Wall clock time and date at job start Wed Apr 1 2020 04:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47361 * 2 1 4 4 N 1.46502 * 109.47181 * 120.00350 * 2 1 3 5 5 C 1.38457 * 119.99961 * 154.72507 * 4 2 1 6 6 C 1.39394 * 119.54015 * 359.97438 * 5 4 2 7 7 C 1.36854 * 119.37888 * 179.97438 * 6 5 4 8 8 C 1.40352 * 118.49418 * 359.97438 * 7 6 5 9 9 C 1.47540 * 120.47649 * 179.97438 * 8 7 6 10 10 O 1.21594 * 120.00288 * 359.97438 * 9 8 7 11 11 N 1.34778 * 120.00126 * 180.02562 * 9 8 7 12 12 C 1.46504 * 120.00084 * 179.97438 * 11 9 8 13 13 C 1.52995 * 109.47084 * 179.97438 * 12 11 9 14 14 C 1.53042 * 109.46324 * 295.03200 * 13 12 11 15 15 C 1.53187 * 109.31657 * 178.60135 * 14 13 12 16 16 N 1.46930 * 108.76755 * 54.65138 * 15 14 13 17 17 C 1.36931 * 120.63299 * 126.40109 * 16 15 14 18 18 H 1.08003 * 120.00370 * 331.84063 * 17 16 15 19 19 C 1.38816 * 120.00074 * 151.82602 * 17 16 15 20 20 N 1.31617 * 119.99903 * 343.08049 * 19 17 16 21 21 Si 1.86797 * 119.99968 * 163.07291 * 19 17 16 22 22 H 1.48501 * 109.47260 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.47192 * 120.00585 * 21 19 17 24 24 H 1.48501 * 109.47393 * 240.00589 * 21 19 17 25 25 C 1.46925 * 118.73945 * 306.39062 * 16 15 14 26 26 C 1.53038 * 109.46204 * 174.97552 * 13 12 11 27 27 C 1.39562 * 119.04949 * 0.02562 * 8 7 6 28 28 N 1.31678 * 120.51354 * 359.74724 * 27 8 7 29 29 H 1.08998 * 109.47158 * 299.99786 * 1 2 3 30 30 H 1.08999 * 109.47249 * 59.99972 * 1 2 3 31 31 H 1.09007 * 109.47416 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46820 * 239.99822 * 2 1 3 33 33 H 1.08999 * 109.46962 * 300.00203 * 3 2 1 34 34 H 1.08998 * 109.46810 * 60.00001 * 3 2 1 35 35 H 1.08999 * 109.46949 * 180.02562 * 3 2 1 36 36 H 0.96998 * 120.00197 * 334.99597 * 4 2 1 37 37 H 1.07992 * 120.31267 * 359.96072 * 6 5 4 38 38 H 1.07995 * 120.75767 * 180.02562 * 7 6 5 39 39 H 0.96999 * 119.99689 * 0.02562 * 11 9 8 40 40 H 1.08996 * 109.47501 * 300.00314 * 12 11 9 41 41 H 1.09000 * 109.46579 * 59.99930 * 12 11 9 42 42 H 1.09004 * 109.46077 * 55.00141 * 13 12 11 43 43 H 1.09001 * 109.49433 * 298.56827 * 14 13 12 44 44 H 1.09001 * 109.50026 * 58.65868 * 14 13 12 45 45 H 1.08997 * 109.60016 * 294.86724 * 15 14 13 46 46 H 1.08999 * 109.70621 * 174.50218 * 15 14 13 47 47 H 0.96999 * 119.99894 * 179.97438 * 20 19 17 48 48 H 1.09004 * 109.58325 * 293.82102 * 25 16 15 49 49 H 1.08993 * 109.70546 * 173.46063 * 25 16 15 50 50 H 1.09000 * 109.49827 * 301.34020 * 26 13 12 51 51 H 1.09004 * 109.49624 * 61.40138 * 26 13 12 52 52 H 1.07995 * 119.74000 * 179.97438 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 3.2714 -1.2797 1.1923 6 6 4.0600 -1.2102 0.0450 7 6 5.2982 -1.7930 0.0451 8 6 5.7317 -2.4441 1.2104 9 6 7.0584 -3.0877 1.2585 10 8 7.7849 -3.0569 0.2839 11 7 7.4649 -3.7108 2.3824 12 6 8.7821 -4.3503 2.4300 13 6 8.9943 -4.9788 3.8087 14 6 9.0398 -3.8770 4.8698 15 6 9.2174 -4.5121 6.2525 16 7 10.4066 -5.3747 6.2272 17 6 11.4025 -5.2173 7.1537 18 1 11.5776 -4.2492 7.5993 19 6 12.1869 -6.3022 7.5206 20 7 11.7846 -7.5262 7.2515 21 14 13.8136 -6.0250 8.3960 22 1 14.0348 -4.5682 8.5801 23 1 13.7819 -6.6920 9.7224 24 1 14.9173 -6.5946 7.5819 25 6 10.5068 -6.4095 5.1890 26 6 10.3143 -5.7531 3.8183 27 6 4.8893 -2.4749 2.3227 28 7 3.7067 -1.8973 2.2820 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8932 -0.5139 -0.8900 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9562 0.8900 35 1 3.1300 1.4424 -0.0005 36 1 1.4622 -0.7388 1.9894 37 1 3.6972 -0.7013 -0.8357 38 1 5.9278 -1.7522 -0.8314 39 1 6.8849 -3.7363 3.1595 40 1 8.8379 -5.1246 1.6648 41 1 9.5552 -3.6037 2.2485 42 1 8.1721 -5.6601 4.0277 43 1 9.8771 -3.2096 4.6655 44 1 8.1087 -3.3108 4.8466 45 1 8.3385 -5.1087 6.4964 46 1 9.3484 -3.7312 7.0016 47 1 12.3329 -8.2842 7.5075 48 1 9.7328 -7.1608 5.3462 49 1 11.4884 -6.8811 5.2338 50 1 10.2905 -6.5225 3.0466 51 1 11.1394 -5.0679 3.6235 52 1 5.2115 -2.9732 3.2251 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084405204.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:18 Heat of formation + Delta-G solvation = 11.677134 kcal Electronic energy + Delta-G solvation = -29629.733772 eV Core-core repulsion = 25629.112013 eV Total energy + Delta-G solvation = -4000.621759 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 2.05 seconds Orbital eigenvalues (eV) -40.89965 -39.41314 -37.83458 -37.33543 -34.96436 -33.22772 -32.90055 -32.28942 -30.85029 -29.85674 -29.36920 -27.83400 -26.72833 -24.50325 -24.14811 -23.24819 -22.20912 -21.61977 -21.05337 -20.43613 -19.12371 -18.46529 -17.55546 -17.24078 -16.67388 -15.85746 -15.52457 -15.32452 -15.07496 -14.88333 -14.81606 -14.34565 -14.10052 -13.93289 -13.54996 -13.47576 -13.40618 -13.22940 -13.12605 -13.09902 -12.81807 -12.51932 -12.32301 -12.28629 -12.02287 -11.84251 -11.63312 -11.31278 -10.97650 -10.71861 -10.62961 -10.47380 -10.29436 -10.19214 -10.15874 -10.15053 -9.89505 -9.65075 -9.51823 -9.40015 -8.97804 -8.45146 -8.13434 -6.64473 -5.76976 -3.19221 0.65241 1.05877 2.59864 2.87132 3.23187 3.38620 3.46688 3.48861 3.74530 4.10824 4.26796 4.41591 4.50411 4.51647 4.56890 4.67651 4.77265 4.91445 4.98048 5.12474 5.15017 5.18956 5.25742 5.28054 5.32934 5.40666 5.44118 5.47437 5.62896 5.65090 5.67913 5.89255 5.90113 5.99292 6.08600 6.09778 6.18184 6.35019 6.45480 6.50097 6.55761 6.63030 6.71966 6.79330 6.84222 7.00835 7.06704 7.39306 7.54968 7.68487 7.73867 7.82076 8.25051 8.47535 9.23856 9.87428 10.44150 11.31523 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.025978 B = 0.001696 C = 0.001645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.592085 B =16502.715263 C =17017.083438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.142 3.858 3 C -0.172 4.172 4 N -0.713 5.713 5 C 0.423 3.577 6 C -0.249 4.249 7 C 0.025 3.975 8 C -0.250 4.250 9 C 0.567 3.433 10 O -0.548 6.548 11 N -0.722 5.722 12 C 0.124 3.876 13 C -0.091 4.091 14 C -0.127 4.127 15 C 0.145 3.855 16 N -0.592 5.592 17 C -0.251 4.251 18 H 0.065 0.935 19 C 0.001 3.999 20 N -0.903 5.903 21 Si 0.901 3.099 22 H -0.278 1.278 23 H -0.291 1.291 24 H -0.289 1.289 25 C 0.172 3.828 26 C -0.133 4.133 27 C 0.191 3.809 28 N -0.548 5.548 29 H 0.063 0.937 30 H 0.075 0.925 31 H 0.064 0.936 32 H 0.085 0.915 33 H 0.068 0.932 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.406 0.594 37 H 0.137 0.863 38 H 0.144 0.856 39 H 0.398 0.602 40 H 0.065 0.935 41 H 0.067 0.933 42 H 0.069 0.931 43 H 0.060 0.940 44 H 0.046 0.954 45 H 0.016 0.984 46 H 0.053 0.947 47 H 0.253 0.747 48 H 0.017 0.983 49 H 0.087 0.913 50 H 0.051 0.949 51 H 0.057 0.943 52 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.672 14.552 -16.348 31.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.037 3.963 3 C -0.230 4.230 4 N -0.345 5.345 5 C 0.186 3.814 6 C -0.274 4.274 7 C -0.001 4.001 8 C -0.258 4.258 9 C 0.354 3.646 10 O -0.427 6.427 11 N -0.373 5.373 12 C 0.001 3.999 13 C -0.110 4.110 14 C -0.167 4.167 15 C 0.019 3.981 16 N -0.315 5.315 17 C -0.380 4.380 18 H 0.083 0.917 19 C -0.197 4.197 20 N -0.548 5.548 21 Si 0.731 3.269 22 H -0.203 1.203 23 H -0.218 1.218 24 H -0.216 1.216 25 C 0.046 3.954 26 C -0.172 4.172 27 C 0.031 3.969 28 N -0.265 5.265 29 H 0.082 0.918 30 H 0.094 0.906 31 H 0.083 0.917 32 H 0.103 0.897 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.242 0.758 37 H 0.154 0.846 38 H 0.162 0.838 39 H 0.234 0.766 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.087 0.913 43 H 0.079 0.921 44 H 0.065 0.935 45 H 0.034 0.966 46 H 0.071 0.929 47 H 0.063 0.937 48 H 0.035 0.965 49 H 0.106 0.894 50 H 0.069 0.931 51 H 0.076 0.924 52 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -22.650 14.502 -16.440 31.521 hybrid contribution 0.858 0.043 0.479 0.984 sum -21.792 14.545 -15.961 30.678 Atomic orbital electron populations 1.22068 0.93653 1.02972 1.03200 1.21053 0.94623 0.92760 0.87840 1.22322 1.02162 0.95909 1.02627 1.44631 1.14931 1.58086 1.16813 1.18547 0.86043 0.87522 0.89266 1.21142 0.96703 1.10089 0.99422 1.21156 0.93663 0.88456 0.96869 1.20654 0.97712 1.09978 0.97481 1.17924 0.85643 0.78110 0.82948 1.90763 1.55945 1.60636 1.35314 1.46001 1.19787 1.56372 1.15127 1.21593 0.83136 0.96796 0.98337 1.21321 0.99738 0.97515 0.92396 1.22077 1.00088 0.97098 0.97393 1.20891 0.90162 0.93634 0.93459 1.44052 1.17973 1.38022 1.31461 1.19228 1.08197 0.93512 1.17111 0.91724 1.25040 1.00211 0.95122 0.99325 1.70038 1.36885 0.97154 1.50690 0.86245 0.84094 0.77638 0.78931 1.20280 1.21780 1.21568 1.20758 1.01917 0.89424 0.83320 1.22175 0.95224 0.98974 1.00865 1.22662 0.87132 0.90645 0.96491 1.67239 1.17324 1.15289 1.26663 0.91823 0.90626 0.91731 0.89729 0.91328 0.92036 0.91975 0.75821 0.84572 0.83819 0.76650 0.91681 0.91502 0.91266 0.92132 0.93494 0.96588 0.92893 0.93720 0.96456 0.89433 0.93054 0.92382 0.82346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.45 9.38 37.16 0.35 -0.10 16 2 C 0.14 0.60 2.86 -67.93 -0.19 0.41 16 3 C -0.17 -0.70 9.41 37.16 0.35 -0.35 16 4 N -0.71 -4.65 5.22 -53.96 -0.28 -4.93 16 5 C 0.42 3.90 7.62 -155.28 -1.18 2.72 16 6 C -0.25 -2.14 8.77 -39.65 -0.35 -2.49 16 7 C 0.02 0.25 9.65 -39.29 -0.38 -0.13 16 8 C -0.25 -2.88 5.89 -104.82 -0.62 -3.49 16 9 C 0.57 7.83 7.77 -12.47 -0.10 7.73 16 10 O -0.55 -9.44 16.41 5.28 0.09 -9.35 16 11 N -0.72 -9.05 5.22 -61.35 -0.32 -9.37 16 12 C 0.12 1.78 5.06 -4.04 -0.02 1.76 16 13 C -0.09 -1.42 2.19 -90.58 -0.20 -1.62 16 14 C -0.13 -2.08 5.25 -26.61 -0.14 -2.22 16 15 C 0.15 2.95 6.52 -3.71 -0.02 2.92 16 16 N -0.59 -14.64 2.99 -172.32 -0.52 -15.15 16 17 C -0.25 -6.87 9.58 -15.06 -0.14 -7.01 16 18 H 0.07 1.75 7.89 -52.48 -0.41 1.34 16 19 C 0.00 0.04 4.92 -17.43 -0.09 -0.05 16 20 N -0.90 -26.17 11.19 55.49 0.62 -25.55 16 21 Si 0.90 21.74 29.59 -169.99 -5.03 16.71 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 25 C 0.17 4.02 5.30 -3.71 -0.02 4.00 16 26 C -0.13 -2.45 5.36 -26.61 -0.14 -2.59 16 27 C 0.19 1.98 10.71 -17.12 -0.18 1.79 16 28 N -0.55 -5.87 10.38 -12.14 -0.13 -6.00 16 29 H 0.06 0.17 8.14 -51.93 -0.42 -0.26 16 30 H 0.07 0.13 8.14 -51.93 -0.42 -0.29 16 31 H 0.06 0.21 8.14 -51.93 -0.42 -0.22 16 32 H 0.08 0.34 6.41 -51.93 -0.33 0.01 16 33 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 34 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.06 0.33 7.67 -51.93 -0.40 -0.06 16 36 H 0.41 2.42 8.72 -40.82 -0.36 2.07 16 37 H 0.14 0.84 6.03 -52.49 -0.32 0.53 16 38 H 0.14 1.42 7.73 -52.49 -0.41 1.01 16 39 H 0.40 4.11 5.70 -40.82 -0.23 3.88 16 40 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.05 0.63 7.15 -51.93 -0.37 0.26 16 45 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.05 1.07 7.93 -51.93 -0.41 0.65 16 47 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 48 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 49 H 0.09 2.32 6.07 -51.93 -0.31 2.00 16 50 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 51 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 52 H 0.16 1.30 6.41 -52.49 -0.34 0.97 16 LS Contribution 410.43 15.07 6.19 6.19 Total: -1.00 -32.91 410.43 -10.98 -43.89 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -8.52 Total: 2.28 kcal Atomic # 6 Polarization: 4.36 SS G_CDS: -3.08 Total: 1.28 kcal Atomic # 7 Polarization: -60.37 SS G_CDS: -0.62 Total: -61.00 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: 0.09 Total: -9.35 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.03 Total: 16.71 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -32.91 -10.98 -43.89 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084405204.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.567 kcal (2) G-P(sol) polarization free energy of solvation -32.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.05 seconds