Wall clock time and date at job start Wed Apr 1 2020 05:40:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47274 * 2 1 4 4 C 1.52995 * 109.47197 * 240.00313 * 2 1 3 5 5 N 1.46500 * 109.47425 * 59.99743 * 4 2 1 6 6 C 1.34777 * 120.00269 * 180.02562 * 5 4 2 7 7 O 1.21595 * 119.99824 * 359.97438 * 6 5 4 8 8 N 1.34768 * 119.99935 * 179.97438 * 6 5 4 9 9 C 1.46504 * 119.99955 * 179.97438 * 8 6 5 10 10 C 1.53039 * 109.46138 * 275.02893 * 9 8 6 11 11 C 1.53197 * 109.31548 * 178.59771 * 10 9 8 12 12 N 1.46927 * 108.75772 * 54.65662 * 11 10 9 13 13 C 1.36943 * 120.62666 * 126.41041 * 12 11 10 14 14 H 1.07994 * 120.00177 * 331.82060 * 13 12 11 15 15 C 1.38814 * 119.99798 * 151.82558 * 13 12 11 16 16 N 1.31616 * 119.99927 * 343.06624 * 15 13 12 17 17 Si 1.86798 * 119.99995 * 163.07458 * 15 13 12 18 18 H 1.48494 * 109.47676 * 89.99367 * 17 15 13 19 19 H 1.48504 * 109.47267 * 209.99734 * 17 15 13 20 20 H 1.48504 * 109.46902 * 329.99213 * 17 15 13 21 21 C 1.46929 * 118.74133 * 306.38252 * 12 11 10 22 22 C 1.53041 * 109.46022 * 154.97645 * 9 8 6 23 23 C 1.50699 * 109.47252 * 120.00033 * 2 1 3 24 24 C 1.38675 * 120.41856 * 299.72294 * 23 2 1 25 25 C 1.38635 * 118.41809 * 179.78444 * 24 23 2 26 26 C 1.38222 * 119.16234 * 0.50605 * 25 24 23 27 27 N 1.31854 * 120.76376 * 359.73668 * 26 25 24 28 28 C 1.31886 * 121.72608 * 359.97438 * 27 26 25 29 29 H 1.08998 * 109.46930 * 59.99693 * 1 2 3 30 30 H 1.09005 * 109.46840 * 299.99913 * 1 2 3 31 31 H 1.08995 * 109.46809 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47116 * 60.00256 * 3 2 1 33 33 H 1.08999 * 109.47497 * 179.97438 * 3 2 1 34 34 H 1.08998 * 109.47392 * 300.00024 * 3 2 1 35 35 H 1.08997 * 109.47640 * 180.02562 * 4 2 1 36 36 H 1.09004 * 109.46761 * 299.99706 * 4 2 1 37 37 H 0.96997 * 119.99474 * 0.02562 * 5 4 2 38 38 H 0.96997 * 120.00644 * 0.02562 * 8 6 5 39 39 H 1.08995 * 109.46253 * 35.00136 * 9 8 6 40 40 H 1.09001 * 109.49806 * 298.56485 * 10 9 8 41 41 H 1.09000 * 109.49676 * 58.66341 * 10 9 8 42 42 H 1.09000 * 109.59913 * 294.87393 * 11 10 9 43 43 H 1.08991 * 109.70335 * 174.50650 * 11 10 9 44 44 H 0.97007 * 119.99843 * 180.02562 * 16 15 13 45 45 H 1.08998 * 109.58865 * 293.82168 * 21 12 11 46 46 H 1.09007 * 109.69910 * 173.47070 * 21 12 11 47 47 H 1.09006 * 109.49666 * 301.33817 * 22 9 8 48 48 H 1.08997 * 109.50173 * 61.39978 * 22 9 8 49 49 H 1.07992 * 120.79209 * 0.02562 * 24 23 2 50 50 H 1.07997 * 120.41449 * 180.21915 * 25 24 23 51 51 H 1.08003 * 119.62022 * 179.74446 * 26 25 24 52 52 H 1.08005 * 119.61962 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 1.5517 -0.0306 -2.4454 6 6 1.8768 -0.4913 -3.6695 7 8 2.5760 -1.4799 -3.7811 8 7 1.4271 0.1437 -4.7699 9 6 1.7811 -0.3567 -6.1005 10 6 3.1439 0.2057 -6.5110 11 6 3.5266 -0.3473 -7.8874 12 7 2.4422 -0.0515 -8.8336 13 6 2.7012 0.5998 -10.0101 14 1 3.5342 1.2838 -10.0767 15 6 1.8928 0.3808 -11.1171 16 7 1.1022 -0.6708 -11.1570 17 14 1.9271 1.5783 -12.5503 18 1 2.9585 1.1498 -13.5290 19 1 0.5969 1.5990 -13.2101 20 1 2.2532 2.9384 -12.0511 21 6 1.0749 -0.4683 -8.4939 22 6 0.7199 0.0858 -7.1106 23 6 2.0324 -0.7104 1.2304 24 6 1.7074 -0.2408 2.4942 25 6 2.1881 -0.9290 3.5975 26 6 2.9785 -2.0461 3.4027 27 7 3.2714 -2.4611 2.1859 28 6 2.8271 -1.8348 1.1137 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.6767 1.9563 0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9564 -0.8899 35 1 3.1300 -0.7216 -1.2491 36 1 1.6767 -1.7489 -1.2492 37 1 0.9943 0.7582 -2.3563 38 1 0.8698 0.9326 -4.6809 39 1 1.8294 -1.4454 -6.0781 40 1 3.0894 1.2934 -6.5579 41 1 3.8951 -0.0901 -5.7786 42 1 3.6698 -1.4258 -7.8212 43 1 4.4484 0.1234 -8.2292 44 1 0.5376 -0.8240 -11.9307 45 1 1.0181 -1.5567 -8.4772 46 1 0.3769 -0.0774 -9.2343 47 1 -0.2545 -0.2954 -6.8050 48 1 0.6880 1.1745 -7.1514 49 1 1.0913 0.6377 2.6159 50 1 1.9519 -0.5937 4.5965 51 1 3.3604 -2.5854 4.2569 52 1 3.0877 -2.2047 0.1330 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001678701510.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:40:54 Heat of formation + Delta-G solvation = 18.962498 kcal Electronic energy + Delta-G solvation = -30263.422259 eV Core-core repulsion = 26263.116417 eV Total energy + Delta-G solvation = -4000.305842 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -41.03458 -39.91876 -37.99423 -37.07516 -34.34017 -33.83020 -32.49987 -31.92365 -30.58660 -30.06623 -29.31758 -27.75772 -26.99656 -24.92611 -23.95646 -23.46419 -22.24722 -21.90185 -20.62351 -19.87587 -19.43470 -18.29307 -17.56573 -16.95455 -16.57411 -15.90210 -15.60555 -15.53163 -14.87961 -14.68926 -14.53649 -14.47895 -14.00061 -13.92907 -13.74440 -13.62148 -13.52327 -13.50441 -13.00485 -12.87873 -12.62175 -12.60737 -12.30107 -12.21689 -11.65705 -11.59887 -11.42614 -11.20347 -11.09189 -10.82979 -10.69441 -10.47758 -10.24887 -10.17405 -10.02920 -10.00060 -9.74849 -9.72700 -9.51595 -9.36423 -9.16427 -8.57742 -8.41640 -6.66001 -5.78123 -3.19919 0.71091 0.88607 2.77518 3.37975 3.39127 3.42195 3.44943 3.47115 3.95638 4.08012 4.23095 4.42165 4.47701 4.50088 4.50768 4.56105 4.64684 4.77880 5.09698 5.13043 5.24367 5.29735 5.36155 5.37964 5.43177 5.46430 5.48035 5.53287 5.55911 5.63600 5.64808 5.77195 5.81279 5.85919 5.93118 6.11357 6.30169 6.32157 6.38739 6.40970 6.52347 6.60833 6.64180 6.83565 6.92460 7.02038 7.13082 7.34177 7.62129 7.63957 7.80762 8.16099 8.46316 8.77955 9.22481 9.85880 10.43165 11.30851 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.032464 B = 0.001757 C = 0.001729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.294983 B =15933.760901 C =16193.086373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.032 4.032 3 C -0.140 4.140 4 C 0.147 3.853 5 N -0.750 5.750 6 C 0.701 3.299 7 O -0.590 6.590 8 N -0.739 5.739 9 C 0.169 3.831 10 C -0.139 4.139 11 C 0.147 3.853 12 N -0.593 5.593 13 C -0.251 4.251 14 H 0.065 0.935 15 C 0.001 3.999 16 N -0.903 5.903 17 Si 0.902 3.098 18 H -0.287 1.287 19 H -0.290 1.290 20 H -0.280 1.280 21 C 0.175 3.825 22 C -0.146 4.146 23 C -0.118 4.118 24 C -0.069 4.069 25 C -0.172 4.172 26 C 0.092 3.908 27 N -0.480 5.480 28 C 0.099 3.901 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.393 0.607 38 H 0.390 0.610 39 H 0.081 0.919 40 H 0.056 0.944 41 H 0.054 0.946 42 H 0.020 0.980 43 H 0.055 0.945 44 H 0.254 0.746 45 H 0.021 0.979 46 H 0.091 0.909 47 H 0.053 0.947 48 H 0.058 0.942 49 H 0.133 0.867 50 H 0.134 0.866 51 H 0.154 0.846 52 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.133 4.383 29.991 30.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.033 4.033 3 C -0.197 4.197 4 C 0.022 3.978 5 N -0.407 5.407 6 C 0.401 3.599 7 O -0.467 6.467 8 N -0.392 5.392 9 C 0.065 3.935 10 C -0.179 4.179 11 C 0.020 3.980 12 N -0.315 5.315 13 C -0.381 4.381 14 H 0.083 0.917 15 C -0.197 4.197 16 N -0.548 5.548 17 Si 0.732 3.268 18 H -0.214 1.214 19 H -0.216 1.216 20 H -0.205 1.205 21 C 0.048 3.952 22 C -0.186 4.186 23 C -0.121 4.121 24 C -0.095 4.095 25 C -0.192 4.192 26 C -0.065 4.065 27 N -0.188 5.188 28 C -0.057 4.057 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.227 0.773 38 H 0.223 0.777 39 H 0.099 0.901 40 H 0.075 0.925 41 H 0.073 0.927 42 H 0.038 0.962 43 H 0.074 0.926 44 H 0.064 0.936 45 H 0.039 0.961 46 H 0.109 0.891 47 H 0.072 0.928 48 H 0.077 0.923 49 H 0.151 0.849 50 H 0.152 0.848 51 H 0.172 0.828 52 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -2.048 2.642 29.615 29.803 hybrid contribution -1.116 2.107 -0.433 2.423 sum -3.164 4.749 29.182 29.735 Atomic orbital electron populations 1.21907 0.92748 1.02769 1.02242 1.19668 0.96484 0.95700 0.91423 1.21909 1.01830 0.93699 1.02244 1.21248 0.99124 0.95659 0.81763 1.45129 1.57644 1.33517 1.04442 1.16000 0.80483 0.83090 0.80308 1.90932 1.42460 1.27507 1.85826 1.45539 1.55772 1.32417 1.05521 1.20905 0.95055 0.99057 0.78449 1.22387 0.96246 1.00426 0.98881 1.20880 0.92071 0.96847 0.88177 1.44095 1.01492 1.67437 1.18520 1.19179 1.13950 1.17429 0.87516 0.91699 1.25053 1.00743 0.96802 0.97125 1.70028 1.29015 1.25752 1.29981 0.86310 0.76984 0.81049 0.82495 1.21398 1.21597 1.20548 1.20737 0.87606 0.96177 0.90689 1.22541 0.96467 1.01211 0.98370 1.20655 0.99323 0.97250 0.94865 1.21394 0.97487 0.98961 0.91672 1.22139 0.99794 0.97393 0.99854 1.22821 0.94667 0.94048 0.94959 1.67760 1.21156 1.30861 0.99042 1.22949 0.93174 0.91593 0.98021 0.91782 0.92110 0.91966 0.92108 0.91959 0.91780 0.91203 0.91214 0.77266 0.77723 0.90069 0.92512 0.92709 0.96161 0.92627 0.93632 0.96092 0.89063 0.92810 0.92276 0.84893 0.84792 0.82830 0.82206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.77 8.12 37.16 0.30 -0.47 16 2 C -0.03 -0.20 0.62 -155.66 -0.10 -0.30 16 3 C -0.14 -0.78 8.12 37.16 0.30 -0.48 16 4 C 0.15 1.34 3.23 -4.04 -0.01 1.33 16 5 N -0.75 -7.42 4.96 -65.23 -0.32 -7.74 16 6 C 0.70 10.22 8.53 -86.93 -0.74 9.48 16 7 O -0.59 -11.26 16.01 5.28 0.08 -11.18 16 8 N -0.74 -10.26 5.08 -58.64 -0.30 -10.55 16 9 C 0.17 2.97 2.42 -67.89 -0.16 2.80 16 10 C -0.14 -2.58 5.65 -26.61 -0.15 -2.73 16 11 C 0.15 3.21 6.52 -3.71 -0.02 3.19 16 12 N -0.59 -14.86 2.99 -172.32 -0.52 -15.37 16 13 C -0.25 -6.87 9.58 -15.06 -0.14 -7.02 16 14 H 0.07 1.75 7.88 -52.49 -0.41 1.33 16 15 C 0.00 0.03 4.92 -17.43 -0.09 -0.05 16 16 N -0.90 -26.09 11.19 55.49 0.62 -25.47 16 17 Si 0.90 21.54 29.59 -169.99 -5.03 16.51 16 18 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 C 0.17 4.10 5.30 -3.71 -0.02 4.08 16 22 C -0.15 -2.66 5.55 -26.61 -0.15 -2.80 16 23 C -0.12 -0.87 4.76 -104.48 -0.50 -1.37 16 24 C -0.07 -0.42 8.85 -39.27 -0.35 -0.77 16 25 C -0.17 -1.01 10.11 -39.44 -0.40 -1.41 16 26 C 0.09 0.69 11.18 -17.55 -0.20 0.50 16 27 N -0.48 -4.89 10.36 -13.25 -0.14 -5.02 16 28 C 0.10 0.92 10.15 -17.55 -0.18 0.74 16 29 H 0.06 0.32 6.86 -51.93 -0.36 -0.03 16 30 H 0.06 0.27 7.47 -51.93 -0.39 -0.12 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.27 7.44 -51.93 -0.39 -0.12 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.33 6.86 -51.93 -0.36 -0.03 16 35 H 0.07 0.72 7.53 -51.93 -0.39 0.33 16 36 H 0.07 0.72 7.53 -51.93 -0.39 0.33 16 37 H 0.39 2.79 6.18 -40.82 -0.25 2.54 16 38 H 0.39 4.24 8.62 -40.82 -0.35 3.88 16 39 H 0.08 1.63 7.57 -51.93 -0.39 1.23 16 40 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 44 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 45 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.09 2.38 6.07 -51.93 -0.31 2.06 16 47 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 48 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 49 H 0.13 0.53 7.26 -52.49 -0.38 0.15 16 50 H 0.13 0.44 8.06 -52.49 -0.42 0.02 16 51 H 0.15 0.77 8.06 -52.48 -0.42 0.35 16 52 H 0.16 1.46 5.91 -52.48 -0.31 1.15 16 LS Contribution 405.80 15.07 6.12 6.12 Total: -1.00 -33.63 405.80 -10.55 -44.18 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -8.46 Total: 3.82 kcal Atomic # 6 Polarization: 7.32 SS G_CDS: -2.60 Total: 4.72 kcal Atomic # 7 Polarization: -63.51 SS G_CDS: -0.65 Total: -64.16 kcal Atomic # 8 Polarization: -11.26 SS G_CDS: 0.08 Total: -11.18 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.03 Total: 16.51 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -33.63 -10.55 -44.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001678701510.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.139 kcal (2) G-P(sol) polarization free energy of solvation -33.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds