Wall clock time and date at job start Wed Apr 1 2020 03:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47316 * 2 1 4 4 C 1.53005 * 109.47325 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47325 * 180.02562 * 4 3 2 6 6 H 1.09001 * 109.46979 * 305.00169 * 5 4 3 7 7 C 1.52999 * 109.47284 * 185.00611 * 5 4 3 8 8 N 1.46501 * 109.47252 * 185.00253 * 7 5 4 9 9 C 1.36941 * 119.99931 * 179.97438 * 8 7 5 10 10 H 1.07992 * 119.99932 * 359.97438 * 9 8 7 11 11 C 1.38806 * 119.99553 * 179.97438 * 9 8 7 12 12 N 1.31613 * 120.00490 * 359.97438 * 11 9 8 13 13 Si 1.86806 * 119.99736 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.46976 * 89.99540 * 13 11 9 15 15 H 1.48501 * 109.47185 * 209.99751 * 13 11 9 16 16 H 1.48503 * 109.47056 * 329.99702 * 13 11 9 17 17 N 1.46499 * 109.47288 * 64.99970 * 5 4 3 18 18 C 1.34777 * 120.00199 * 275.00460 * 17 5 4 19 19 O 1.21283 * 119.99750 * 359.97438 * 18 17 5 20 20 C 1.50702 * 119.99928 * 180.27479 * 18 17 5 21 21 H 1.08997 * 109.63318 * 59.71983 * 20 18 17 22 22 C 1.53304 * 109.63335 * 180.11911 * 20 18 17 23 23 C 1.52731 * 108.55712 * 189.27737 * 22 20 18 24 24 C 1.50446 * 110.57614 * 309.23141 * 23 22 20 25 25 N 1.32897 * 118.52741 * 197.33742 * 24 23 22 26 26 C 1.31603 * 121.06275 * 180.56200 * 25 24 23 27 27 N 1.31814 * 121.66620 * 359.96931 * 26 25 24 28 28 C 1.32190 * 120.64415 * 359.90684 * 27 26 25 29 29 C 1.37762 * 122.58597 * 17.67289 * 24 23 22 30 30 C 1.50347 * 122.79649 * 359.28876 * 29 24 23 31 31 H 1.08998 * 109.47289 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46988 * 300.00007 * 1 2 3 33 33 H 1.09003 * 109.47017 * 60.00074 * 1 2 3 34 34 H 1.08997 * 109.47427 * 239.99793 * 2 1 3 35 35 H 1.09003 * 109.47017 * 119.99926 * 2 1 3 36 36 H 1.09001 * 109.47098 * 60.00060 * 3 2 1 37 37 H 1.08994 * 109.47304 * 299.99847 * 3 2 1 38 38 H 1.09001 * 109.46737 * 60.00141 * 4 3 2 39 39 H 1.08994 * 109.47050 * 300.00304 * 4 3 2 40 40 H 1.09006 * 109.46830 * 304.99500 * 7 5 4 41 41 H 1.08994 * 109.47535 * 64.99592 * 7 5 4 42 42 H 0.97002 * 119.99978 * 359.97438 * 8 7 5 43 43 H 0.97001 * 120.00452 * 180.02562 * 12 11 9 44 44 H 0.97000 * 119.99484 * 94.99557 * 17 5 4 45 45 H 1.09006 * 109.62845 * 309.18122 * 22 20 18 46 46 H 1.09001 * 109.62857 * 69.75840 * 22 20 18 47 47 H 1.08999 * 109.34877 * 188.82470 * 23 22 20 48 48 H 1.08997 * 109.12509 * 69.50186 * 23 22 20 49 49 H 1.07993 * 119.16721 * 179.97438 * 26 25 24 50 50 H 1.08010 * 120.36004 * 180.02562 * 28 27 26 51 51 H 1.09003 * 109.30243 * 257.26475 * 30 29 24 52 52 H 1.09003 * 109.13975 * 137.77052 * 30 29 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4425 0.0006 5 6 4.0801 2.8849 0.0013 6 1 3.6458 3.4242 -0.8405 7 6 5.6050 2.8868 -0.1239 8 7 6.1032 4.2592 -0.0035 9 6 7.4472 4.5092 -0.0841 10 1 8.1398 3.6947 -0.2361 11 6 7.9191 5.8097 0.0295 12 7 7.0750 6.8024 0.2142 13 14 9.7525 6.1507 -0.0798 14 1 10.1256 6.4030 -1.4948 15 1 10.0837 7.3440 0.7398 16 1 10.5057 4.9763 0.4289 17 7 3.6921 3.5396 1.2531 18 6 2.4747 4.1064 1.3680 19 8 1.7007 4.0749 0.4348 20 6 2.0779 4.7852 2.6536 21 1 2.7707 5.5993 2.8669 22 6 0.6547 5.3404 2.5250 23 6 0.3632 6.2170 3.7413 24 6 0.6902 5.4826 5.0129 25 7 0.1852 5.9360 6.1555 26 6 0.4478 5.3386 7.2984 27 7 1.2179 4.2707 7.3601 28 6 1.7533 3.7618 6.2638 29 6 1.4961 4.3656 5.0383 30 6 2.1065 3.7734 3.7985 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.8934 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 1.6767 1.9563 0.8900 37 1 1.6768 1.9563 -0.8899 38 1 3.9337 0.9285 -0.8891 39 1 3.9330 0.9287 0.8908 40 1 6.0353 2.2733 0.6677 41 1 5.8904 2.4804 -1.0942 42 1 5.4811 4.9907 0.1334 43 1 7.4047 7.7112 0.2932 44 1 4.3113 3.5649 1.9993 45 1 0.5743 5.9345 1.6146 46 1 -0.0581 4.5165 2.4921 47 1 -0.6918 6.4910 3.7444 48 1 0.9675 7.1222 3.6822 49 1 0.0214 5.7334 8.2087 50 1 2.3834 2.8863 6.3196 51 1 1.5444 2.8854 3.5090 52 1 3.1393 3.4940 4.0070 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717530521.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:41 Heat of formation + Delta-G solvation = -29.635184 kcal Electronic energy + Delta-G solvation = -31173.610252 eV Core-core repulsion = 27171.197056 eV Total energy + Delta-G solvation = -4002.413196 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.38035 -41.09584 -38.40468 -37.27809 -36.22201 -35.17611 -34.95531 -33.07231 -32.44140 -31.90654 -30.86551 -28.65542 -26.38255 -25.84333 -25.20356 -23.99329 -23.72656 -22.68051 -21.76801 -21.48001 -20.64581 -19.23230 -18.77490 -18.05468 -17.72132 -17.35302 -16.69981 -16.60126 -16.06530 -15.88275 -15.45843 -15.32363 -15.24698 -14.92939 -14.86603 -14.77943 -14.48693 -14.40128 -14.15560 -14.00591 -13.68907 -13.51666 -13.13778 -13.10082 -12.86442 -12.83300 -12.75879 -12.47071 -12.15048 -12.11172 -11.97720 -11.96966 -11.85239 -11.81716 -11.73300 -11.39209 -11.34980 -11.29746 -10.96732 -10.59626 -10.19680 -10.17495 -9.83587 -8.98625 -7.93346 -5.21953 -0.07963 0.05233 1.49032 1.49987 1.58039 1.75912 2.31157 2.57017 2.75118 3.03078 3.28159 3.41277 3.45781 3.51527 3.62393 3.68301 3.79284 4.02268 4.07745 4.13183 4.24621 4.28428 4.30343 4.35433 4.40928 4.42131 4.45770 4.58015 4.60269 4.66215 4.68368 4.82669 4.87510 4.90353 4.96109 4.99036 5.03531 5.06896 5.12683 5.14833 5.18501 5.24239 5.28234 5.37357 5.47350 5.47917 5.52766 5.63443 5.72195 5.99776 6.27791 6.70116 7.09784 7.35720 7.38912 8.10144 8.33496 9.29472 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.007273 B = 0.003499 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3849.032496 B = 8001.267593 C =10668.428363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.121 4.121 3 C -0.103 4.103 4 C -0.117 4.117 5 C 0.149 3.851 6 H 0.056 0.944 7 C 0.145 3.855 8 N -0.742 5.742 9 C -0.242 4.242 10 H 0.078 0.922 11 C -0.071 4.071 12 N -0.967 5.967 13 Si 0.968 3.032 14 H -0.292 1.292 15 H -0.298 1.298 16 H -0.267 1.267 17 N -0.705 5.705 18 C 0.521 3.479 19 O -0.567 6.567 20 C -0.105 4.105 21 H 0.099 0.901 22 C -0.089 4.089 23 C -0.069 4.069 24 C 0.168 3.832 25 N -0.541 5.541 26 C 0.280 3.720 27 N -0.539 5.539 28 C 0.150 3.850 29 C -0.179 4.179 30 C -0.053 4.053 31 H 0.063 0.937 32 H 0.048 0.952 33 H 0.044 0.956 34 H 0.062 0.938 35 H 0.068 0.932 36 H 0.055 0.945 37 H 0.040 0.960 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.041 0.959 41 H 0.032 0.968 42 H 0.375 0.625 43 H 0.249 0.751 44 H 0.407 0.593 45 H 0.077 0.923 46 H 0.072 0.928 47 H 0.101 0.899 48 H 0.094 0.906 49 H 0.219 0.781 50 H 0.196 0.804 51 H 0.096 0.904 52 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.693 -11.212 10.004 21.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.159 4.159 3 C -0.141 4.141 4 C -0.156 4.156 5 C 0.043 3.957 6 H 0.075 0.925 7 C 0.018 3.982 8 N -0.385 5.385 9 C -0.374 4.374 10 H 0.096 0.904 11 C -0.263 4.263 12 N -0.617 5.617 13 Si 0.798 3.202 14 H -0.219 1.219 15 H -0.225 1.225 16 H -0.192 1.192 17 N -0.355 5.355 18 C 0.308 3.692 19 O -0.446 6.446 20 C -0.126 4.126 21 H 0.118 0.882 22 C -0.127 4.127 23 C -0.106 4.106 24 C 0.024 3.976 25 N -0.255 5.255 26 C -0.008 4.008 27 N -0.253 5.253 28 C -0.017 4.017 29 C -0.183 4.183 30 C -0.091 4.091 31 H 0.082 0.918 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.074 0.926 37 H 0.059 0.941 38 H 0.096 0.904 39 H 0.098 0.902 40 H 0.059 0.941 41 H 0.050 0.950 42 H 0.207 0.793 43 H 0.058 0.942 44 H 0.243 0.757 45 H 0.095 0.905 46 H 0.091 0.909 47 H 0.119 0.881 48 H 0.112 0.888 49 H 0.235 0.765 50 H 0.213 0.787 51 H 0.115 0.885 52 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -15.451 -10.930 10.162 21.482 hybrid contribution 1.489 0.817 -0.622 1.809 sum -13.962 -10.113 9.541 19.703 Atomic orbital electron populations 1.21735 0.95945 1.01676 1.01292 1.21544 0.95885 0.96247 1.02220 1.21538 0.94544 0.96406 1.01573 1.21903 0.96061 0.94201 1.03399 1.21064 0.93750 0.94103 0.86748 0.92546 1.21114 0.91274 0.86759 0.99045 1.42515 1.04379 1.03879 1.87737 1.19613 0.85121 0.92601 1.40051 0.90442 1.25477 1.01482 0.95748 1.03640 1.69808 1.34528 0.98994 1.58401 0.85217 0.80756 0.77244 0.76981 1.21940 1.22490 1.19196 1.45940 1.16138 1.56887 1.16584 1.20648 0.81362 0.77547 0.89608 1.90682 1.52320 1.60024 1.41579 1.21326 0.99723 0.99266 0.92302 0.88243 1.21286 0.94292 0.99738 0.97416 1.20419 1.04075 0.98071 0.88055 1.21614 0.89945 0.91509 0.94517 1.68422 1.24512 1.33093 0.99481 1.25416 0.90910 0.88055 0.96418 1.68482 1.10929 1.13158 1.32725 1.23767 0.93548 0.97887 0.86490 1.21186 1.00706 0.98127 0.98236 1.20251 1.02692 0.97331 0.88869 0.91801 0.93300 0.93655 0.91900 0.91357 0.92599 0.94068 0.90435 0.90158 0.94142 0.94996 0.79300 0.94198 0.75691 0.90482 0.90878 0.88088 0.88827 0.76523 0.78710 0.88537 0.87738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.70 9.91 71.98 0.71 -1.99 16 2 C -0.12 -2.28 5.93 30.59 0.18 -2.10 16 3 C -0.10 -2.44 3.82 30.59 0.12 -2.32 16 4 C -0.12 -2.70 4.89 30.59 0.15 -2.56 16 5 C 0.15 4.46 2.41 44.99 0.11 4.57 16 6 H 0.06 2.06 7.58 -2.39 -0.02 2.04 16 7 C 0.14 5.14 5.82 86.38 0.50 5.64 16 8 N -0.74 -34.99 5.43 -343.46 -1.87 -36.86 16 9 C -0.24 -12.79 9.99 84.03 0.84 -11.95 16 10 H 0.08 3.91 7.83 -2.91 -0.02 3.89 16 11 C -0.07 -3.92 5.50 84.86 0.47 -3.46 16 12 N -0.97 -57.38 13.06 21.65 0.28 -57.10 16 13 Si 0.97 44.75 29.55 68.60 2.03 46.78 16 14 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 15 H -0.30 -13.98 7.11 99.48 0.71 -13.28 16 16 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 17 N -0.70 -19.28 4.38 -442.54 -1.94 -21.22 16 18 C 0.52 14.39 5.70 87.66 0.50 14.89 16 19 O -0.57 -19.01 12.99 -3.04 -0.04 -19.05 16 20 C -0.10 -2.27 2.54 -11.50 -0.03 -2.30 16 21 H 0.10 2.31 8.11 -2.39 -0.02 2.29 16 22 C -0.09 -1.86 4.71 30.61 0.14 -1.71 16 23 C -0.07 -1.32 5.95 29.68 0.18 -1.14 16 24 C 0.17 3.56 6.63 42.20 0.28 3.84 16 25 N -0.54 -12.12 10.32 -188.72 -1.95 -14.07 16 26 C 0.28 5.50 12.29 180.94 2.22 7.73 16 27 N -0.54 -11.02 10.44 -199.93 -2.09 -13.11 16 28 C 0.15 2.62 10.93 84.82 0.93 3.55 16 29 C -0.18 -3.31 5.74 -19.90 -0.11 -3.43 16 30 C -0.05 -0.87 4.89 29.68 0.15 -0.72 16 31 H 0.06 0.95 8.14 -2.39 -0.02 0.94 16 32 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.06 1.42 5.64 -2.39 -0.01 1.40 16 37 H 0.04 1.18 7.85 -2.39 -0.02 1.16 16 38 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.04 1.34 8.14 -2.38 -0.02 1.32 16 41 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.37 19.21 7.33 -92.71 -0.68 18.53 16 43 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 44 H 0.41 10.41 8.27 -92.71 -0.77 9.64 16 45 H 0.08 1.82 7.81 -2.38 -0.02 1.80 16 46 H 0.07 1.51 8.10 -2.39 -0.02 1.49 16 47 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 48 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 49 H 0.22 2.82 8.06 -2.91 -0.02 2.80 16 50 H 0.20 2.13 8.06 -2.91 -0.02 2.11 16 51 H 0.10 1.44 8.11 -2.39 -0.02 1.42 16 52 H 0.10 1.40 7.87 -2.39 -0.02 1.38 16 Total: -1.00 -68.39 413.63 1.24 -67.16 By element: Atomic # 1 Polarization: 41.43 SS G_CDS: -0.53 Total: 40.91 kcal Atomic # 6 Polarization: -0.78 SS G_CDS: 7.33 Total: 6.55 kcal Atomic # 7 Polarization: -134.79 SS G_CDS: -7.56 Total: -142.35 kcal Atomic # 8 Polarization: -19.01 SS G_CDS: -0.04 Total: -19.05 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -68.39 1.24 -67.16 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717530521.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.524 kcal (2) G-P(sol) polarization free energy of solvation -68.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds