Wall clock time and date at job start Wed Apr 1 2020 03:53:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46891 * 2 1 4 4 C 1.53000 * 109.47268 * 119.99884 * 2 1 3 5 5 C 1.52994 * 109.47356 * 175.00333 * 4 2 1 6 6 H 1.09000 * 109.47017 * 54.99628 * 5 4 2 7 7 C 1.52997 * 109.47404 * 174.99986 * 5 4 2 8 8 N 1.46505 * 109.47212 * 174.99693 * 7 5 4 9 9 C 1.36936 * 119.99992 * 179.97438 * 8 7 5 10 10 H 1.08006 * 119.99834 * 0.02562 * 9 8 7 11 11 C 1.38801 * 120.00093 * 180.02562 * 9 8 7 12 12 N 1.31619 * 120.00176 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 120.00265 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.46968 * 0.02562 * 13 11 9 15 15 H 1.48497 * 109.47299 * 119.99957 * 13 11 9 16 16 H 1.48495 * 109.47075 * 240.00117 * 13 11 9 17 17 N 1.46500 * 109.46849 * 295.00050 * 5 4 2 18 18 C 1.34779 * 120.00196 * 84.99779 * 17 5 4 19 19 O 1.21277 * 119.99823 * 0.02562 * 18 17 5 20 20 C 1.50698 * 119.99934 * 180.02562 * 18 17 5 21 21 H 1.08990 * 109.63623 * 59.59851 * 20 18 17 22 22 C 1.53314 * 109.63372 * 180.02562 * 20 18 17 23 23 C 1.52809 * 108.51752 * 189.48157 * 22 20 18 24 24 C 1.50446 * 110.45305 * 308.96590 * 23 22 20 25 25 N 1.32893 * 118.53922 * 197.67122 * 24 23 22 26 26 C 1.31597 * 121.06142 * 180.22399 * 25 24 23 27 27 N 1.31815 * 121.67805 * 0.03086 * 26 25 24 28 28 C 1.32192 * 120.63354 * 359.88571 * 27 26 25 29 29 C 1.37771 * 122.57818 * 17.71548 * 24 23 22 30 30 C 1.50343 * 122.80049 * 359.36210 * 29 24 23 31 31 H 1.09003 * 109.47377 * 300.00047 * 1 2 3 32 32 H 1.09005 * 109.47252 * 59.99825 * 1 2 3 33 33 H 1.08996 * 109.46698 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.46933 * 240.00251 * 2 1 3 35 35 H 1.08993 * 109.47222 * 59.99801 * 3 2 1 36 36 H 1.08997 * 109.47141 * 180.02562 * 3 2 1 37 37 H 1.09009 * 109.47128 * 299.99670 * 3 2 1 38 38 H 1.08996 * 109.46705 * 54.99807 * 4 2 1 39 39 H 1.09004 * 109.46936 * 295.00284 * 4 2 1 40 40 H 1.09002 * 109.47153 * 54.99686 * 7 5 4 41 41 H 1.09001 * 109.46832 * 294.99876 * 7 5 4 42 42 H 0.96996 * 119.99606 * 0.02562 * 8 7 5 43 43 H 0.97001 * 120.00803 * 179.97438 * 12 11 9 44 44 H 0.96998 * 120.00051 * 264.99732 * 17 5 4 45 45 H 1.08998 * 109.62849 * 309.18725 * 22 20 18 46 46 H 1.08998 * 109.63451 * 69.77121 * 22 20 18 47 47 H 1.09000 * 109.31103 * 69.26786 * 23 22 20 48 48 H 1.08999 * 109.30643 * 188.66714 * 23 22 20 49 49 H 1.08007 * 119.16530 * 180.02562 * 26 25 24 50 50 H 1.08007 * 120.35989 * 179.97438 * 28 27 26 51 51 H 1.09000 * 109.30151 * 257.27921 * 30 29 24 52 52 H 1.09000 * 109.31499 * 137.87780 * 30 29 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5648 -0.8309 1.1880 6 1 3.9953 0.1613 1.0527 7 6 4.0852 -1.4393 2.4919 8 7 5.5305 -1.6549 2.3875 9 6 6.2202 -2.1936 3.4407 10 1 5.6986 -2.4599 4.3482 11 6 7.5896 -2.3974 3.3421 12 7 8.2254 -2.0725 2.2364 13 14 8.5304 -3.1329 4.7786 14 1 7.5916 -3.4093 5.8956 15 1 9.1764 -4.3997 4.3506 16 1 9.5709 -2.1750 5.2313 17 7 3.9480 -1.6871 0.0627 18 6 4.0651 -1.1629 -1.1735 19 8 3.8539 0.0176 -1.3541 20 6 4.4587 -2.0438 -2.3312 21 1 3.7270 -2.8430 -2.4486 22 6 4.5211 -1.2090 -3.6157 23 6 4.6863 -2.1569 -4.8028 24 6 5.8267 -3.1080 -4.5615 25 7 6.3453 -3.7541 -5.6006 26 6 7.3408 -4.6007 -5.4457 27 7 7.8643 -4.8444 -4.2607 28 6 7.4008 -4.2371 -3.1818 29 6 6.3514 -3.3342 -3.3079 30 6 5.8415 -2.6419 -2.0745 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3632 -1.0276 0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.6766 1.9563 0.8899 36 1 3.1299 1.4426 -0.0005 37 1 1.6766 1.9564 -0.8901 38 1 1.6054 -1.7197 1.2951 39 1 1.7516 -0.1583 2.1370 40 1 3.5877 -2.3922 2.6722 41 1 3.8780 -0.7592 3.3181 42 1 5.9989 -1.4154 1.5726 43 1 9.1825 -2.2145 2.1675 44 1 4.1173 -2.6312 0.2072 45 1 3.5985 -0.6396 -3.7274 46 1 5.3714 -0.5286 -3.5693 47 1 3.7664 -2.7250 -4.9412 48 1 4.8862 -1.5756 -5.7030 49 1 7.7391 -5.1089 -6.3115 50 1 7.8328 -4.4404 -2.2130 51 1 6.5325 -1.8461 -1.7964 52 1 5.7773 -3.3611 -1.2580 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667092663.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:36 Heat of formation + Delta-G solvation = -21.342890 kcal Electronic energy + Delta-G solvation = -31665.702040 eV Core-core repulsion = 27663.648425 eV Total energy + Delta-G solvation = -4002.053615 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.38918 -41.16815 -38.55050 -37.25829 -36.38759 -35.15583 -34.85696 -33.00794 -32.41561 -31.47594 -30.18859 -27.90246 -27.14161 -26.35836 -25.32535 -24.56502 -23.98231 -22.76787 -21.61595 -20.77978 -20.59468 -19.24498 -18.78005 -17.99670 -17.70128 -17.21853 -16.85314 -16.37950 -16.21778 -15.81796 -15.42296 -15.24842 -15.11866 -14.86522 -14.78199 -14.61193 -14.47286 -14.41947 -14.23883 -13.97696 -13.59541 -13.28049 -13.10709 -13.03477 -12.93372 -12.82055 -12.68972 -12.49383 -12.28214 -12.14296 -12.03416 -11.92636 -11.85524 -11.79778 -11.56028 -11.36449 -11.33000 -11.17491 -10.95555 -10.48005 -10.21975 -10.18938 -9.78220 -8.96022 -7.91583 -5.19431 -0.09237 0.01937 1.48687 1.50644 1.58897 1.78734 2.35517 2.57878 2.73446 3.03473 3.25935 3.42821 3.45338 3.53916 3.63863 3.71524 3.84404 3.99212 4.07321 4.14399 4.27891 4.29499 4.30636 4.37992 4.45071 4.47810 4.51329 4.57668 4.68903 4.72963 4.83912 4.85670 4.92547 4.94476 4.95675 4.98937 5.05197 5.10677 5.14932 5.15058 5.22183 5.29357 5.31302 5.44328 5.47461 5.54982 5.63268 5.70089 5.75734 5.97451 6.29689 6.74499 7.07709 7.38270 7.44048 8.11929 8.36675 9.30920 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.006419 B = 0.004515 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4360.925709 B = 6200.305556 C =10101.786706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.087 4.087 3 C -0.133 4.133 4 C -0.114 4.114 5 C 0.148 3.852 6 H 0.065 0.935 7 C 0.144 3.856 8 N -0.739 5.739 9 C -0.241 4.241 10 H 0.075 0.925 11 C -0.066 4.066 12 N -0.962 5.962 13 Si 0.963 3.037 14 H -0.268 1.268 15 H -0.294 1.294 16 H -0.300 1.300 17 N -0.706 5.706 18 C 0.517 3.483 19 O -0.555 6.555 20 C -0.097 4.097 21 H 0.121 0.879 22 C -0.090 4.090 23 C -0.064 4.064 24 C 0.173 3.827 25 N -0.534 5.534 26 C 0.280 3.720 27 N -0.541 5.541 28 C 0.143 3.857 29 C -0.175 4.175 30 C -0.056 4.056 31 H 0.055 0.945 32 H 0.052 0.948 33 H 0.057 0.943 34 H 0.065 0.935 35 H 0.044 0.956 36 H 0.050 0.950 37 H 0.042 0.958 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.037 0.963 41 H 0.030 0.970 42 H 0.377 0.623 43 H 0.249 0.751 44 H 0.406 0.594 45 H 0.093 0.907 46 H 0.057 0.943 47 H 0.111 0.889 48 H 0.101 0.899 49 H 0.222 0.778 50 H 0.174 0.826 51 H 0.070 0.930 52 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.368 -1.737 -13.141 18.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.106 4.106 3 C -0.191 4.191 4 C -0.153 4.153 5 C 0.042 3.958 6 H 0.083 0.917 7 C 0.017 3.983 8 N -0.383 5.383 9 C -0.372 4.372 10 H 0.093 0.907 11 C -0.259 4.259 12 N -0.612 5.612 13 Si 0.794 3.206 14 H -0.192 1.192 15 H -0.221 1.221 16 H -0.227 1.227 17 N -0.357 5.357 18 C 0.304 3.696 19 O -0.434 6.434 20 C -0.118 4.118 21 H 0.139 0.861 22 C -0.128 4.128 23 C -0.101 4.101 24 C 0.029 3.971 25 N -0.248 5.248 26 C -0.008 4.008 27 N -0.255 5.255 28 C -0.023 4.023 29 C -0.179 4.179 30 C -0.094 4.094 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.061 0.939 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.055 0.945 41 H 0.048 0.952 42 H 0.209 0.791 43 H 0.058 0.942 44 H 0.241 0.759 45 H 0.111 0.889 46 H 0.076 0.924 47 H 0.129 0.871 48 H 0.120 0.880 49 H 0.239 0.761 50 H 0.191 0.809 51 H 0.088 0.912 52 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -13.157 -1.438 -13.877 19.177 hybrid contribution 1.271 -0.265 1.514 1.995 sum -11.886 -1.703 -12.363 17.235 Atomic orbital electron populations 1.21818 0.94658 1.01743 1.01674 1.21067 0.95478 0.96179 0.97871 1.21763 1.01366 0.95989 0.99935 1.21952 0.92980 1.01489 0.98855 1.21115 0.95354 0.94203 0.85088 0.91664 1.21105 0.84397 0.97900 0.94897 1.42475 1.03410 1.75756 1.16611 1.19603 0.90753 1.31937 0.94948 0.90742 1.25386 0.97560 1.03416 0.99542 1.69794 1.08245 1.55482 1.27711 0.85222 0.78593 0.77210 0.79604 1.19228 1.22117 1.22743 1.45964 1.69350 1.13243 1.07156 1.20686 0.76100 0.88564 0.84219 1.90684 1.50942 1.17051 1.84695 1.21322 0.97976 0.98824 0.93668 0.86063 1.21335 1.03809 0.96627 0.91079 1.20475 0.94798 0.95131 0.99703 1.21745 0.94780 0.92887 0.87714 1.68451 1.12572 1.09331 1.34483 1.25478 0.88588 0.91331 0.95367 1.68473 1.30498 1.26130 1.00399 1.23576 0.90930 0.89417 0.98414 1.21113 0.99345 1.00347 0.97084 1.20162 0.95421 0.99667 0.94194 0.92564 0.92844 0.92349 0.91638 0.93681 0.93079 0.93874 0.90657 0.90647 0.94541 0.95187 0.79094 0.94221 0.75879 0.88877 0.92429 0.87124 0.88039 0.76140 0.80887 0.91176 0.89086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 9.19 71.98 0.66 -1.99 16 2 C -0.09 -2.04 2.38 -10.79 -0.03 -2.06 16 3 C -0.13 -3.49 8.04 71.98 0.58 -2.91 16 4 C -0.11 -2.68 4.36 30.59 0.13 -2.55 16 5 C 0.15 4.37 2.33 44.99 0.10 4.48 16 6 H 0.07 2.31 5.92 -2.39 -0.01 2.29 16 7 C 0.14 5.10 5.82 86.38 0.50 5.60 16 8 N -0.74 -34.21 5.43 -343.45 -1.87 -36.08 16 9 C -0.24 -12.56 9.99 84.03 0.84 -11.72 16 10 H 0.07 3.76 7.83 -2.91 -0.02 3.74 16 11 C -0.07 -3.60 5.50 84.86 0.47 -3.13 16 12 N -0.96 -55.67 13.06 21.65 0.28 -55.39 16 13 Si 0.96 44.44 29.55 68.60 2.03 46.47 16 14 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 15 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 16 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 17 N -0.71 -19.03 4.38 -442.55 -1.94 -20.97 16 18 C 0.52 13.71 5.68 87.66 0.50 14.21 16 19 O -0.55 -17.37 10.81 -3.02 -0.03 -17.40 16 20 C -0.10 -2.00 2.55 -11.49 -0.03 -2.03 16 21 H 0.12 1.95 8.10 -2.39 -0.02 1.94 16 22 C -0.09 -1.75 4.70 30.64 0.14 -1.61 16 23 C -0.06 -1.08 5.96 29.70 0.18 -0.90 16 24 C 0.17 3.88 6.62 42.21 0.28 4.16 16 25 N -0.53 -12.51 10.32 -188.71 -1.95 -14.46 16 26 C 0.28 6.27 12.29 180.94 2.22 8.50 16 27 N -0.54 -14.10 10.44 -199.92 -2.09 -16.19 16 28 C 0.14 3.68 10.94 84.82 0.93 4.61 16 29 C -0.17 -4.19 5.73 -19.90 -0.11 -4.30 16 30 C -0.06 -1.33 4.89 29.68 0.15 -1.19 16 31 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 33 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.07 1.68 5.19 -2.39 -0.01 1.66 16 35 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.05 1.62 4.76 -2.39 -0.01 1.60 16 37 H 0.04 1.09 8.14 -2.38 -0.02 1.08 16 38 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.38 18.72 7.33 -92.71 -0.68 18.04 16 43 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 44 H 0.41 10.41 8.29 -92.71 -0.77 9.64 16 45 H 0.09 1.74 7.82 -2.39 -0.02 1.72 16 46 H 0.06 1.34 8.10 -2.39 -0.02 1.32 16 47 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 48 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 49 H 0.22 3.30 8.06 -2.91 -0.02 3.28 16 50 H 0.17 4.24 8.06 -2.91 -0.02 4.22 16 51 H 0.07 2.05 8.11 -2.39 -0.02 2.03 16 52 H 0.09 2.19 7.88 -2.39 -0.02 2.17 16 Total: -1.00 -64.91 405.62 1.43 -63.47 By element: Atomic # 1 Polarization: 43.91 SS G_CDS: -0.52 Total: 43.40 kcal Atomic # 6 Polarization: -0.36 SS G_CDS: 7.51 Total: 7.15 kcal Atomic # 7 Polarization: -135.52 SS G_CDS: -7.56 Total: -143.08 kcal Atomic # 8 Polarization: -17.37 SS G_CDS: -0.03 Total: -17.40 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Total: -64.91 1.43 -63.47 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667092663.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.130 kcal (2) G-P(sol) polarization free energy of solvation -64.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds