Wall clock time and date at job start Wed Apr 1 2020 03:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47105 * 2 1 4 4 C 1.52999 * 109.47200 * 239.99785 * 2 1 3 5 5 C 1.52999 * 109.47527 * 294.99624 * 4 2 1 6 6 H 1.09003 * 109.46518 * 55.00343 * 5 4 2 7 7 C 1.50700 * 109.47316 * 174.99713 * 5 4 2 8 8 O 1.21273 * 119.99813 * 0.02562 * 7 5 4 9 9 N 1.34775 * 120.00001 * 180.02562 * 7 5 4 10 10 C 1.46494 * 120.00089 * 180.02562 * 9 7 5 11 11 C 1.50700 * 109.47093 * 179.97438 * 10 9 7 12 12 C 1.29456 * 117.69264 * 95.00294 * 11 10 9 13 13 C 1.50318 * 123.65313 * 180.85921 * 12 11 10 14 14 N 1.47013 * 109.16397 * 349.02205 * 13 12 11 15 15 C 1.36936 * 121.37293 * 222.96974 * 14 13 12 16 16 H 1.07997 * 120.00318 * 155.97352 * 15 14 13 17 17 C 1.38818 * 120.00064 * 335.97708 * 15 14 13 18 18 N 1.31620 * 119.99795 * 344.49681 * 17 15 14 19 19 Si 1.86798 * 119.99871 * 164.49778 * 17 15 14 20 20 H 1.48500 * 109.47346 * 94.45524 * 19 17 15 21 21 H 1.48503 * 109.46824 * 214.45169 * 19 17 15 22 22 H 1.48498 * 109.47133 * 334.45062 * 19 17 15 23 23 C 1.47329 * 117.25101 * 42.94644 * 14 13 12 24 24 C 1.49967 * 117.69785 * 274.74228 * 11 10 9 25 25 N 1.46498 * 109.47285 * 295.00539 * 5 4 2 26 26 C 1.36886 * 126.40129 * 119.70698 * 25 5 4 27 27 C 1.34661 * 106.81718 * 179.84109 * 26 25 5 28 28 N 1.34136 * 108.02380 * 0.42687 * 27 26 25 29 29 C 1.30505 * 109.25307 * 359.72625 * 28 27 26 30 30 H 1.09003 * 109.47545 * 299.99674 * 1 2 3 31 31 H 1.08998 * 109.47127 * 60.00632 * 1 2 3 32 32 H 1.09006 * 109.46823 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.47250 * 120.00043 * 2 1 3 34 34 H 1.08999 * 109.47347 * 59.99617 * 3 2 1 35 35 H 1.09000 * 109.47453 * 180.02562 * 3 2 1 36 36 H 1.09005 * 109.47101 * 300.00134 * 3 2 1 37 37 H 1.08994 * 109.47118 * 55.00289 * 4 2 1 38 38 H 1.09000 * 109.47201 * 174.99643 * 4 2 1 39 39 H 0.97004 * 119.99682 * 0.02562 * 9 7 5 40 40 H 1.08993 * 109.47087 * 300.00356 * 10 9 7 41 41 H 1.09003 * 109.46949 * 60.00526 * 10 9 7 42 42 H 1.07998 * 118.17332 * 0.87692 * 12 11 10 43 43 H 1.08999 * 109.52418 * 108.92766 * 13 12 11 44 44 H 1.09001 * 109.52429 * 229.11415 * 13 12 11 45 45 H 0.97002 * 119.99334 * 180.02562 * 18 17 15 46 46 H 1.09003 * 109.77849 * 57.81061 * 23 14 13 47 47 H 1.08999 * 109.78186 * 178.61817 * 23 14 13 48 48 H 1.09001 * 109.31244 * 281.28810 * 24 11 10 49 49 H 1.09001 * 109.31678 * 40.71558 * 24 11 10 50 50 H 1.07998 * 126.58582 * 359.97438 * 26 25 5 51 51 H 1.08000 * 125.99034 * 180.12162 * 27 26 25 52 52 H 1.07996 * 125.64719 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6353 -2.1955 -1.1879 6 1 0.5563 -2.2707 -1.0527 7 6 2.0294 -2.8785 -2.4722 8 8 2.5801 -2.2482 -3.3498 9 7 1.7699 -4.1896 -2.6454 10 6 2.1534 -4.8536 -3.8936 11 6 1.7548 -6.3057 -3.8332 12 6 0.6164 -6.6390 -4.3517 13 6 0.0791 -8.0429 -4.3492 14 7 1.1413 -8.9654 -3.9227 15 6 1.3456 -10.1606 -4.5591 16 1 2.3143 -10.6360 -4.5172 17 6 0.3074 -10.7610 -5.2582 18 7 -0.9321 -10.3617 -5.0672 19 14 0.6697 -12.1356 -6.4700 20 1 0.5145 -13.4474 -5.7915 21 1 -0.2783 -12.0529 -7.6102 22 1 2.0606 -11.9993 -6.9719 23 6 1.9773 -8.5508 -2.7826 24 6 2.7074 -7.2636 -3.1821 25 7 2.3148 -2.8421 -0.0625 26 6 1.7154 -3.4483 1.0085 27 6 2.7036 -3.9098 1.7982 28 7 3.8747 -3.5858 1.2300 29 6 3.6495 -2.9461 0.1150 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5139 0.8900 34 1 1.6766 1.9564 0.8899 35 1 3.1299 1.4426 -0.0005 36 1 1.6766 1.9563 -0.8900 37 1 1.6054 -0.2618 -2.1369 38 1 3.1263 -0.6443 -1.2951 39 1 1.3290 -4.6935 -1.9435 40 1 1.6486 -4.3723 -4.7311 41 1 3.2325 -4.7788 -4.0282 42 1 0.0196 -5.8655 -4.8119 43 1 -0.7610 -8.1102 -3.6580 44 1 -0.2521 -8.3080 -5.3532 45 1 -1.6575 -10.7815 -5.5555 46 1 1.3483 -8.3673 -1.9114 47 1 2.7045 -9.3303 -2.5556 48 1 3.5111 -7.5021 -3.8787 49 1 3.1317 -6.8005 -2.2913 50 1 0.6539 -3.5408 1.1848 51 1 2.5758 -4.4427 2.7289 52 1 4.4053 -2.5629 -0.5545 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001677574131.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:50 Heat of formation + Delta-G solvation = 55.637360 kcal Electronic energy + Delta-G solvation = -30935.160664 eV Core-core repulsion = 26936.445163 eV Total energy + Delta-G solvation = -3998.715501 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -42.45560 -40.01878 -37.99490 -37.14106 -35.13277 -34.01999 -32.89999 -30.96523 -30.11287 -29.78248 -29.15890 -27.61916 -27.24953 -25.19147 -23.88775 -22.81186 -21.96172 -21.52144 -21.16504 -20.69542 -20.04654 -18.34212 -17.67630 -17.08427 -16.53110 -15.80455 -15.70723 -15.39954 -14.93282 -14.86627 -14.66672 -14.37030 -14.14971 -14.02928 -13.89304 -13.71183 -13.56896 -13.46694 -13.13478 -12.91128 -12.69790 -12.57507 -12.33937 -12.17549 -12.12262 -11.63886 -11.46220 -11.34906 -11.20590 -11.07183 -10.96953 -10.77093 -10.62185 -10.43487 -10.36380 -10.13652 -9.88043 -9.73961 -9.62630 -9.20332 -8.74305 -8.69625 -8.15119 -6.80483 -5.85319 -3.23879 1.78640 1.90391 2.41557 2.80311 3.03679 3.20142 3.34599 3.41892 3.44445 4.06772 4.19471 4.37780 4.45152 4.51627 4.54493 4.56584 4.68013 4.79323 5.02856 5.18872 5.21568 5.24215 5.25208 5.30516 5.33753 5.41530 5.45822 5.49905 5.50628 5.53545 5.69938 5.73893 5.79504 5.84247 5.93291 5.99812 6.01791 6.09225 6.22367 6.27206 6.43049 6.53938 6.67476 6.80852 6.90378 7.06919 7.16622 7.20759 7.31435 7.65632 7.75611 7.87650 7.90600 8.32376 9.13989 9.76603 10.34332 11.25334 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.018793 B = 0.002290 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.580285 B =12221.833711 C =12767.090891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.098 4.098 3 C -0.145 4.145 4 C -0.108 4.108 5 C 0.117 3.883 6 H 0.124 0.876 7 C 0.502 3.498 8 O -0.529 6.529 9 N -0.707 5.707 10 C 0.156 3.844 11 C -0.167 4.167 12 C -0.122 4.122 13 C 0.194 3.806 14 N -0.595 5.595 15 C -0.246 4.246 16 H 0.069 0.931 17 C -0.002 4.002 18 N -0.910 5.910 19 Si 0.905 3.095 20 H -0.287 1.287 21 H -0.289 1.289 22 H -0.279 1.279 23 C 0.145 3.855 24 C -0.089 4.089 25 N -0.449 5.449 26 C -0.056 4.056 27 C -0.025 4.025 28 N -0.490 5.490 29 C 0.192 3.808 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.052 0.948 33 H 0.073 0.927 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.092 0.908 38 H 0.079 0.921 39 H 0.403 0.597 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.094 0.906 43 H 0.042 0.958 44 H 0.094 0.906 45 H 0.254 0.746 46 H 0.023 0.977 47 H 0.057 0.943 48 H 0.065 0.935 49 H 0.052 0.948 50 H 0.174 0.826 51 H 0.169 0.831 52 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.969 21.526 11.160 24.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.117 4.117 3 C -0.202 4.202 4 C -0.147 4.147 5 C 0.010 3.990 6 H 0.142 0.858 7 C 0.284 3.716 8 O -0.404 6.404 9 N -0.357 5.357 10 C 0.034 3.966 11 C -0.168 4.168 12 C -0.143 4.143 13 C 0.069 3.931 14 N -0.318 5.318 15 C -0.375 4.375 16 H 0.087 0.913 17 C -0.199 4.199 18 N -0.556 5.556 19 Si 0.735 3.265 20 H -0.214 1.214 21 H -0.215 1.215 22 H -0.205 1.205 23 C 0.018 3.982 24 C -0.128 4.128 25 N -0.134 5.134 26 C -0.188 4.188 27 C -0.172 4.172 28 N -0.208 5.208 29 C -0.091 4.091 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.091 0.909 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.111 0.889 38 H 0.098 0.902 39 H 0.237 0.763 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.112 0.888 43 H 0.059 0.941 44 H 0.112 0.888 45 H 0.064 0.936 46 H 0.041 0.959 47 H 0.076 0.924 48 H 0.083 0.917 49 H 0.070 0.930 50 H 0.192 0.808 51 H 0.187 0.813 52 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 2.937 21.749 10.605 24.375 hybrid contribution -1.053 -0.786 -0.729 1.503 sum 1.885 20.963 9.876 23.250 Atomic orbital electron populations 1.21925 0.94999 1.01630 1.02280 1.21133 0.96021 0.96673 0.97844 1.21792 1.01158 0.95342 1.01937 1.21837 1.02969 0.90276 0.99584 1.21767 0.99797 0.94254 0.83175 0.85815 1.20479 0.79838 0.82723 0.88517 1.90746 1.41477 1.64525 1.43680 1.46234 1.60200 1.09196 1.20091 1.20539 1.00272 0.90681 0.85092 1.20480 0.97885 0.92902 1.05522 1.23307 0.95240 1.00696 0.95044 1.19763 0.89706 0.82377 1.01271 1.44128 1.36764 1.18093 1.32821 1.19186 0.94937 0.97032 1.26358 0.91333 1.24992 0.94894 0.98482 1.01563 1.70006 0.97953 1.44429 1.43164 0.86236 0.77544 0.81818 0.80950 1.21450 1.21549 1.20451 1.20976 0.93622 0.93523 0.90066 1.20776 0.97205 0.96317 0.98540 1.45455 1.07565 1.42862 1.17552 1.22764 1.00108 1.05179 0.90759 1.22311 0.87883 1.05267 1.01742 1.70357 1.28017 1.15199 1.07212 1.24919 0.83780 1.02656 0.97714 0.92325 0.92281 0.92873 0.90856 0.92508 0.92534 0.92452 0.88911 0.90191 0.76251 0.91348 0.91349 0.88819 0.94077 0.88806 0.93599 0.95911 0.92398 0.91686 0.92979 0.80845 0.81341 0.78503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 8.95 37.15 0.33 -0.50 16 2 C -0.10 -0.63 2.86 -90.62 -0.26 -0.89 16 3 C -0.14 -0.87 9.19 37.16 0.34 -0.53 16 4 C -0.11 -0.81 3.49 -26.73 -0.09 -0.91 16 5 C 0.12 0.95 2.64 -69.08 -0.18 0.76 16 6 H 0.12 0.78 6.29 -51.93 -0.33 0.46 16 7 C 0.50 5.70 7.06 -10.99 -0.08 5.62 16 8 O -0.53 -7.64 15.92 5.56 0.09 -7.55 16 9 N -0.71 -8.36 5.55 -61.48 -0.34 -8.70 16 10 C 0.16 2.19 5.66 -5.20 -0.03 2.16 16 11 C -0.17 -2.75 5.22 -100.99 -0.53 -3.27 16 12 C -0.12 -2.21 9.47 -35.78 -0.34 -2.55 16 13 C 0.19 4.44 5.23 -5.10 -0.03 4.41 16 14 N -0.59 -14.55 3.01 -173.57 -0.52 -15.07 16 15 C -0.25 -6.64 9.71 -15.06 -0.15 -6.78 16 16 H 0.07 1.82 7.88 -52.49 -0.41 1.41 16 17 C 0.00 -0.04 5.01 -17.43 -0.09 -0.13 16 18 N -0.91 -25.75 11.08 55.49 0.61 -25.13 16 19 Si 0.90 21.47 29.58 -169.99 -5.03 16.44 16 20 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 C 0.14 2.94 6.59 -3.44 -0.02 2.92 16 24 C -0.09 -1.54 5.95 -28.09 -0.17 -1.70 16 25 N -0.45 -3.93 1.98 -112.70 -0.22 -4.15 16 26 C -0.06 -0.47 11.54 -16.56 -0.19 -0.67 16 27 C -0.02 -0.25 11.87 -17.81 -0.21 -0.46 16 28 N -0.49 -6.14 11.25 -14.66 -0.16 -6.30 16 29 C 0.19 2.05 11.59 -90.37 -1.05 1.01 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.05 0.27 6.46 -51.93 -0.34 -0.06 16 33 H 0.07 0.56 7.62 -51.93 -0.40 0.17 16 34 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 35 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.09 0.73 7.95 -51.93 -0.41 0.32 16 38 H 0.08 0.67 7.80 -51.93 -0.41 0.26 16 39 H 0.40 4.48 8.46 -40.82 -0.35 4.13 16 40 H 0.07 0.98 7.78 -51.93 -0.40 0.57 16 41 H 0.07 1.00 8.11 -51.93 -0.42 0.58 16 42 H 0.09 1.51 7.73 -52.49 -0.41 1.10 16 43 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.09 2.41 6.41 -51.93 -0.33 2.08 16 45 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 46 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 47 H 0.06 1.16 7.96 -51.93 -0.41 0.75 16 48 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 49 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 50 H 0.17 0.98 8.06 -52.49 -0.42 0.56 16 51 H 0.17 1.42 8.06 -52.49 -0.42 0.99 16 52 H 0.20 1.87 8.06 -52.49 -0.42 1.45 16 LS Contribution 417.93 15.07 6.30 6.30 Total: -1.00 -31.28 417.93 -10.83 -42.12 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -8.82 Total: 3.57 kcal Atomic # 6 Polarization: 1.22 SS G_CDS: -2.73 Total: -1.52 kcal Atomic # 7 Polarization: -58.73 SS G_CDS: -0.64 Total: -59.36 kcal Atomic # 8 Polarization: -7.64 SS G_CDS: 0.09 Total: -7.55 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.03 Total: 16.44 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -31.28 -10.83 -42.12 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677574131.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.754 kcal (2) G-P(sol) polarization free energy of solvation -31.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds