Wall clock time and date at job start Wed Apr 1 2020 04:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47296 * 2 1 4 4 N 1.46495 * 109.47278 * 239.99827 * 2 1 3 5 5 C 1.38457 * 120.00207 * 205.00492 * 4 2 1 6 6 C 1.39401 * 119.53907 * 359.97438 * 5 4 2 7 7 C 1.36848 * 119.37877 * 179.97438 * 6 5 4 8 8 C 1.40352 * 118.49528 * 0.02562 * 7 6 5 9 9 C 1.47535 * 120.47295 * 179.97438 * 8 7 6 10 10 O 1.21594 * 120.00563 * 359.97438 * 9 8 7 11 11 N 1.34779 * 119.99628 * 179.97438 * 9 8 7 12 12 C 1.46502 * 120.00100 * 180.02562 * 11 9 8 13 13 C 1.52992 * 109.47338 * 179.97438 * 12 11 9 14 14 H 1.09007 * 109.49970 * 305.06214 * 13 12 11 15 15 C 1.53041 * 109.50054 * 184.99827 * 13 12 11 16 16 C 1.53037 * 109.54150 * 178.68319 * 15 13 12 17 17 C 1.53195 * 109.31288 * 61.36524 * 16 15 13 18 18 N 1.46925 * 108.77432 * 305.36407 * 17 16 15 19 19 C 1.36937 * 120.63266 * 233.58849 * 18 17 16 20 20 H 1.07998 * 120.00303 * 152.80204 * 19 18 17 21 21 C 1.38809 * 119.99810 * 332.80052 * 19 18 17 22 22 N 1.31617 * 120.00176 * 159.75378 * 21 19 18 23 23 Si 1.86804 * 120.00087 * 339.75505 * 21 19 18 24 24 H 1.48495 * 109.47419 * 94.89522 * 23 21 19 25 25 H 1.48506 * 109.47188 * 214.89792 * 23 21 19 26 26 H 1.48504 * 109.47113 * 334.89211 * 23 21 19 27 27 C 1.46926 * 118.73889 * 53.60749 * 18 17 16 28 28 C 1.39559 * 119.04963 * 359.97438 * 8 7 6 29 29 N 1.31684 * 120.51659 * 359.73025 * 28 8 7 30 30 H 1.09006 * 109.47047 * 59.99643 * 1 2 3 31 31 H 1.08995 * 109.47146 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47323 * 300.00510 * 1 2 3 33 33 H 1.09002 * 109.46663 * 119.99717 * 2 1 3 34 34 H 1.09006 * 109.46871 * 299.99968 * 3 2 1 35 35 H 1.09003 * 109.47351 * 59.99507 * 3 2 1 36 36 H 1.08998 * 109.47377 * 179.97438 * 3 2 1 37 37 H 0.97001 * 119.99906 * 25.00187 * 4 2 1 38 38 H 1.07999 * 120.30940 * 359.97438 * 6 5 4 39 39 H 1.08002 * 120.75382 * 179.97438 * 7 6 5 40 40 H 0.97004 * 120.00328 * 359.97438 * 11 9 8 41 41 H 1.09002 * 109.46918 * 299.99669 * 12 11 9 42 42 H 1.08994 * 109.47286 * 59.99349 * 12 11 9 43 43 H 1.09006 * 109.46123 * 298.70551 * 15 13 12 44 44 H 1.08995 * 109.45945 * 58.67325 * 15 13 12 45 45 H 1.09003 * 109.49834 * 181.31724 * 16 15 13 46 46 H 1.09001 * 109.49637 * 301.38375 * 16 15 13 47 47 H 1.08997 * 109.58727 * 65.15573 * 17 16 15 48 48 H 1.09005 * 109.58551 * 185.58296 * 17 16 15 49 49 H 0.96997 * 120.00295 * 179.97438 * 22 21 19 50 50 H 1.08995 * 109.58938 * 186.60145 * 27 18 17 51 51 H 1.09004 * 109.58419 * 66.17724 * 27 18 17 52 52 H 1.08000 * 119.74057 * 180.02562 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 3.2737 -1.2748 -1.1942 6 6 4.0650 -1.1995 -0.0491 7 6 5.3050 -1.7785 -0.0507 8 6 5.7376 -2.4316 -1.2153 9 6 7.0666 -3.0702 -1.2652 10 8 7.7961 -3.0327 -0.2931 11 7 7.4721 -3.6952 -2.3884 12 6 8.7916 -4.3298 -2.4379 13 6 9.0017 -4.9629 -3.8147 14 1 8.1811 -5.6475 -4.0295 15 6 10.3249 -5.7318 -3.8269 16 6 10.5203 -6.3927 -5.1933 17 6 10.5801 -5.3102 -6.2758 18 7 9.3756 -4.4749 -6.1762 19 6 8.5771 -4.2689 -7.2695 20 1 7.5262 -4.0569 -7.1384 21 6 9.1183 -4.3326 -8.5461 22 7 8.3344 -4.5348 -9.5839 23 14 10.9592 -4.1314 -8.7913 24 1 11.6021 -5.4693 -8.8336 25 1 11.2134 -3.4194 -10.0695 26 1 11.5255 -3.3454 -7.6658 27 6 9.0443 -3.8643 -4.8816 28 6 4.8925 -2.4682 -2.3253 29 7 3.7040 -1.9030 -2.2798 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9564 0.8899 36 1 3.1300 1.4425 0.0005 37 1 1.4622 -0.7387 -1.9894 38 1 3.7029 -0.6891 0.8311 39 1 5.9367 -1.7332 0.8241 40 1 6.8900 -3.7254 -3.1637 41 1 9.5624 -3.5797 -2.2610 42 1 8.8527 -5.1014 -1.6704 43 1 11.1473 -5.0423 -3.6361 44 1 10.3065 -6.4983 -3.0523 45 1 11.4515 -6.9593 -5.1936 46 1 9.6857 -7.0641 -5.3954 47 1 11.4662 -4.6931 -6.1268 48 1 10.6196 -5.7787 -7.2592 49 1 8.7125 -4.5789 -10.4760 50 1 8.0706 -3.3787 -4.9451 51 1 9.8051 -3.1293 -4.6189 52 1 5.2139 -2.9680 -3.2271 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267889546.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:37 Heat of formation + Delta-G solvation = 17.260832 kcal Electronic energy + Delta-G solvation = -30026.945373 eV Core-core repulsion = 26026.565741 eV Total energy + Delta-G solvation = -4000.379632 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.81310 -39.38421 -38.05828 -37.28897 -34.96816 -33.19533 -32.96426 -32.27899 -31.00548 -30.75778 -29.31348 -27.75216 -25.93013 -25.24959 -24.27089 -23.38913 -22.02273 -21.58090 -21.38638 -20.37614 -19.38333 -18.37486 -17.49887 -17.15285 -16.65681 -15.82578 -15.46551 -15.45056 -15.28069 -15.02077 -14.84511 -14.38000 -14.20494 -13.88968 -13.84728 -13.45833 -13.34350 -13.20054 -13.18454 -13.04122 -12.75070 -12.57806 -12.48255 -12.41461 -12.12092 -11.92969 -11.63547 -11.55785 -11.46816 -10.81585 -10.60390 -10.55906 -10.49509 -10.18864 -10.08980 -10.06292 -9.86461 -9.65188 -9.52620 -9.42456 -8.96946 -8.61814 -8.04572 -6.97616 -5.94874 -3.30861 0.74260 1.15458 2.69265 2.93416 3.26923 3.32787 3.49262 3.52083 3.83095 4.19972 4.36402 4.49188 4.53322 4.58808 4.64723 4.75699 4.82304 4.86992 4.99984 5.05179 5.17000 5.21154 5.24598 5.26182 5.30395 5.34872 5.42033 5.44419 5.54745 5.63935 5.72285 5.75745 5.79212 5.84237 6.00800 6.04738 6.11661 6.14994 6.19295 6.31302 6.39002 6.48451 6.57940 6.58942 6.65224 6.70233 6.72639 6.97806 7.16233 7.58819 7.84997 7.95333 8.28981 8.31907 8.93482 9.72012 10.09912 11.20952 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014114 B = 0.002192 C = 0.001964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.346693 B =12773.328008 C =14254.331508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.143 3.857 3 C -0.172 4.172 4 N -0.713 5.713 5 C 0.424 3.576 6 C -0.251 4.251 7 C 0.024 3.976 8 C -0.252 4.252 9 C 0.569 3.431 10 O -0.551 6.551 11 N -0.722 5.722 12 C 0.129 3.871 13 C -0.120 4.120 14 H 0.079 0.921 15 C -0.100 4.100 16 C -0.134 4.134 17 C 0.124 3.876 18 N -0.606 5.606 19 C -0.260 4.260 20 H 0.086 0.914 21 C 0.023 3.977 22 N -0.909 5.909 23 Si 0.883 3.117 24 H -0.289 1.289 25 H -0.304 1.304 26 H -0.270 1.270 27 C 0.156 3.844 28 C 0.194 3.806 29 N -0.546 5.546 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.061 0.939 35 H 0.067 0.933 36 H 0.061 0.939 37 H 0.406 0.594 38 H 0.136 0.864 39 H 0.143 0.857 40 H 0.402 0.598 41 H 0.067 0.933 42 H 0.064 0.936 43 H 0.058 0.942 44 H 0.054 0.946 45 H 0.054 0.946 46 H 0.064 0.936 47 H 0.025 0.975 48 H 0.071 0.929 49 H 0.262 0.738 50 H 0.060 0.940 51 H 0.024 0.976 52 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.058 6.885 21.747 25.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.038 3.962 3 C -0.231 4.231 4 N -0.344 5.344 5 C 0.187 3.813 6 C -0.275 4.275 7 C -0.002 4.002 8 C -0.260 4.260 9 C 0.357 3.643 10 O -0.430 6.430 11 N -0.373 5.373 12 C 0.005 3.995 13 C -0.141 4.141 14 H 0.097 0.903 15 C -0.139 4.139 16 C -0.174 4.174 17 C -0.001 4.001 18 N -0.329 5.329 19 C -0.388 4.388 20 H 0.103 0.897 21 C -0.176 4.176 22 N -0.552 5.552 23 Si 0.714 3.286 24 H -0.217 1.217 25 H -0.233 1.233 26 H -0.195 1.195 27 C 0.029 3.971 28 C 0.034 3.966 29 N -0.263 5.263 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.093 0.907 33 H 0.102 0.898 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.242 0.758 38 H 0.154 0.846 39 H 0.161 0.839 40 H 0.238 0.762 41 H 0.086 0.914 42 H 0.083 0.917 43 H 0.077 0.923 44 H 0.072 0.928 45 H 0.073 0.927 46 H 0.083 0.917 47 H 0.043 0.957 48 H 0.089 0.911 49 H 0.072 0.928 50 H 0.078 0.922 51 H 0.042 0.958 52 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -12.174 6.978 21.699 25.841 hybrid contribution 1.087 0.104 -0.381 1.156 sum -11.087 7.082 21.318 25.051 Atomic orbital electron populations 1.22067 0.93677 1.02960 1.03178 1.21043 0.94603 0.92741 0.87851 1.22328 1.02178 0.95943 1.02606 1.44634 1.14791 1.58216 1.16807 1.18564 0.86016 0.87446 0.89289 1.21130 0.96699 1.10254 0.99439 1.21131 0.93682 0.88545 0.96798 1.20621 0.97659 1.10215 0.97521 1.17906 0.85695 0.77932 0.82789 1.90748 1.55921 1.60776 1.35541 1.45976 1.19443 1.56377 1.15531 1.21435 0.83552 0.96848 0.97648 1.21959 0.99064 0.99363 0.93696 0.90310 1.21340 0.96455 0.98693 0.97364 1.21999 1.00925 0.98880 0.95550 1.21352 0.89440 0.91555 0.97796 1.44331 1.27478 1.54241 1.06831 1.18904 0.91640 1.44933 0.83318 0.89677 1.25267 0.97365 0.99618 0.95362 1.69829 1.35000 1.51477 0.98852 0.86939 0.87499 0.77549 0.76610 1.21729 1.23256 1.19491 1.20937 0.98953 0.92158 0.85009 1.22728 0.86960 0.90467 0.96483 1.67267 1.17329 1.15130 1.26608 0.91794 0.91736 0.90681 0.89774 0.92008 0.91384 0.91962 0.75762 0.84632 0.83895 0.76224 0.91447 0.91722 0.92319 0.92753 0.92713 0.91708 0.95699 0.91143 0.92796 0.92186 0.95792 0.82155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.58 9.38 37.16 0.35 -0.23 16 2 C 0.14 0.73 2.86 -67.93 -0.19 0.53 16 3 C -0.17 -0.85 9.39 37.16 0.35 -0.50 16 4 N -0.71 -5.42 5.22 -53.96 -0.28 -5.71 16 5 C 0.42 4.39 7.62 -155.28 -1.18 3.21 16 6 C -0.25 -2.37 8.74 -39.65 -0.35 -2.71 16 7 C 0.02 0.27 9.65 -39.29 -0.38 -0.11 16 8 C -0.25 -3.12 5.89 -104.82 -0.62 -3.74 16 9 C 0.57 8.11 7.77 -12.47 -0.10 8.01 16 10 O -0.55 -9.46 16.41 5.28 0.09 -9.37 16 11 N -0.72 -9.47 5.28 -61.35 -0.32 -9.79 16 12 C 0.13 1.77 5.07 -4.04 -0.02 1.75 16 13 C -0.12 -1.83 2.37 -90.50 -0.21 -2.04 16 14 H 0.08 1.24 8.14 -51.92 -0.42 0.82 16 15 C -0.10 -1.49 5.17 -26.69 -0.14 -1.63 16 16 C -0.13 -2.30 6.08 -26.61 -0.16 -2.46 16 17 C 0.12 2.66 4.19 -3.71 -0.02 2.65 16 18 N -0.61 -13.97 2.77 -172.32 -0.48 -14.45 16 19 C -0.26 -7.10 10.04 -15.06 -0.15 -7.25 16 20 H 0.09 2.46 8.05 -52.49 -0.42 2.03 16 21 C 0.02 0.65 5.24 -17.43 -0.09 0.56 16 22 N -0.91 -27.67 13.97 55.49 0.78 -26.89 16 23 Si 0.88 22.39 24.35 -169.99 -4.14 18.25 16 24 H -0.29 -7.10 6.70 56.52 0.38 -6.72 16 25 H -0.30 -7.88 7.11 56.52 0.40 -7.47 16 26 H -0.27 -6.73 6.45 56.52 0.36 -6.36 16 27 C 0.16 2.91 5.60 -3.71 -0.02 2.89 16 28 C 0.19 2.30 10.71 -17.12 -0.18 2.12 16 29 N -0.55 -6.68 10.38 -12.14 -0.13 -6.81 16 30 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 32 H 0.07 0.18 8.14 -51.93 -0.42 -0.24 16 33 H 0.08 0.40 6.43 -51.93 -0.33 0.07 16 34 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.07 0.24 8.14 -51.93 -0.42 -0.19 16 36 H 0.06 0.39 7.62 -51.93 -0.40 -0.01 16 37 H 0.41 2.93 8.72 -40.82 -0.36 2.58 16 38 H 0.14 0.94 6.01 -52.49 -0.32 0.62 16 39 H 0.14 1.48 7.73 -52.49 -0.41 1.07 16 40 H 0.40 4.75 5.76 -40.82 -0.23 4.52 16 41 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 47 H 0.03 0.54 6.98 -51.93 -0.36 0.17 16 48 H 0.07 1.67 4.50 -51.93 -0.23 1.44 16 49 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 50 H 0.06 1.09 7.14 -51.93 -0.37 0.72 16 51 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 52 H 0.16 1.66 6.41 -52.49 -0.34 1.32 16 LS Contribution 403.93 15.07 6.09 6.09 Total: -1.00 -33.63 403.93 -9.97 -43.61 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -8.46 Total: 4.04 kcal Atomic # 6 Polarization: 4.15 SS G_CDS: -3.12 Total: 1.03 kcal Atomic # 7 Polarization: -63.21 SS G_CDS: -0.44 Total: -63.65 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: 0.09 Total: -9.37 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -4.14 Total: 18.25 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -33.63 -9.97 -43.61 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267889546.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.867 kcal (2) G-P(sol) polarization free energy of solvation -33.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds