Wall clock time and date at job start Wed Apr 1 2020 04:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47361 * 2 1 4 4 N 1.46502 * 109.47181 * 120.00350 * 2 1 3 5 5 C 1.38457 * 119.99961 * 154.72507 * 4 2 1 6 6 C 1.39394 * 119.54015 * 359.97438 * 5 4 2 7 7 C 1.36854 * 119.37888 * 179.97438 * 6 5 4 8 8 C 1.40352 * 118.49418 * 359.97438 * 7 6 5 9 9 C 1.47540 * 120.47649 * 179.97438 * 8 7 6 10 10 O 1.21594 * 120.00288 * 359.97438 * 9 8 7 11 11 N 1.34778 * 120.00126 * 180.02562 * 9 8 7 12 12 C 1.46504 * 120.00084 * 179.97438 * 11 9 8 13 13 C 1.52995 * 109.47084 * 179.97438 * 12 11 9 14 14 C 1.53042 * 109.46324 * 295.03200 * 13 12 11 15 15 C 1.53187 * 109.31657 * 178.60135 * 14 13 12 16 16 N 1.46930 * 108.76755 * 54.65138 * 15 14 13 17 17 C 1.36931 * 120.63299 * 126.40109 * 16 15 14 18 18 H 1.08003 * 120.00370 * 331.84063 * 17 16 15 19 19 C 1.38816 * 120.00074 * 151.82602 * 17 16 15 20 20 N 1.31617 * 119.99903 * 343.08049 * 19 17 16 21 21 Si 1.86797 * 119.99968 * 163.07291 * 19 17 16 22 22 H 1.48501 * 109.47260 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.47192 * 120.00585 * 21 19 17 24 24 H 1.48501 * 109.47393 * 240.00589 * 21 19 17 25 25 C 1.46925 * 118.73945 * 306.39062 * 16 15 14 26 26 C 1.53038 * 109.46204 * 174.97552 * 13 12 11 27 27 C 1.39562 * 119.04949 * 0.02562 * 8 7 6 28 28 N 1.31678 * 120.51354 * 359.74724 * 27 8 7 29 29 H 1.08998 * 109.47158 * 299.99786 * 1 2 3 30 30 H 1.08999 * 109.47249 * 59.99972 * 1 2 3 31 31 H 1.09007 * 109.47416 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46820 * 239.99822 * 2 1 3 33 33 H 1.08999 * 109.46962 * 300.00203 * 3 2 1 34 34 H 1.08998 * 109.46810 * 60.00001 * 3 2 1 35 35 H 1.08999 * 109.46949 * 180.02562 * 3 2 1 36 36 H 0.96998 * 120.00197 * 334.99597 * 4 2 1 37 37 H 1.07992 * 120.31267 * 359.96072 * 6 5 4 38 38 H 1.07995 * 120.75767 * 180.02562 * 7 6 5 39 39 H 0.96999 * 119.99689 * 0.02562 * 11 9 8 40 40 H 1.08996 * 109.47501 * 300.00314 * 12 11 9 41 41 H 1.09000 * 109.46579 * 59.99930 * 12 11 9 42 42 H 1.09004 * 109.46077 * 55.00141 * 13 12 11 43 43 H 1.09001 * 109.49433 * 298.56827 * 14 13 12 44 44 H 1.09001 * 109.50026 * 58.65868 * 14 13 12 45 45 H 1.08997 * 109.60016 * 294.86724 * 15 14 13 46 46 H 1.08999 * 109.70621 * 174.50218 * 15 14 13 47 47 H 0.96999 * 119.99894 * 179.97438 * 20 19 17 48 48 H 1.09004 * 109.58325 * 293.82102 * 25 16 15 49 49 H 1.08993 * 109.70546 * 173.46063 * 25 16 15 50 50 H 1.09000 * 109.49827 * 301.34020 * 26 13 12 51 51 H 1.09004 * 109.49624 * 61.40138 * 26 13 12 52 52 H 1.07995 * 119.74000 * 179.97438 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 3.2714 -1.2797 1.1923 6 6 4.0600 -1.2102 0.0450 7 6 5.2982 -1.7930 0.0451 8 6 5.7317 -2.4441 1.2104 9 6 7.0584 -3.0877 1.2585 10 8 7.7849 -3.0569 0.2839 11 7 7.4649 -3.7108 2.3824 12 6 8.7821 -4.3503 2.4300 13 6 8.9943 -4.9788 3.8087 14 6 9.0398 -3.8770 4.8698 15 6 9.2174 -4.5121 6.2525 16 7 10.4066 -5.3747 6.2272 17 6 11.4025 -5.2173 7.1537 18 1 11.5776 -4.2492 7.5993 19 6 12.1869 -6.3022 7.5206 20 7 11.7846 -7.5262 7.2515 21 14 13.8136 -6.0250 8.3960 22 1 14.0348 -4.5682 8.5801 23 1 13.7819 -6.6920 9.7224 24 1 14.9173 -6.5946 7.5819 25 6 10.5068 -6.4095 5.1890 26 6 10.3143 -5.7531 3.8183 27 6 4.8893 -2.4749 2.3227 28 7 3.7067 -1.8973 2.2820 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8932 -0.5139 -0.8900 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9562 0.8900 35 1 3.1300 1.4424 -0.0005 36 1 1.4622 -0.7388 1.9894 37 1 3.6972 -0.7013 -0.8357 38 1 5.9278 -1.7522 -0.8314 39 1 6.8849 -3.7363 3.1595 40 1 8.8379 -5.1246 1.6648 41 1 9.5552 -3.6037 2.2485 42 1 8.1721 -5.6601 4.0277 43 1 9.8771 -3.2096 4.6655 44 1 8.1087 -3.3108 4.8466 45 1 8.3385 -5.1087 6.4964 46 1 9.3484 -3.7312 7.0016 47 1 12.3329 -8.2842 7.5075 48 1 9.7328 -7.1608 5.3462 49 1 11.4884 -6.8811 5.2338 50 1 10.2905 -6.5225 3.0466 51 1 11.1394 -5.0679 3.6235 52 1 5.2115 -2.9732 3.2251 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084405204.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:17 Heat of formation + Delta-G solvation = -8.678219 kcal Electronic energy + Delta-G solvation = -29630.616446 eV Core-core repulsion = 25629.112013 eV Total energy + Delta-G solvation = -4001.504434 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -41.68744 -40.42671 -39.27282 -37.93267 -36.40950 -34.54906 -33.82690 -33.05901 -32.45634 -31.40929 -30.30672 -28.31221 -28.02087 -25.89330 -25.06335 -24.26643 -23.73519 -22.60126 -22.18233 -21.34330 -20.66637 -19.25147 -18.69083 -18.30781 -17.93101 -16.86405 -16.66579 -16.38244 -16.16237 -15.80783 -15.70393 -15.50691 -15.28151 -15.09040 -15.01516 -14.76355 -14.53676 -14.10876 -14.02010 -13.90019 -13.76965 -13.71526 -13.39539 -13.06611 -12.99502 -12.90674 -12.79307 -12.57818 -12.36022 -12.22275 -11.98506 -11.96260 -11.82023 -11.60501 -11.34093 -11.26053 -11.10147 -11.03821 -10.87170 -10.53083 -10.45401 -10.08812 -8.78314 -8.64633 -7.85763 -5.30443 -0.13672 0.33013 1.45917 1.48295 1.58346 1.92268 2.06103 2.20833 2.52394 2.94560 3.28725 3.49482 3.73547 3.80443 3.85189 3.90010 3.90989 3.97339 4.01085 4.08050 4.12176 4.19402 4.33153 4.54819 4.56962 4.65986 4.72445 4.75812 4.76235 4.80759 4.84464 4.89308 4.94864 4.96694 4.98790 5.04523 5.16026 5.22004 5.27614 5.31420 5.32562 5.35875 5.39741 5.43954 5.48631 5.57934 5.68246 5.81748 5.97715 6.41832 6.48086 6.56098 7.05076 7.17756 7.23643 7.90306 8.40871 9.20404 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.025978 B = 0.001696 C = 0.001645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.592085 B =16502.715263 C =17017.083438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.138 3.862 3 C -0.168 4.168 4 N -0.705 5.705 5 C 0.419 3.581 6 C -0.243 4.243 7 C 0.016 3.984 8 C -0.269 4.269 9 C 0.568 3.432 10 O -0.588 6.588 11 N -0.712 5.712 12 C 0.137 3.863 13 C -0.079 4.079 14 C -0.115 4.115 15 C 0.139 3.861 16 N -0.612 5.612 17 C -0.260 4.260 18 H 0.064 0.936 19 C -0.051 4.051 20 N -0.934 5.934 21 Si 0.964 3.036 22 H -0.268 1.268 23 H -0.292 1.292 24 H -0.291 1.291 25 C 0.177 3.823 26 C -0.122 4.122 27 C 0.194 3.806 28 N -0.567 5.567 29 H 0.065 0.935 30 H 0.089 0.911 31 H 0.060 0.940 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.057 0.943 35 H 0.048 0.952 36 H 0.409 0.591 37 H 0.160 0.840 38 H 0.143 0.857 39 H 0.411 0.589 40 H 0.064 0.936 41 H 0.057 0.943 42 H 0.078 0.922 43 H 0.050 0.950 44 H 0.084 0.916 45 H 0.019 0.981 46 H 0.051 0.949 47 H 0.249 0.751 48 H -0.001 1.001 49 H 0.050 0.950 50 H 0.069 0.931 51 H 0.050 0.950 52 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.756 16.367 -17.232 34.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.034 3.966 3 C -0.227 4.227 4 N -0.334 5.334 5 C 0.180 3.820 6 C -0.268 4.268 7 C -0.009 4.009 8 C -0.277 4.277 9 C 0.357 3.643 10 O -0.470 6.470 11 N -0.364 5.364 12 C 0.014 3.986 13 C -0.097 4.097 14 C -0.154 4.154 15 C 0.014 3.986 16 N -0.335 5.335 17 C -0.391 4.391 18 H 0.082 0.918 19 C -0.246 4.246 20 N -0.581 5.581 21 Si 0.792 3.208 22 H -0.192 1.192 23 H -0.219 1.219 24 H -0.218 1.218 25 C 0.052 3.948 26 C -0.162 4.162 27 C 0.034 3.966 28 N -0.285 5.285 29 H 0.084 0.916 30 H 0.108 0.892 31 H 0.079 0.921 32 H 0.108 0.892 33 H 0.104 0.896 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.245 0.755 37 H 0.177 0.823 38 H 0.161 0.839 39 H 0.248 0.752 40 H 0.082 0.918 41 H 0.076 0.924 42 H 0.097 0.903 43 H 0.069 0.931 44 H 0.103 0.897 45 H 0.037 0.963 46 H 0.069 0.931 47 H 0.058 0.942 48 H 0.017 0.983 49 H 0.069 0.931 50 H 0.088 0.912 51 H 0.069 0.931 52 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -24.801 16.361 -17.317 34.389 hybrid contribution 1.348 -0.452 0.754 1.609 sum -23.452 15.909 -16.563 32.825 Atomic orbital electron populations 1.22043 0.92296 1.03022 1.04062 1.21266 0.95663 0.92645 0.87040 1.22294 1.01259 0.95809 1.03328 1.44859 1.13914 1.56981 1.17684 1.18838 0.86867 0.87105 0.89145 1.21315 0.95891 1.09519 1.00072 1.21261 0.94374 0.88670 0.96641 1.20501 0.96980 1.11587 0.98676 1.18233 0.86087 0.77560 0.82376 1.90739 1.57255 1.62290 1.36716 1.45837 1.19217 1.55839 1.15497 1.21289 0.83851 0.96489 0.97003 1.21156 0.98275 0.97181 0.93135 1.21934 1.01605 0.97001 0.94837 1.21078 0.88522 0.93034 0.95949 1.44331 1.19079 1.38696 1.31438 1.19538 1.09010 0.93437 1.17087 0.91806 1.25762 1.03222 0.94942 1.00724 1.70181 1.37923 0.97748 1.52231 0.85261 0.80177 0.77834 0.77508 1.19219 1.21920 1.21763 1.20564 0.99186 0.89301 0.85791 1.21977 0.96740 0.99352 0.98095 1.22896 0.86819 0.90180 0.96675 1.67306 1.17542 1.16201 1.27433 0.91578 0.89176 0.92072 0.89194 0.89646 0.92378 0.93278 0.75489 0.82261 0.83947 0.75160 0.91772 0.92438 0.90339 0.93117 0.89743 0.96294 0.93068 0.94183 0.98303 0.93119 0.91248 0.93134 0.80577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.47 9.38 71.98 0.68 0.21 16 2 C 0.14 0.83 2.86 44.99 0.13 0.96 16 3 C -0.17 -1.00 9.41 71.98 0.68 -0.32 16 4 N -0.70 -7.72 5.22 -324.65 -1.70 -9.42 16 5 C 0.42 6.95 7.62 133.25 1.02 7.96 16 6 C -0.24 -3.76 8.77 22.22 0.19 -3.56 16 7 C 0.02 0.32 9.65 22.46 0.22 0.54 16 8 C -0.27 -5.87 5.89 -19.99 -0.12 -5.99 16 9 C 0.57 15.11 7.77 86.70 0.67 15.78 16 10 O -0.59 -20.08 16.41 -4.01 -0.07 -20.15 16 11 N -0.71 -16.47 5.22 -466.26 -2.44 -18.91 16 12 C 0.14 3.70 5.06 86.38 0.44 4.13 16 13 C -0.08 -2.33 2.19 -10.77 -0.02 -2.35 16 14 C -0.11 -3.53 5.25 30.67 0.16 -3.36 16 15 C 0.14 5.54 6.52 86.36 0.56 6.10 16 16 N -0.61 -30.51 2.99 -699.11 -2.09 -32.60 16 17 C -0.26 -14.43 9.58 84.04 0.81 -13.62 16 18 H 0.06 3.47 7.89 -2.91 -0.02 3.45 16 19 C -0.05 -2.89 4.92 84.86 0.42 -2.47 16 20 N -0.93 -55.66 11.19 21.65 0.24 -55.42 16 21 Si 0.96 45.39 29.59 68.60 2.03 47.42 16 22 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 23 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 24 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 25 C 0.18 8.48 5.30 86.36 0.46 8.94 16 26 C -0.12 -4.46 5.36 30.67 0.16 -4.29 16 27 C 0.19 3.69 10.71 85.04 0.91 4.60 16 28 N -0.57 -11.14 10.38 -192.33 -2.00 -13.14 16 29 H 0.07 0.19 8.14 -2.39 -0.02 0.17 16 30 H 0.09 0.05 8.14 -2.39 -0.02 0.03 16 31 H 0.06 0.25 8.14 -2.38 -0.02 0.23 16 32 H 0.09 0.48 6.41 -2.39 -0.02 0.47 16 33 H 0.08 0.23 8.14 -2.39 -0.02 0.21 16 34 H 0.06 0.39 8.14 -2.39 -0.02 0.38 16 35 H 0.05 0.44 7.67 -2.39 -0.02 0.42 16 36 H 0.41 4.08 8.72 -92.71 -0.81 3.27 16 37 H 0.16 1.60 6.03 -2.91 -0.02 1.58 16 38 H 0.14 2.76 7.73 -2.91 -0.02 2.73 16 39 H 0.41 7.34 5.70 -92.71 -0.53 6.81 16 40 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 41 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 43 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 44 H 0.08 1.99 7.15 -2.39 -0.02 1.97 16 45 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 46 H 0.05 2.02 7.93 -2.39 -0.02 2.00 16 47 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 48 H 0.00 -0.06 8.14 -2.38 -0.02 -0.08 16 49 H 0.05 2.78 6.07 -2.39 -0.01 2.77 16 50 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 51 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 52 H 0.18 2.46 6.41 -2.91 -0.02 2.44 16 Total: -1.00 -72.57 410.43 0.94 -71.63 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: -0.41 Total: 17.33 kcal Atomic # 6 Polarization: 5.89 SS G_CDS: 7.36 Total: 13.25 kcal Atomic # 7 Polarization: -121.51 SS G_CDS: -7.98 Total: -129.49 kcal Atomic # 8 Polarization: -20.08 SS G_CDS: -0.07 Total: -20.15 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -72.57 0.94 -71.63 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084405204.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.952 kcal (2) G-P(sol) polarization free energy of solvation -72.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds