0.791 50 H 0.191 0.809 51 H 0.114 0.886 52 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -11.089 -0.599 -13.501 17.481 hybrid contribution 0.664 -0.568 1.392 1.644 sum -10.424 -1.167 -12.108 16.020 Atomic orbital electron populations 1.21876 0.96503 1.00884 1.01140 1.21131 0.94050 0.97239 0.98569 1.21829 1.03101 0.94951 0.99605 1.22017 0.95225 1.00508 0.98366 1.21362 0.93792 0.95658 0.86074 0.89135 1.20968 0.87005 0.97278 0.93223 1.42331 1.01435 1.76068 1.17671 1.19251 0.90404 1.33312 0.94294 0.91180 1.24703 0.96522 1.02001 0.97379 1.69655 1.08523 1.53697 1.26003 0.86159 0.79987 0.78465 0.81800 1.20594 1.21857 1.21878 1.46000 1.69279 1.13271 1.07286 1.20279 0.76797 0.88578 0.83893 1.90683 1.50025 1.15990 1.84374 1.21350 0.98225 0.98659 0.94608 0.88572 1.21410 1.04316 0.96799 0.91045 1.20451 0.94839 0.95591 1.00015 1.21352 0.94505 0.92988 0.88019 1.68363 1.12165 1.08902 1.34455 1.24847 0.89041 0.91720 0.94925 1.68439 1.29818 1.25439 0.99851 1.23448 0.90572 0.89055 0.98164 1.21154 0.99164 1.00176 0.96859 1.20325 0.95370 1.00588 0.94162 0.93159 0.93261 0.93376 0.90679 0.94385 0.90484 0.93891 0.92057 0.91256 0.95901 0.95034 0.78015 0.93557 0.76298 0.89504 0.90585 0.89264 0.88963 0.79068 0.80945 0.88580 0.88871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.19 37.16 0.34 -1.23 16 2 C -0.09 -1.14 2.38 -90.62 -0.22 -1.36 16 3 C -0.14 -1.85 8.04 37.16 0.30 -1.55 16 4 C -0.12 -1.55 4.36 -26.73 -0.12 -1.66 16 5 C 0.14 2.04 2.33 -67.94 -0.16 1.88 16 6 H 0.09 1.56 5.92 -51.93 -0.31 1.26 16 7 C 0.14 2.59 5.82 -4.04 -0.02 2.57 16 8 N -0.73 -16.82 5.43 -59.91 -0.33 -17.15 16 9 C -0.24 -6.33 9.99 -15.06 -0.15 -6.48 16 10 H 0.07 1.81 7.83 -52.48 -0.41 1.40 16 11 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 12 N -0.93 -26.41 13.06 55.49 0.72 -25.68 16 13 Si 0.90 21.53 29.55 -169.99 -5.02 16.51 16 14 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 15 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 16 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 17 N -0.71 -9.66 4.38 -53.81 -0.24 -9.90 16 18 C 0.52 6.93 5.68 -10.99 -0.06 6.87 16 19 O -0.53 -8.29 10.81 5.56 0.06 -8.23 16 20 C -0.11 -1.15 2.55 -91.69 -0.23 -1.39 16 21 H 0.10 0.89 8.10 -51.93 -0.42 0.47 16 22 C -0.10 -1.00 4.70 -26.67 -0.13 -1.12 16 23 C -0.07 -0.68 5.96 -28.10 -0.17 -0.84 16 24 C 0.18 2.07 6.62 -82.43 -0.55 1.53 16 25 N -0.52 -6.53 10.32 -11.00 -0.11 -6.64 16 26 C 0.28 3.34 12.29 -92.31 -1.13 2.20 16 27 N -0.52 -6.89 10.44 -14.54 -0.15 -7.04 16 28 C 0.15 1.96 10.94 -17.11 -0.19 1.78 16 29 C -0.17 -2.04 5.73 -104.68 -0.60 -2.64 16 30 C -0.07 -0.78 4.89 -28.14 -0.14 -0.91 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.07 1.02 5.19 -51.93 -0.27 0.75 16 35 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.08 1.20 4.76 -51.93 -0.25 0.95 16 37 H 0.04 0.56 8.14 -51.92 -0.42 0.14 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.39 9.38 7.33 -40.82 -0.30 9.08 16 43 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 44 H 0.40 5.29 8.29 -40.82 -0.34 4.95 16 45 H 0.09 0.88 7.82 -51.93 -0.41 0.47 16 46 H 0.08 0.88 8.10 -51.93 -0.42 0.46 16 47 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 48 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 49 H 0.19 1.61 8.06 -52.48 -0.42 1.19 16 50 H 0.17 2.02 8.06 -52.48 -0.42 1.59 16 51 H 0.10 1.32 8.11 -51.93 -0.42 0.90 16 52 H 0.09 1.09 7.88 -51.93 -0.41 0.68 16 LS Contribution 405.62 15.07 6.11 6.11 Total: -1.00 -30.34 405.62 -10.85 -41.19 By element: Atomic # 1 Polarization: 22.13 SS G_CDS: -8.58 Total: 13.55 kcal Atomic # 6 Polarization: 0.59 SS G_CDS: -3.31 Total: -2.72 kcal Atomic # 7 Polarization: -66.31 SS G_CDS: -0.10 Total: -66.41 kcal Atomic # 8 Polarization: -8.29 SS G_CDS: 0.06 Total: -8.23 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -30.34 -10.85 -41.19 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667092663.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.849 kcal (2) G-P(sol) polarization free energy of solvation -30.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds