Wall clock time and date at job start Wed Apr 1 2020 03:53:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47316 * 2 1 4 4 C 1.53005 * 109.47325 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47325 * 180.02562 * 4 3 2 6 6 H 1.09001 * 109.46979 * 305.00169 * 5 4 3 7 7 C 1.52999 * 109.47284 * 185.00611 * 5 4 3 8 8 N 1.46501 * 109.47252 * 185.00253 * 7 5 4 9 9 C 1.36941 * 119.99931 * 179.97438 * 8 7 5 10 10 H 1.07992 * 119.99932 * 359.97438 * 9 8 7 11 11 C 1.38806 * 119.99553 * 179.97438 * 9 8 7 12 12 N 1.31613 * 120.00490 * 359.97438 * 11 9 8 13 13 Si 1.86806 * 119.99736 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.46976 * 89.99540 * 13 11 9 15 15 H 1.48501 * 109.47185 * 209.99751 * 13 11 9 16 16 H 1.48503 * 109.47056 * 329.99702 * 13 11 9 17 17 N 1.46499 * 109.47288 * 64.99970 * 5 4 3 18 18 C 1.34777 * 120.00199 * 275.00460 * 17 5 4 19 19 O 1.21283 * 119.99750 * 359.97438 * 18 17 5 20 20 C 1.50702 * 119.99928 * 180.27479 * 18 17 5 21 21 H 1.08997 * 109.63318 * 59.71983 * 20 18 17 22 22 C 1.53304 * 109.63335 * 180.11911 * 20 18 17 23 23 C 1.52731 * 108.55712 * 189.27737 * 22 20 18 24 24 C 1.50446 * 110.57614 * 309.23141 * 23 22 20 25 25 N 1.32897 * 118.52741 * 197.33742 * 24 23 22 26 26 C 1.31603 * 121.06275 * 180.56200 * 25 24 23 27 27 N 1.31814 * 121.66620 * 359.96931 * 26 25 24 28 28 C 1.32190 * 120.64415 * 359.90684 * 27 26 25 29 29 C 1.37762 * 122.58597 * 17.67289 * 24 23 22 30 30 C 1.50347 * 122.79649 * 359.28876 * 29 24 23 31 31 H 1.08998 * 109.47289 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46988 * 300.00007 * 1 2 3 33 33 H 1.09003 * 109.47017 * 60.00074 * 1 2 3 34 34 H 1.08997 * 109.47427 * 239.99793 * 2 1 3 35 35 H 1.09003 * 109.47017 * 119.99926 * 2 1 3 36 36 H 1.09001 * 109.47098 * 60.00060 * 3 2 1 37 37 H 1.08994 * 109.47304 * 299.99847 * 3 2 1 38 38 H 1.09001 * 109.46737 * 60.00141 * 4 3 2 39 39 H 1.08994 * 109.47050 * 300.00304 * 4 3 2 40 40 H 1.09006 * 109.46830 * 304.99500 * 7 5 4 41 41 H 1.08994 * 109.47535 * 64.99592 * 7 5 4 42 42 H 0.97002 * 119.99978 * 359.97438 * 8 7 5 43 43 H 0.97001 * 120.00452 * 180.02562 * 12 11 9 44 44 H 0.97000 * 119.99484 * 94.99557 * 17 5 4 45 45 H 1.09006 * 109.62845 * 309.18122 * 22 20 18 46 46 H 1.09001 * 109.62857 * 69.75840 * 22 20 18 47 47 H 1.08999 * 109.34877 * 188.82470 * 23 22 20 48 48 H 1.08997 * 109.12509 * 69.50186 * 23 22 20 49 49 H 1.07993 * 119.16721 * 179.97438 * 26 25 24 50 50 H 1.08010 * 120.36004 * 180.02562 * 28 27 26 51 51 H 1.09003 * 109.30243 * 257.26475 * 30 29 24 52 52 H 1.09003 * 109.13975 * 137.77052 * 30 29 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4425 0.0006 5 6 4.0801 2.8849 0.0013 6 1 3.6458 3.4242 -0.8405 7 6 5.6050 2.8868 -0.1239 8 7 6.1032 4.2592 -0.0035 9 6 7.4472 4.5092 -0.0841 10 1 8.1398 3.6947 -0.2361 11 6 7.9191 5.8097 0.0295 12 7 7.0750 6.8024 0.2142 13 14 9.7525 6.1507 -0.0798 14 1 10.1256 6.4030 -1.4948 15 1 10.0837 7.3440 0.7398 16 1 10.5057 4.9763 0.4289 17 7 3.6921 3.5396 1.2531 18 6 2.4747 4.1064 1.3680 19 8 1.7007 4.0749 0.4348 20 6 2.0779 4.7852 2.6536 21 1 2.7707 5.5993 2.8669 22 6 0.6547 5.3404 2.5250 23 6 0.3632 6.2170 3.7413 24 6 0.6902 5.4826 5.0129 25 7 0.1852 5.9360 6.1555 26 6 0.4478 5.3386 7.2984 27 7 1.2179 4.2707 7.3601 28 6 1.7533 3.7618 6.2638 29 6 1.4961 4.3656 5.0383 30 6 2.1065 3.7734 3.7985 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.8934 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 1.6767 1.9563 0.8900 37 1 1.6768 1.9563 -0.8899 38 1 3.9337 0.9285 -0.8891 39 1 3.9330 0.9287 0.8908 40 1 6.0353 2.2733 0.6677 41 1 5.8904 2.4804 -1.0942 42 1 5.4811 4.9907 0.1334 43 1 7.4047 7.7112 0.2932 44 1 4.3113 3.5649 1.9993 45 1 0.5743 5.9345 1.6146 46 1 -0.0581 4.5165 2.4921 47 1 -0.6918 6.4910 3.7444 48 1 0.9675 7.1222 3.6822 49 1 0.0214 5.7334 8.2087 50 1 2.3834 2.8863 6.3196 51 1 1.5444 2.8854 3.5090 52 1 3.1393 3.4940 4.0070 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717530521.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:42 Heat of formation + Delta-G solvation = -11.363544 kcal Electronic energy + Delta-G solvation = -31172.817934 eV Core-core repulsion = 27171.197056 eV Total energy + Delta-G solvation = -4001.620878 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.57963 -39.98916 -37.35818 -36.15150 -34.94827 -34.29034 -33.54350 -31.71591 -31.49971 -30.53108 -29.96433 -27.25647 -25.50633 -24.48624 -24.12977 -23.22045 -22.31969 -21.62034 -20.77417 -20.30228 -19.65115 -18.01304 -17.23562 -17.18731 -16.76003 -16.19185 -15.62913 -15.25964 -14.95079 -14.77278 -14.39916 -14.20701 -14.09148 -13.99082 -13.84835 -13.58383 -13.43099 -13.25709 -13.10361 -12.76643 -12.68060 -12.27087 -12.22695 -11.95815 -11.85682 -11.37823 -11.26383 -11.12844 -11.11388 -11.00098 -10.94212 -10.84770 -10.80140 -10.56479 -10.39372 -10.33640 -10.05403 -9.77474 -9.49406 -9.42228 -9.37064 -8.96242 -8.64040 -7.01105 -5.83258 -3.12970 0.68611 0.83468 2.87256 3.38658 3.42342 3.44771 3.45958 3.52929 3.79346 3.98395 4.22035 4.35294 4.43024 4.51584 4.66217 4.81936 4.85660 5.02821 5.05438 5.09875 5.15695 5.23050 5.28740 5.33033 5.37463 5.41594 5.44254 5.50613 5.51225 5.61509 5.66722 5.80137 5.84464 5.85652 5.92127 5.94573 5.98434 6.01763 6.09933 6.13448 6.18953 6.23456 6.27728 6.42735 6.45438 6.60054 6.67613 6.77151 6.93294 7.63484 7.83780 7.87288 8.34725 8.51482 9.46858 10.02445 10.37809 11.38986 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.007273 B = 0.003499 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3849.032496 B = 8001.267593 C =10668.428363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.126 4.126 3 C -0.111 4.111 4 C -0.126 4.126 5 C 0.138 3.862 6 H 0.087 0.913 7 C 0.144 3.856 8 N -0.731 5.731 9 C -0.243 4.243 10 H 0.070 0.930 11 C -0.011 4.011 12 N -0.931 5.931 13 Si 0.906 3.094 14 H -0.290 1.290 15 H -0.291 1.291 16 H -0.282 1.282 17 N -0.708 5.708 18 C 0.522 3.478 19 O -0.539 6.539 20 C -0.111 4.111 21 H 0.106 0.894 22 C -0.096 4.096 23 C -0.075 4.075 24 C 0.184 3.816 25 N -0.522 5.522 26 C 0.287 3.713 27 N -0.524 5.524 28 C 0.151 3.849 29 C -0.176 4.176 30 C -0.063 4.063 31 H 0.047 0.953 32 H 0.051 0.949 33 H 0.053 0.947 34 H 0.057 0.943 35 H 0.055 0.945 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.061 0.939 40 H 0.023 0.977 41 H 0.032 0.968 42 H 0.386 0.614 43 H 0.255 0.745 44 H 0.403 0.597 45 H 0.090 0.910 46 H 0.072 0.928 47 H 0.094 0.906 48 H 0.094 0.906 49 H 0.194 0.806 50 H 0.169 0.831 51 H 0.087 0.913 52 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.135 -9.140 8.899 19.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.163 4.163 3 C -0.148 4.148 4 C -0.165 4.165 5 C 0.033 3.967 6 H 0.105 0.895 7 C 0.016 3.984 8 N -0.376 5.376 9 C -0.375 4.375 10 H 0.088 0.912 11 C -0.207 4.207 12 N -0.579 5.579 13 Si 0.737 3.263 14 H -0.217 1.217 15 H -0.218 1.218 16 H -0.208 1.208 17 N -0.358 5.358 18 C 0.307 3.693 19 O -0.416 6.416 20 C -0.133 4.133 21 H 0.124 0.876 22 C -0.135 4.135 23 C -0.113 4.113 24 C 0.040 3.960 25 N -0.236 5.236 26 C -0.001 4.001 27 N -0.237 5.237 28 C -0.016 4.016 29 C -0.180 4.180 30 C -0.101 4.101 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.088 0.912 39 H 0.080 0.920 40 H 0.041 0.959 41 H 0.050 0.950 42 H 0.220 0.780 43 H 0.065 0.935 44 H 0.237 0.763 45 H 0.109 0.891 46 H 0.091 0.909 47 H 0.112 0.888 48 H 0.113 0.887 49 H 0.211 0.789 50 H 0.186 0.814 51 H 0.105 0.895 52 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -15.898 -8.806 9.056 20.306 hybrid contribution 1.662 0.220 -0.244 1.694 sum -14.237 -8.587 8.811 18.817 Atomic orbital electron populations 1.21740 0.96275 1.00835 1.01826 1.21577 0.95590 0.97806 1.01347 1.21662 0.94757 0.95235 1.03191 1.21974 0.96069 0.96355 1.02134 1.21291 0.95941 0.92411 0.87053 0.89514 1.20962 0.89357 0.89345 0.98730 1.42341 1.05369 1.02021 1.87853 1.19207 0.83654 0.92483 1.42107 0.91178 1.24732 0.97655 0.95657 1.02642 1.69655 1.32905 0.99006 1.56329 0.86207 0.85121 0.77416 0.77517 1.21690 1.21778 1.20754 1.45985 1.15944 1.56897 1.17000 1.20215 0.81863 0.78135 0.89051 1.90688 1.51533 1.59031 1.40352 1.21379 0.99731 0.99163 0.92994 0.87636 1.21381 0.94597 0.99842 0.97631 1.20486 1.03637 0.98439 0.88735 1.21410 0.89452 0.90860 0.94324 1.68403 1.23771 1.32420 0.98989 1.24879 0.91170 0.88216 0.95854 1.68409 1.10394 1.12764 1.32177 1.23293 0.93885 0.97411 0.87022 1.21118 1.00828 0.98297 0.97731 1.20295 1.01614 0.97961 0.90240 0.93351 0.93034 0.92786 0.92449 0.92646 0.91784 0.91555 0.91237 0.92015 0.95875 0.95004 0.78005 0.93480 0.76261 0.89120 0.90940 0.88806 0.88743 0.78926 0.81431 0.89456 0.89313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.91 37.16 0.37 -1.10 16 2 C -0.13 -1.31 5.93 -26.73 -0.16 -1.47 16 3 C -0.11 -1.37 3.82 -26.73 -0.10 -1.47 16 4 C -0.13 -1.57 4.89 -26.73 -0.13 -1.70 16 5 C 0.14 2.10 2.41 -67.93 -0.16 1.94 16 6 H 0.09 1.54 7.58 -51.93 -0.39 1.15 16 7 C 0.14 2.64 5.82 -4.04 -0.02 2.61 16 8 N -0.73 -17.31 5.43 -59.91 -0.33 -17.64 16 9 C -0.24 -6.51 9.99 -15.06 -0.15 -6.66 16 10 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 11 C -0.01 -0.29 5.50 -17.44 -0.10 -0.39 16 12 N -0.93 -27.26 13.06 55.49 0.72 -26.53 16 13 Si 0.91 21.82 29.55 -169.99 -5.02 16.80 16 14 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 15 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 16 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 17 N -0.71 -9.87 4.38 -53.81 -0.24 -10.11 16 18 C 0.52 7.20 5.70 -10.98 -0.06 7.14 16 19 O -0.54 -8.83 12.99 5.55 0.07 -8.76 16 20 C -0.11 -1.22 2.54 -91.70 -0.23 -1.46 16 21 H 0.11 1.23 8.11 -51.93 -0.42 0.80 16 22 C -0.10 -1.00 4.71 -26.71 -0.13 -1.12 16 23 C -0.08 -0.73 5.95 -28.14 -0.17 -0.90 16 24 C 0.18 2.02 6.63 -82.43 -0.55 1.47 16 25 N -0.52 -6.05 10.32 -11.00 -0.11 -6.16 16 26 C 0.29 2.99 12.29 -92.30 -1.13 1.86 16 27 N -0.52 -5.78 10.44 -14.55 -0.15 -5.93 16 28 C 0.15 1.47 10.93 -17.11 -0.19 1.29 16 29 C -0.18 -1.76 5.74 -104.68 -0.60 -2.36 16 30 C -0.06 -0.56 4.89 -28.14 -0.14 -0.70 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.84 5.64 -51.93 -0.29 0.55 16 37 H 0.07 0.94 7.85 -51.93 -0.41 0.54 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.39 9.75 7.33 -40.82 -0.30 9.45 16 43 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 44 H 0.40 5.38 8.27 -40.82 -0.34 5.04 16 45 H 0.09 1.03 7.81 -51.93 -0.41 0.62 16 46 H 0.07 0.75 8.10 -51.93 -0.42 0.33 16 47 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 48 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 49 H 0.19 1.39 8.06 -52.49 -0.42 0.97 16 50 H 0.17 1.17 8.06 -52.48 -0.42 0.75 16 51 H 0.09 0.75 8.11 -51.93 -0.42 0.33 16 52 H 0.09 0.70 7.87 -51.93 -0.41 0.30 16 LS Contribution 413.63 15.07 6.23 6.23 Total: -1.00 -31.87 413.63 -11.32 -43.19 By element: Atomic # 1 Polarization: 20.79 SS G_CDS: -8.85 Total: 11.94 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: -3.65 Total: -3.03 kcal Atomic # 7 Polarization: -66.27 SS G_CDS: -0.10 Total: -66.37 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: 0.07 Total: -8.76 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -31.87 -11.32 -43.19 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717530521.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.828 kcal (2) G-P(sol) polarization free energy of solvation -31.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds