Wall clock time and date at job start Wed Apr 1 2020 05:40:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47274 * 2 1 4 4 C 1.52995 * 109.47197 * 240.00313 * 2 1 3 5 5 N 1.46500 * 109.47425 * 59.99743 * 4 2 1 6 6 C 1.34777 * 120.00269 * 180.02562 * 5 4 2 7 7 O 1.21595 * 119.99824 * 359.97438 * 6 5 4 8 8 N 1.34768 * 119.99935 * 179.97438 * 6 5 4 9 9 C 1.46504 * 119.99955 * 179.97438 * 8 6 5 10 10 C 1.53039 * 109.46138 * 275.02893 * 9 8 6 11 11 C 1.53197 * 109.31548 * 178.59771 * 10 9 8 12 12 N 1.46927 * 108.75772 * 54.65662 * 11 10 9 13 13 C 1.36943 * 120.62666 * 126.41041 * 12 11 10 14 14 H 1.07994 * 120.00177 * 331.82060 * 13 12 11 15 15 C 1.38814 * 119.99798 * 151.82558 * 13 12 11 16 16 N 1.31616 * 119.99927 * 343.06624 * 15 13 12 17 17 Si 1.86798 * 119.99995 * 163.07458 * 15 13 12 18 18 H 1.48494 * 109.47676 * 89.99367 * 17 15 13 19 19 H 1.48504 * 109.47267 * 209.99734 * 17 15 13 20 20 H 1.48504 * 109.46902 * 329.99213 * 17 15 13 21 21 C 1.46929 * 118.74133 * 306.38252 * 12 11 10 22 22 C 1.53041 * 109.46022 * 154.97645 * 9 8 6 23 23 C 1.50699 * 109.47252 * 120.00033 * 2 1 3 24 24 C 1.38675 * 120.41856 * 299.72294 * 23 2 1 25 25 C 1.38635 * 118.41809 * 179.78444 * 24 23 2 26 26 C 1.38222 * 119.16234 * 0.50605 * 25 24 23 27 27 N 1.31854 * 120.76376 * 359.73668 * 26 25 24 28 28 C 1.31886 * 121.72608 * 359.97438 * 27 26 25 29 29 H 1.08998 * 109.46930 * 59.99693 * 1 2 3 30 30 H 1.09005 * 109.46840 * 299.99913 * 1 2 3 31 31 H 1.08995 * 109.46809 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47116 * 60.00256 * 3 2 1 33 33 H 1.08999 * 109.47497 * 179.97438 * 3 2 1 34 34 H 1.08998 * 109.47392 * 300.00024 * 3 2 1 35 35 H 1.08997 * 109.47640 * 180.02562 * 4 2 1 36 36 H 1.09004 * 109.46761 * 299.99706 * 4 2 1 37 37 H 0.96997 * 119.99474 * 0.02562 * 5 4 2 38 38 H 0.96997 * 120.00644 * 0.02562 * 8 6 5 39 39 H 1.08995 * 109.46253 * 35.00136 * 9 8 6 40 40 H 1.09001 * 109.49806 * 298.56485 * 10 9 8 41 41 H 1.09000 * 109.49676 * 58.66341 * 10 9 8 42 42 H 1.09000 * 109.59913 * 294.87393 * 11 10 9 43 43 H 1.08991 * 109.70335 * 174.50650 * 11 10 9 44 44 H 0.97007 * 119.99843 * 180.02562 * 16 15 13 45 45 H 1.08998 * 109.58865 * 293.82168 * 21 12 11 46 46 H 1.09007 * 109.69910 * 173.47070 * 21 12 11 47 47 H 1.09006 * 109.49666 * 301.33817 * 22 9 8 48 48 H 1.08997 * 109.50173 * 61.39978 * 22 9 8 49 49 H 1.07992 * 120.79209 * 0.02562 * 24 23 2 50 50 H 1.07997 * 120.41449 * 180.21915 * 25 24 23 51 51 H 1.08003 * 119.62022 * 179.74446 * 26 25 24 52 52 H 1.08005 * 119.61962 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 1.5517 -0.0306 -2.4454 6 6 1.8768 -0.4913 -3.6695 7 8 2.5760 -1.4799 -3.7811 8 7 1.4271 0.1437 -4.7699 9 6 1.7811 -0.3567 -6.1005 10 6 3.1439 0.2057 -6.5110 11 6 3.5266 -0.3473 -7.8874 12 7 2.4422 -0.0515 -8.8336 13 6 2.7012 0.5998 -10.0101 14 1 3.5342 1.2838 -10.0767 15 6 1.8928 0.3808 -11.1171 16 7 1.1022 -0.6708 -11.1570 17 14 1.9271 1.5783 -12.5503 18 1 2.9585 1.1498 -13.5290 19 1 0.5969 1.5990 -13.2101 20 1 2.2532 2.9384 -12.0511 21 6 1.0749 -0.4683 -8.4939 22 6 0.7199 0.0858 -7.1106 23 6 2.0324 -0.7104 1.2304 24 6 1.7074 -0.2408 2.4942 25 6 2.1881 -0.9290 3.5975 26 6 2.9785 -2.0461 3.4027 27 7 3.2714 -2.4611 2.1859 28 6 2.8271 -1.8348 1.1137 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.6767 1.9563 0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9564 -0.8899 35 1 3.1300 -0.7216 -1.2491 36 1 1.6767 -1.7489 -1.2492 37 1 0.9943 0.7582 -2.3563 38 1 0.8698 0.9326 -4.6809 39 1 1.8294 -1.4454 -6.0781 40 1 3.0894 1.2934 -6.5579 41 1 3.8951 -0.0901 -5.7786 42 1 3.6698 -1.4258 -7.8212 43 1 4.4484 0.1234 -8.2292 44 1 0.5376 -0.8240 -11.9307 45 1 1.0181 -1.5567 -8.4772 46 1 0.3769 -0.0774 -9.2343 47 1 -0.2545 -0.2954 -6.8050 48 1 0.6880 1.1745 -7.1514 49 1 1.0913 0.6377 2.6159 50 1 1.9519 -0.5937 4.5965 51 1 3.3604 -2.5854 4.2569 52 1 3.0877 -2.2047 0.1330 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001678701510.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:40:53 Heat of formation + Delta-G solvation = -3.112447 kcal Electronic energy + Delta-G solvation = -30264.379501 eV Core-core repulsion = 26263.116417 eV Total energy + Delta-G solvation = -4001.263084 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.68682 -41.01463 -39.24546 -38.17158 -35.94697 -34.81090 -33.79167 -32.96878 -31.76146 -31.25178 -30.89821 -28.17775 -27.89778 -26.66365 -24.62901 -24.17861 -23.88757 -23.44860 -21.83599 -21.04488 -20.48790 -19.48884 -18.63155 -18.16237 -17.55876 -17.00240 -16.74462 -16.54627 -16.16164 -15.74532 -15.52226 -15.39639 -15.32692 -15.19558 -14.81708 -14.72441 -14.59872 -14.32358 -14.22744 -14.05337 -13.99253 -13.37979 -13.18959 -13.09701 -12.99707 -12.79430 -12.59995 -12.50116 -12.22247 -12.14241 -12.11499 -12.00759 -11.85997 -11.76166 -11.54719 -11.38647 -11.19978 -10.69774 -10.54928 -10.31951 -10.29681 -9.90761 -9.71596 -8.69603 -7.86872 -5.32451 0.17457 0.37285 1.49100 1.50088 1.60301 1.70280 2.20541 2.52967 2.86373 3.24315 3.32210 3.46460 3.51778 3.67717 3.76722 3.91898 3.92598 4.05232 4.08462 4.08880 4.12995 4.33153 4.36535 4.47976 4.62309 4.64053 4.65771 4.66789 4.81174 4.83216 4.83617 4.87271 4.94942 4.95293 5.02522 5.05459 5.08474 5.17549 5.17800 5.29658 5.31444 5.35771 5.37526 5.47624 5.50869 5.62677 5.65830 5.71743 5.80113 6.06338 6.40006 7.05675 7.15453 7.16256 7.64596 7.84928 8.38225 9.20324 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.032464 B = 0.001757 C = 0.001729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.294983 B =15933.760901 C =16193.086373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.019 4.019 3 C -0.138 4.138 4 C 0.148 3.852 5 N -0.726 5.726 6 C 0.699 3.301 7 O -0.638 6.638 8 N -0.725 5.725 9 C 0.182 3.818 10 C -0.123 4.123 11 C 0.144 3.856 12 N -0.608 5.608 13 C -0.263 4.263 14 H 0.067 0.933 15 C -0.050 4.050 16 N -0.936 5.936 17 Si 0.969 3.031 18 H -0.287 1.287 19 H -0.291 1.291 20 H -0.268 1.268 21 C 0.178 3.822 22 C -0.127 4.127 23 C -0.119 4.119 24 C -0.068 4.068 25 C -0.164 4.164 26 C 0.075 3.925 27 N -0.518 5.518 28 C 0.072 3.928 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.048 0.952 32 H 0.081 0.919 33 H 0.048 0.952 34 H 0.072 0.928 35 H 0.054 0.946 36 H 0.053 0.947 37 H 0.411 0.589 38 H 0.410 0.590 39 H 0.053 0.947 40 H 0.067 0.933 41 H 0.056 0.944 42 H 0.005 0.995 43 H 0.057 0.943 44 H 0.251 0.749 45 H -0.007 1.007 46 H 0.064 0.936 47 H 0.077 0.923 48 H 0.072 0.928 49 H 0.163 0.837 50 H 0.167 0.833 51 H 0.173 0.827 52 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.443 7.472 32.449 33.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.020 4.020 3 C -0.196 4.196 4 C 0.023 3.977 5 N -0.384 5.384 6 C 0.399 3.601 7 O -0.519 6.519 8 N -0.380 5.380 9 C 0.076 3.924 10 C -0.163 4.163 11 C 0.018 3.982 12 N -0.332 5.332 13 C -0.394 4.394 14 H 0.085 0.915 15 C -0.246 4.246 16 N -0.582 5.582 17 Si 0.797 3.203 18 H -0.214 1.214 19 H -0.217 1.217 20 H -0.193 1.193 21 C 0.052 3.948 22 C -0.166 4.166 23 C -0.122 4.122 24 C -0.094 4.094 25 C -0.183 4.183 26 C -0.082 4.082 27 N -0.227 5.227 28 C -0.084 4.084 29 H 0.091 0.909 30 H 0.100 0.900 31 H 0.067 0.933 32 H 0.100 0.900 33 H 0.067 0.933 34 H 0.091 0.909 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.249 0.751 38 H 0.246 0.754 39 H 0.071 0.929 40 H 0.086 0.914 41 H 0.075 0.925 42 H 0.023 0.977 43 H 0.075 0.925 44 H 0.060 0.940 45 H 0.011 0.989 46 H 0.082 0.918 47 H 0.095 0.905 48 H 0.091 0.909 49 H 0.181 0.819 50 H 0.184 0.816 51 H 0.190 0.810 52 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -3.382 5.789 32.130 32.822 hybrid contribution -0.654 1.067 -1.110 1.672 sum -4.036 6.856 31.020 32.024 Atomic orbital electron populations 1.21923 0.91473 1.02421 1.03737 1.19573 0.97240 0.95831 0.89338 1.21924 1.01058 0.92848 1.03732 1.21265 0.98283 0.95434 0.82703 1.44882 1.56826 1.33615 1.03046 1.16152 0.80063 0.82525 0.81393 1.90913 1.44651 1.29751 1.86621 1.45088 1.55970 1.32969 1.03967 1.20466 0.94365 0.97458 0.80098 1.22175 0.96860 1.00715 0.96565 1.20966 0.91587 0.96145 0.89512 1.44347 1.02717 1.67476 1.18634 1.19513 1.13941 1.17418 0.88481 0.91508 1.25828 1.00721 0.98312 0.99701 1.70190 1.29915 1.27434 1.30628 0.85254 0.76582 0.79291 0.79146 1.21441 1.21731 1.19321 1.20573 0.86618 0.94567 0.93073 1.22247 0.97593 1.01651 0.95130 1.20715 0.98849 0.96575 0.96012 1.21755 0.97218 0.99613 0.90808 1.22499 0.98205 0.96185 1.01421 1.23255 0.95229 0.95114 0.94554 1.67676 1.22552 1.32237 1.00208 1.22864 0.94911 0.93068 0.97514 0.90888 0.90023 0.93269 0.90016 0.93273 0.90906 0.92803 0.92820 0.75093 0.75353 0.92863 0.91428 0.92547 0.97729 0.92462 0.94021 0.98902 0.91751 0.90485 0.90937 0.81904 0.81575 0.81036 0.83775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 8.12 71.98 0.58 -0.55 16 2 C -0.02 -0.21 0.62 -52.93 -0.03 -0.24 16 3 C -0.14 -1.14 8.12 71.98 0.58 -0.56 16 4 C 0.15 2.69 3.23 86.38 0.28 2.97 16 5 N -0.73 -13.28 4.96 -478.54 -2.37 -15.65 16 6 C 0.70 19.77 8.53 179.06 1.53 21.30 16 7 O -0.64 -24.85 16.01 -4.01 -0.06 -24.91 16 8 N -0.73 -18.75 5.08 -457.69 -2.33 -21.07 16 9 C 0.18 6.24 2.42 45.02 0.11 6.35 16 10 C -0.12 -4.48 5.65 30.67 0.17 -4.30 16 11 C 0.14 6.38 6.52 86.36 0.56 6.95 16 12 N -0.61 -30.96 2.99 -699.09 -2.09 -33.06 16 13 C -0.26 -14.53 9.58 84.03 0.81 -13.72 16 14 H 0.07 3.59 7.88 -2.91 -0.02 3.56 16 15 C -0.05 -2.80 4.92 84.86 0.42 -2.38 16 16 N -0.94 -55.34 11.19 21.65 0.24 -55.10 16 17 Si 0.97 44.50 29.59 68.60 2.03 46.53 16 18 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 19 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 20 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 21 C 0.18 8.54 5.30 86.36 0.46 9.00 16 22 C -0.13 -4.46 5.55 30.67 0.17 -4.29 16 23 C -0.12 -1.61 4.76 -19.77 -0.09 -1.71 16 24 C -0.07 -0.62 8.85 22.47 0.20 -0.43 16 25 C -0.16 -1.49 10.11 22.36 0.23 -1.26 16 26 C 0.08 1.07 11.18 84.69 0.95 2.01 16 27 N -0.52 -10.92 10.36 -195.84 -2.03 -12.95 16 28 C 0.07 1.41 10.15 84.67 0.86 2.27 16 29 H 0.07 0.47 6.86 -2.39 -0.02 0.46 16 30 H 0.08 0.37 7.47 -2.38 -0.02 0.35 16 31 H 0.05 0.55 8.14 -2.39 -0.02 0.54 16 32 H 0.08 0.37 7.44 -2.38 -0.02 0.35 16 33 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.07 0.48 6.86 -2.39 -0.02 0.46 16 35 H 0.05 1.17 7.53 -2.39 -0.02 1.15 16 36 H 0.05 1.17 7.53 -2.38 -0.02 1.15 16 37 H 0.41 4.59 6.18 -92.71 -0.57 4.01 16 38 H 0.41 7.51 8.62 -92.71 -0.80 6.71 16 39 H 0.05 2.17 7.57 -2.39 -0.02 2.15 16 40 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 41 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 42 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 43 H 0.06 2.46 7.93 -2.39 -0.02 2.44 16 44 H 0.25 14.32 8.31 -92.70 -0.77 13.55 16 45 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 46 H 0.06 3.43 6.07 -2.38 -0.01 3.42 16 47 H 0.08 2.38 8.14 -2.38 -0.02 2.36 16 48 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 49 H 0.16 0.49 7.26 -2.91 -0.02 0.47 16 50 H 0.17 0.40 8.06 -2.91 -0.02 0.37 16 51 H 0.17 1.54 8.06 -2.91 -0.02 1.52 16 52 H 0.14 3.04 5.91 -2.91 -0.02 3.02 16 Total: -1.00 -76.42 405.80 0.72 -75.70 By element: Atomic # 1 Polarization: 19.54 SS G_CDS: -0.44 Total: 19.10 kcal Atomic # 6 Polarization: 13.63 SS G_CDS: 7.78 Total: 21.41 kcal Atomic # 7 Polarization: -129.24 SS G_CDS: -8.58 Total: -137.82 kcal Atomic # 8 Polarization: -24.85 SS G_CDS: -0.06 Total: -24.91 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -76.42 0.72 -75.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001678701510.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.587 kcal (2) G-P(sol) polarization free energy of solvation -76.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds