Wall clock time and date at job start Wed Apr 1 2020 03:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53006 * 109.47478 * 2 1 4 4 C 1.52999 * 109.47000 * 180.02562 * 3 2 1 5 5 C 1.53006 * 109.46626 * 180.02562 * 4 3 2 6 6 H 1.08992 * 109.47046 * 304.99570 * 5 4 3 7 7 C 1.52999 * 109.46811 * 184.99727 * 5 4 3 8 8 N 1.46501 * 109.47016 * 185.00166 * 7 5 4 9 9 C 1.36941 * 119.99965 * 180.02562 * 8 7 5 10 10 H 1.08000 * 120.00222 * 359.97438 * 9 8 7 11 11 C 1.38807 * 119.99787 * 179.97438 * 9 8 7 12 12 N 1.31615 * 120.00284 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 119.99947 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47264 * 90.00256 * 13 11 9 15 15 H 1.48496 * 109.47397 * 210.00630 * 13 11 9 16 16 H 1.48503 * 109.47048 * 330.00236 * 13 11 9 17 17 N 1.46496 * 109.47070 * 64.99833 * 5 4 3 18 18 C 1.34776 * 120.00212 * 274.99432 * 17 5 4 19 19 O 1.21288 * 119.99777 * 0.02562 * 18 17 5 20 20 C 1.50703 * 120.00244 * 180.02562 * 18 17 5 21 21 H 1.08999 * 109.63053 * 300.00456 * 20 18 17 22 22 C 1.53310 * 109.63412 * 179.60472 * 20 18 17 23 23 C 1.52713 * 108.56283 * 170.72817 * 22 20 18 24 24 C 1.50449 * 110.59419 * 50.72638 * 23 22 20 25 25 N 1.32901 * 118.53047 * 162.71972 * 24 23 22 26 26 C 1.31598 * 121.05528 * 179.44846 * 25 24 23 27 27 N 1.31808 * 121.67525 * 0.02562 * 26 25 24 28 28 C 1.32189 * 120.64236 * 0.11785 * 27 26 25 29 29 C 1.37761 * 122.57924 * 342.37892 * 24 23 22 30 30 C 1.50345 * 122.80129 * 0.69369 * 29 24 23 31 31 H 1.09004 * 109.46998 * 59.99563 * 1 2 3 32 32 H 1.09002 * 109.47722 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.46862 * 300.00040 * 1 2 3 34 34 H 1.09004 * 109.46862 * 239.99959 * 2 1 3 35 35 H 1.09000 * 109.47250 * 119.99983 * 2 1 3 36 36 H 1.08993 * 109.46765 * 59.99818 * 3 2 1 37 37 H 1.09000 * 109.46866 * 300.00218 * 3 2 1 38 38 H 1.08993 * 109.47839 * 60.00073 * 4 3 2 39 39 H 1.09000 * 109.47160 * 299.99635 * 4 3 2 40 40 H 1.09003 * 109.47143 * 304.99714 * 7 5 4 41 41 H 1.08996 * 109.47220 * 65.00125 * 7 5 4 42 42 H 0.96993 * 119.99952 * 359.97438 * 8 7 5 43 43 H 0.97005 * 120.00340 * 179.97438 * 12 11 9 44 44 H 0.97000 * 119.99885 * 94.99899 * 17 5 4 45 45 H 1.09005 * 109.62423 * 290.23031 * 22 20 18 46 46 H 1.08999 * 109.63276 * 50.81259 * 22 20 18 47 47 H 1.09003 * 109.12480 * 290.45140 * 23 22 20 48 48 H 1.09007 * 109.18917 * 171.03719 * 23 22 20 49 49 H 1.08001 * 119.16048 * 180.02562 * 26 25 24 50 50 H 1.08007 * 120.36466 * 179.97438 * 28 27 26 51 51 H 1.09000 * 109.30832 * 222.10599 * 30 29 24 52 52 H 1.08998 * 109.14480 * 102.59522 * 30 29 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0800 2.8850 0.0000 6 1 3.6451 3.4244 -0.8413 7 6 5.6048 2.8868 -0.1263 8 7 6.1031 4.2592 -0.0059 9 6 7.4470 4.5094 -0.0884 10 1 8.1395 3.6950 -0.2419 11 6 7.9190 5.8098 0.0251 12 7 7.0752 6.8022 0.2127 13 14 9.7522 6.1510 -0.0867 14 1 10.1231 6.4043 -1.5022 15 1 10.0847 7.3437 0.7331 16 1 10.5062 4.9763 0.4200 17 7 3.6930 3.5392 1.2523 18 6 2.4758 4.1061 1.3683 19 8 1.7007 4.0743 0.4359 20 6 2.0778 4.7796 2.6564 21 1 2.1086 4.0572 3.4720 22 6 0.6598 5.3472 2.5241 23 6 0.1931 5.8150 3.9009 24 6 1.2239 6.7100 4.5333 25 7 0.8568 7.4797 5.5526 26 6 1.7204 8.2733 6.1495 27 7 2.9795 8.3400 5.7652 28 6 3.4158 7.6054 4.7565 29 6 2.5313 6.7564 4.1013 30 6 3.0393 5.9301 2.9526 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.8932 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 1.6767 1.9563 0.8899 37 1 1.6767 1.9564 -0.8900 38 1 3.9330 0.9287 -0.8908 39 1 3.9337 0.9285 0.8891 40 1 6.0357 2.2731 0.6649 41 1 5.8895 2.4807 -1.0969 42 1 5.4812 4.9906 0.1316 43 1 7.4051 7.7110 0.2924 44 1 4.3128 3.5644 1.9981 45 1 0.6667 6.1931 1.8367 46 1 -0.0110 4.5736 2.1506 47 1 0.0315 4.9453 4.5378 48 1 -0.7433 6.3629 3.7947 49 1 1.3891 8.8854 6.9753 50 1 4.4483 7.6639 4.4450 51 1 4.0190 5.5249 3.2057 52 1 3.1279 6.5623 2.0692 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717530523.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:51 Heat of formation + Delta-G solvation = -11.553317 kcal Electronic energy + Delta-G solvation = -31260.355521 eV Core-core repulsion = 27258.726414 eV Total energy + Delta-G solvation = -4001.629107 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.44516 -39.96012 -37.31980 -36.11327 -34.94928 -34.13899 -33.54213 -31.65598 -31.43013 -30.52681 -29.87471 -27.26246 -25.38637 -24.41689 -24.10190 -23.05735 -22.32071 -21.57708 -20.76234 -20.26550 -19.64251 -17.89584 -17.28344 -17.03721 -16.59080 -16.30732 -15.34265 -15.32452 -14.98259 -14.66718 -14.41597 -14.11806 -13.98947 -13.88545 -13.80334 -13.45025 -13.34209 -13.25480 -12.97029 -12.75875 -12.70960 -12.29564 -12.13494 -11.92272 -11.86017 -11.34449 -11.23325 -11.10943 -11.02689 -10.97568 -10.91996 -10.83845 -10.75127 -10.45795 -10.39228 -10.32994 -10.05965 -9.78230 -9.46581 -9.26573 -9.23811 -8.97020 -8.64005 -7.01925 -5.84549 -3.13835 0.84312 0.97711 2.86936 3.38274 3.43485 3.45025 3.45565 3.67514 3.88743 4.15521 4.36613 4.47854 4.51054 4.57749 4.71962 4.84105 4.92841 5.03670 5.14861 5.16271 5.22369 5.28086 5.33633 5.38654 5.44197 5.44715 5.49812 5.52955 5.60337 5.69884 5.79501 5.81578 5.86178 5.92427 5.94889 5.99719 6.01990 6.04612 6.13453 6.16113 6.19705 6.27515 6.38342 6.43300 6.45480 6.60439 6.67505 6.91562 6.93205 7.62921 7.83717 8.01345 8.33610 8.51531 9.46058 10.01129 10.37049 11.37602 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.005792 B = 0.004570 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4833.109960 B = 6125.353481 C =10594.475117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.126 4.126 3 C -0.111 4.111 4 C -0.127 4.127 5 C 0.138 3.862 6 H 0.087 0.913 7 C 0.144 3.856 8 N -0.730 5.730 9 C -0.243 4.243 10 H 0.070 0.930 11 C -0.009 4.009 12 N -0.930 5.930 13 Si 0.905 3.095 14 H -0.290 1.290 15 H -0.291 1.291 16 H -0.282 1.282 17 N -0.708 5.708 18 C 0.520 3.480 19 O -0.539 6.539 20 C -0.107 4.107 21 H 0.097 0.903 22 C -0.098 4.098 23 C -0.071 4.071 24 C 0.176 3.824 25 N -0.525 5.525 26 C 0.283 3.717 27 N -0.522 5.522 28 C 0.155 3.845 29 C -0.170 4.170 30 C -0.066 4.066 31 H 0.053 0.947 32 H 0.047 0.953 33 H 0.051 0.949 34 H 0.057 0.943 35 H 0.055 0.945 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.061 0.939 40 H 0.024 0.976 41 H 0.032 0.968 42 H 0.386 0.614 43 H 0.255 0.745 44 H 0.403 0.597 45 H 0.075 0.925 46 H 0.087 0.913 47 H 0.089 0.911 48 H 0.092 0.908 49 H 0.193 0.807 50 H 0.174 0.826 51 H 0.093 0.907 52 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.047 -7.077 8.033 17.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.163 4.163 3 C -0.148 4.148 4 C -0.166 4.166 5 C 0.033 3.967 6 H 0.105 0.895 7 C 0.016 3.984 8 N -0.375 5.375 9 C -0.374 4.374 10 H 0.088 0.912 11 C -0.206 4.206 12 N -0.579 5.579 13 Si 0.736 3.264 14 H -0.217 1.217 15 H -0.218 1.218 16 H -0.208 1.208 17 N -0.359 5.359 18 C 0.306 3.694 19 O -0.416 6.416 20 C -0.128 4.128 21 H 0.115 0.885 22 C -0.136 4.136 23 C -0.109 4.109 24 C 0.031 3.969 25 N -0.239 5.239 26 C -0.005 4.005 27 N -0.235 5.235 28 C -0.012 4.012 29 C -0.174 4.174 30 C -0.105 4.105 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.088 0.912 39 H 0.080 0.920 40 H 0.041 0.959 41 H 0.050 0.950 42 H 0.220 0.780 43 H 0.065 0.935 44 H 0.237 0.763 45 H 0.094 0.906 46 H 0.105 0.895 47 H 0.107 0.893 48 H 0.111 0.889 49 H 0.209 0.791 50 H 0.191 0.809 51 H 0.112 0.888 52 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -14.725 -6.552 8.116 18.045 hybrid contribution 1.635 0.150 -0.256 1.662 sum -13.091 -6.402 7.860 16.557 Atomic orbital electron populations 1.21740 0.96249 1.00839 1.01846 1.21579 0.95625 0.97800 1.01330 1.21660 0.94747 0.95258 1.03179 1.21976 0.96101 0.96373 1.02119 1.21290 0.95948 0.92427 0.87026 0.89517 1.20964 0.89352 0.89369 0.98740 1.42327 1.05361 1.01997 1.87844 1.19206 0.83658 0.92491 1.42037 0.91225 1.24704 0.97573 0.95641 1.02642 1.69647 1.32846 0.98991 1.56367 0.86227 0.85211 0.77418 0.77521 1.21733 1.21759 1.20790 1.45988 1.15972 1.56880 1.17012 1.20259 0.81890 0.78093 0.89142 1.90690 1.51388 1.59228 1.40301 1.21348 0.96990 0.97765 0.96745 0.88529 1.21398 0.94702 1.01960 0.95571 1.20430 0.96550 0.97813 0.96088 1.21343 0.92532 0.92522 0.90459 1.68367 1.38921 1.07390 1.09192 1.24845 0.85110 0.93430 0.97139 1.68432 1.17622 1.22897 1.14594 1.23448 1.00650 0.88337 0.88782 1.21157 0.95227 1.00799 1.00196 1.20336 0.98648 0.95282 0.96197 0.92793 0.93353 0.92972 0.92468 0.92652 0.91772 0.91558 0.91239 0.92036 0.95855 0.95003 0.78012 0.93505 0.76265 0.90621 0.89467 0.89251 0.88932 0.79061 0.80935 0.88828 0.88569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.91 37.15 0.37 -1.10 16 2 C -0.13 -1.33 5.93 -26.73 -0.16 -1.49 16 3 C -0.11 -1.39 3.82 -26.73 -0.10 -1.49 16 4 C -0.13 -1.60 4.89 -26.73 -0.13 -1.73 16 5 C 0.14 2.10 2.42 -67.93 -0.16 1.93 16 6 H 0.09 1.53 7.58 -51.93 -0.39 1.14 16 7 C 0.14 2.61 5.82 -4.04 -0.02 2.58 16 8 N -0.73 -16.91 5.43 -59.91 -0.33 -17.24 16 9 C -0.24 -6.38 9.99 -15.06 -0.15 -6.53 16 10 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 11 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 12 N -0.93 -26.44 13.06 55.49 0.72 -25.71 16 13 Si 0.91 21.54 29.55 -169.99 -5.02 16.52 16 14 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 15 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 16 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 17 N -0.71 -9.84 4.38 -53.81 -0.24 -10.07 16 18 C 0.52 7.17 5.71 -10.98 -0.06 7.11 16 19 O -0.54 -8.83 12.99 5.55 0.07 -8.76 16 20 C -0.11 -1.18 2.54 -91.70 -0.23 -1.41 16 21 H 0.10 0.90 8.11 -51.93 -0.42 0.48 16 22 C -0.10 -1.03 4.71 -26.72 -0.13 -1.15 16 23 C -0.07 -0.68 5.95 -28.15 -0.17 -0.85 16 24 C 0.18 2.09 6.63 -82.43 -0.55 1.54 16 25 N -0.52 -6.54 10.32 -11.00 -0.11 -6.66 16 26 C 0.28 3.34 12.29 -92.31 -1.13 2.21 16 27 N -0.52 -6.90 10.44 -14.55 -0.15 -7.05 16 28 C 0.15 1.97 10.94 -17.11 -0.19 1.79 16 29 C -0.17 -2.06 5.74 -104.68 -0.60 -2.66 16 30 C -0.07 -0.79 4.89 -28.14 -0.14 -0.93 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.86 5.64 -51.93 -0.29 0.57 16 37 H 0.07 0.95 7.85 -51.93 -0.41 0.54 16 38 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.39 9.44 7.33 -40.82 -0.30 9.14 16 43 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 44 H 0.40 5.34 8.25 -40.82 -0.34 5.01 16 45 H 0.08 0.89 8.10 -51.93 -0.42 0.47 16 46 H 0.09 0.90 7.81 -51.93 -0.41 0.49 16 47 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 48 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 49 H 0.19 1.61 8.06 -52.49 -0.42 1.19 16 50 H 0.17 2.02 8.06 -52.48 -0.42 1.60 16 51 H 0.09 1.10 7.85 -51.93 -0.41 0.70 16 52 H 0.10 1.34 8.11 -51.93 -0.42 0.92 16 LS Contribution 413.60 15.07 6.23 6.23 Total: -1.00 -30.75 413.60 -11.32 -42.07 By element: Atomic # 1 Polarization: 22.03 SS G_CDS: -8.85 Total: 13.18 kcal Atomic # 6 Polarization: 1.13 SS G_CDS: -3.65 Total: -2.53 kcal Atomic # 7 Polarization: -66.62 SS G_CDS: -0.10 Total: -66.72 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: 0.07 Total: -8.76 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -30.75 -11.32 -42.07 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717530523.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.516 kcal (2) G-P(sol) polarization free energy of solvation -30.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds