Wall clock time and date at job start Wed Apr 1 2020 03:59:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53004 * 109.47281 * 2 1 4 4 H 1.09004 * 109.47243 * 183.69289 * 3 2 1 5 5 C 1.50700 * 109.47298 * 303.69519 * 3 2 1 6 6 H 1.07996 * 119.99632 * 115.74273 * 5 3 2 7 7 C 1.37874 * 119.99987 * 295.74165 * 5 3 2 8 8 N 1.31508 * 120.00133 * 353.65148 * 7 5 3 9 9 Si 1.86800 * 119.99794 * 173.64579 * 7 5 3 10 10 H 1.48502 * 109.47383 * 270.00247 * 9 7 5 11 11 H 1.48499 * 109.47257 * 30.00205 * 9 7 5 12 12 H 1.48501 * 109.46953 * 150.00463 * 9 7 5 13 13 N 1.46899 * 109.46752 * 63.69658 * 3 2 1 14 14 C 1.46904 * 111.00216 * 80.91637 * 13 3 2 15 15 C 1.50690 * 109.47328 * 184.64867 * 14 13 3 16 16 O 1.21299 * 120.00077 * 0.02562 * 15 14 13 17 17 N 1.34772 * 120.00244 * 179.97438 * 15 14 13 18 18 C 1.40185 * 120.00251 * 185.20234 * 17 15 14 19 19 C 1.39418 * 120.40617 * 33.60664 * 18 17 15 20 20 C 1.38247 * 118.44779 * 179.97438 * 19 18 17 21 21 C 1.39117 * 119.17311 * 0.02562 * 20 19 18 22 22 N 1.39212 * 119.63208 * 179.97438 * 21 20 19 23 23 C 1.46854 * 110.99888 * 304.21187 * 22 21 20 24 24 C 1.53041 * 109.52167 * 174.16220 * 23 22 21 25 25 C 1.53114 * 109.27738 * 59.17788 * 24 23 22 26 26 C 1.53122 * 109.16262 * 302.34183 * 25 24 23 27 27 C 1.46847 * 111.00136 * 180.02562 * 22 21 20 28 28 N 1.32350 * 120.73829 * 0.02562 * 21 20 19 29 29 C 1.31973 * 121.68842 * 359.71911 * 28 21 20 30 30 H 1.08996 * 109.47797 * 184.82710 * 1 2 3 31 31 H 1.09004 * 109.47190 * 304.82875 * 1 2 3 32 32 H 1.08997 * 109.47735 * 64.82329 * 1 2 3 33 33 H 1.09006 * 109.46986 * 240.00352 * 2 1 3 34 34 H 1.09000 * 109.47546 * 120.00312 * 2 1 3 35 35 H 0.97006 * 120.00141 * 354.24338 * 8 7 5 36 36 H 1.00900 * 110.99995 * 316.96325 * 13 3 2 37 37 H 1.08998 * 109.47087 * 304.65282 * 14 13 3 38 38 H 1.09001 * 109.46571 * 64.64808 * 14 13 3 39 39 H 0.97002 * 120.00276 * 5.21101 * 17 15 14 40 40 H 1.08000 * 120.77121 * 359.96066 * 19 18 17 41 41 H 1.07998 * 120.41657 * 179.97438 * 20 19 18 42 42 H 1.09003 * 109.45990 * 294.17648 * 23 22 21 43 43 H 1.08995 * 109.46393 * 54.14610 * 23 22 21 44 44 H 1.08996 * 109.50177 * 299.23467 * 24 23 22 45 45 H 1.09000 * 109.49669 * 179.11925 * 24 23 22 46 46 H 1.09003 * 109.51827 * 182.44161 * 25 24 23 47 47 H 1.08996 * 109.57946 * 62.28212 * 25 24 23 48 48 H 1.08997 * 109.50334 * 297.71669 * 26 25 24 49 49 H 1.09003 * 109.53476 * 177.61569 * 26 25 24 50 50 H 1.08999 * 109.45712 * 305.85545 * 27 22 21 51 51 H 1.09001 * 109.46251 * 65.82817 * 27 22 21 52 52 H 1.08008 * 119.61512 * 180.26789 * 29 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1280 1.4432 -0.0662 5 6 1.4643 2.1789 -1.1821 6 1 0.7957 3.0125 -1.0256 7 6 1.7912 1.7885 -2.4634 8 7 2.6997 0.8572 -2.6554 9 14 0.9436 2.5823 -3.9265 10 1 -0.2781 1.8107 -4.2694 11 1 0.5679 3.9775 -3.5839 12 1 1.8670 2.5896 -5.0895 13 7 1.6246 2.1087 1.2416 14 6 2.5220 1.7609 2.3514 15 6 2.0010 2.3685 3.6282 16 8 0.9818 3.0262 3.6151 17 7 2.6667 2.1804 4.7848 18 6 2.1263 2.6519 5.9893 19 6 0.7462 2.6649 6.1863 20 6 0.2572 3.1380 7.3898 21 6 1.1521 3.5829 8.3575 22 7 0.6701 4.0617 9.5726 23 6 -0.2865 5.1565 9.3646 24 6 -0.9029 5.5587 10.7064 25 6 0.2092 6.0021 11.6609 26 6 1.2174 4.8610 11.8224 27 6 1.7724 4.4796 10.4482 28 7 2.4566 3.5570 8.1355 29 6 2.9579 3.1074 7.0005 30 1 -0.3634 -1.0239 0.0865 31 1 -0.3634 0.5869 0.8436 32 1 -0.3634 0.4372 -0.9300 33 1 1.8932 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 3.1993 0.5044 -1.9024 36 1 0.6667 1.8867 1.4681 37 1 2.5667 0.6770 2.4566 38 1 3.5203 2.1474 2.1460 39 1 3.5198 1.7187 4.7838 40 1 0.0748 2.3137 5.4166 41 1 -0.8063 3.1626 7.5760 42 1 0.2302 6.0127 8.9310 43 1 -1.0742 4.8267 8.6874 44 1 -1.4314 4.7068 11.1340 45 1 -1.6012 6.3817 10.5538 46 1 -0.2209 6.2482 12.6318 47 1 0.7129 6.8783 11.2530 48 1 0.7222 3.9981 12.2677 49 1 2.0342 5.1849 12.4676 50 1 2.4803 3.6580 10.5579 51 1 2.2790 5.3392 10.0094 52 1 4.0283 3.0974 6.8566 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000568181497.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:59 Heat of formation + Delta-G solvation = 6.823150 kcal Electronic energy + Delta-G solvation = -29878.513338 eV Core-core repulsion = 25877.681094 eV Total energy + Delta-G solvation = -4000.832244 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.17792 -39.93006 -38.45913 -36.69564 -35.21786 -33.55403 -32.85528 -32.44347 -31.13916 -30.79384 -29.20560 -27.04300 -25.26086 -24.61562 -24.23257 -23.59631 -22.76140 -22.22184 -20.53778 -20.04619 -19.58130 -18.22818 -17.69958 -17.29176 -16.67923 -16.09100 -15.64471 -15.44447 -15.20387 -14.73555 -14.60835 -14.49628 -14.11587 -13.99395 -13.74819 -13.70680 -13.54622 -13.37368 -13.28511 -13.08885 -12.72103 -12.51678 -12.38839 -12.07454 -11.73769 -11.61551 -11.30679 -11.15855 -10.97736 -10.88151 -10.85309 -10.77920 -10.37530 -10.14345 -10.10759 -10.06135 -9.96504 -9.91436 -9.59971 -9.30525 -8.64384 -8.31127 -7.90984 -7.44256 -6.32435 -4.02027 0.87668 1.12894 2.62731 2.86089 3.24780 3.45602 3.49234 3.65253 3.66937 4.19173 4.39542 4.49086 4.51161 4.52623 4.65505 4.74290 4.78471 4.92631 4.99817 5.04474 5.12646 5.13809 5.22738 5.31659 5.36303 5.44290 5.46593 5.48351 5.54702 5.59922 5.63878 5.65285 5.71573 5.82690 5.88251 5.96571 6.04672 6.08626 6.09526 6.26763 6.46416 6.49387 6.62008 6.85880 6.94676 6.95988 7.19889 7.23242 7.25690 7.76618 7.80628 8.12801 8.19240 8.37404 8.62635 8.89335 9.65153 11.03354 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.025898 B = 0.001742 C = 0.001703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.893357 B =16068.748030 C =16442.410336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.154 4.154 3 C 0.204 3.796 4 H 0.028 0.972 5 C -0.570 4.570 6 H 0.057 0.943 7 C 0.019 3.981 8 N -0.916 5.916 9 Si 1.067 2.933 10 H -0.289 1.289 11 H -0.288 1.288 12 H -0.287 1.287 13 N -0.661 5.661 14 C 0.041 3.959 15 C 0.514 3.486 16 O -0.506 6.506 17 N -0.676 5.676 18 C 0.082 3.918 19 C -0.056 4.056 20 C -0.163 4.163 21 C 0.288 3.712 22 N -0.474 5.474 23 C 0.057 3.943 24 C -0.117 4.117 25 C -0.124 4.124 26 C -0.121 4.121 27 C 0.067 3.933 28 N -0.501 5.501 29 C 0.098 3.902 30 H 0.027 0.973 31 H 0.036 0.964 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.019 0.981 35 H 0.268 0.732 36 H 0.340 0.660 37 H 0.054 0.946 38 H 0.097 0.903 39 H 0.412 0.588 40 H 0.147 0.853 41 H 0.138 0.862 42 H 0.045 0.955 43 H 0.084 0.916 44 H 0.074 0.926 45 H 0.072 0.928 46 H 0.066 0.934 47 H 0.060 0.940 48 H 0.070 0.930 49 H 0.070 0.930 50 H 0.085 0.915 51 H 0.047 0.953 52 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.772 4.266 27.965 28.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.193 4.193 3 C 0.096 3.904 4 H 0.046 0.954 5 C -0.608 4.608 6 H 0.076 0.924 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.896 3.104 10 H -0.216 1.216 11 H -0.214 1.214 12 H -0.213 1.213 13 N -0.294 5.294 14 C -0.092 4.092 15 C 0.302 3.698 16 O -0.378 6.378 17 N -0.324 5.324 18 C -0.015 4.015 19 C -0.085 4.085 20 C -0.185 4.185 21 C 0.056 3.944 22 N -0.192 5.192 23 C -0.069 4.069 24 C -0.155 4.155 25 C -0.162 4.162 26 C -0.159 4.159 27 C -0.060 4.060 28 N -0.214 5.214 29 C -0.062 4.062 30 H 0.046 0.954 31 H 0.055 0.945 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.038 0.962 35 H 0.079 0.921 36 H 0.160 0.840 37 H 0.072 0.928 38 H 0.115 0.885 39 H 0.248 0.752 40 H 0.165 0.835 41 H 0.156 0.844 42 H 0.063 0.937 43 H 0.102 0.898 44 H 0.092 0.908 45 H 0.091 0.909 46 H 0.084 0.916 47 H 0.079 0.921 48 H 0.089 0.911 49 H 0.089 0.911 50 H 0.104 0.896 51 H 0.065 0.935 52 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -2.038 5.224 27.002 27.578 hybrid contribution 0.255 -0.972 0.859 1.322 sum -1.782 4.252 27.861 28.240 Atomic orbital electron populations 1.21553 0.96679 0.98349 1.02115 1.22244 0.96283 1.01230 0.99587 1.19387 0.95520 0.88478 0.87008 0.95443 1.21839 1.30758 1.17446 0.90782 0.92444 1.25704 0.96650 0.95884 1.00178 1.70781 1.22200 1.27083 1.35255 0.83565 0.75771 0.75604 0.75460 1.21563 1.21429 1.21255 1.60664 1.05205 1.62329 1.01201 1.21861 0.99938 0.98043 0.89338 1.21296 0.84169 0.79724 0.84650 1.90700 1.24223 1.37116 1.85754 1.43623 1.25255 1.58695 1.04783 1.18696 0.93535 1.01322 0.87992 1.21499 0.94265 0.96082 0.96607 1.21458 1.00780 1.03142 0.93168 1.19757 0.88597 0.96552 0.89542 1.59240 1.16516 1.33997 1.09460 1.22292 0.94943 0.91258 0.98410 1.21617 0.97849 1.01530 0.94519 1.21617 0.96741 0.98165 0.99665 1.21677 0.98964 0.98808 0.96442 1.21961 0.91620 1.00651 0.91744 1.67526 1.13881 1.17779 1.22251 1.22306 0.99785 0.95649 0.88448 0.95378 0.94504 0.91238 0.91002 0.96227 0.92104 0.83954 0.92846 0.88466 0.75224 0.83516 0.84433 0.93694 0.89783 0.90771 0.90916 0.91574 0.92080 0.91100 0.91148 0.89634 0.93464 0.82543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.65 9.38 37.15 0.35 -2.31 16 2 C -0.15 -3.35 5.45 -26.73 -0.15 -3.50 16 3 C 0.20 4.83 1.96 -68.86 -0.13 4.70 16 4 H 0.03 0.70 7.31 -51.93 -0.38 0.32 16 5 C -0.57 -15.39 7.44 -34.44 -0.26 -15.65 16 6 H 0.06 1.62 7.82 -52.49 -0.41 1.21 16 7 C 0.02 0.53 5.26 -17.82 -0.09 0.43 16 8 N -0.92 -26.32 12.86 55.43 0.71 -25.61 16 9 Si 1.07 24.95 29.91 -169.99 -5.08 19.86 16 10 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 12 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 13 N -0.66 -13.84 5.93 -109.22 -0.65 -14.49 16 14 C 0.04 0.66 5.99 -4.98 -0.03 0.63 16 15 C 0.51 7.81 7.62 -10.99 -0.08 7.73 16 16 O -0.51 -9.48 13.84 5.54 0.08 -9.41 16 17 N -0.68 -7.69 5.36 -9.73 -0.05 -7.74 16 18 C 0.08 1.00 6.30 -83.46 -0.53 0.47 16 19 C -0.06 -0.73 8.76 -39.14 -0.34 -1.07 16 20 C -0.16 -1.86 9.18 -39.25 -0.36 -2.22 16 21 C 0.29 3.35 6.41 -154.86 -0.99 2.35 16 22 N -0.47 -4.67 4.68 -173.17 -0.81 -5.48 16 23 C 0.06 0.47 5.25 -3.83 -0.02 0.45 16 24 C -0.12 -0.74 6.09 -26.65 -0.16 -0.90 16 25 C -0.12 -0.74 6.00 -26.61 -0.16 -0.90 16 26 C -0.12 -0.81 6.09 -26.65 -0.16 -0.97 16 27 C 0.07 0.60 4.65 -3.83 -0.02 0.58 16 28 N -0.50 -6.00 8.68 -12.25 -0.11 -6.10 16 29 C 0.10 1.08 11.11 -17.35 -0.19 0.89 16 30 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.04 0.71 6.23 -51.93 -0.32 0.38 16 32 H 0.07 1.57 7.30 -51.93 -0.38 1.19 16 33 H 0.07 1.74 6.27 -51.93 -0.33 1.42 16 34 H 0.02 0.37 7.05 -51.93 -0.37 0.01 16 35 H 0.27 7.59 6.06 -40.82 -0.25 7.34 16 36 H 0.34 7.18 6.01 -39.29 -0.24 6.95 16 37 H 0.05 0.78 7.01 -51.93 -0.36 0.42 16 38 H 0.10 1.46 8.14 -51.93 -0.42 1.04 16 39 H 0.41 3.24 8.82 -40.82 -0.36 2.88 16 40 H 0.15 2.04 6.54 -52.49 -0.34 1.70 16 41 H 0.14 1.32 7.14 -52.49 -0.37 0.95 16 42 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.08 0.65 6.67 -51.93 -0.35 0.31 16 44 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 47 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 48 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 49 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 50 H 0.09 0.83 7.71 -51.93 -0.40 0.43 16 51 H 0.05 0.46 8.11 -51.93 -0.42 0.04 16 52 H 0.16 1.29 8.06 -52.48 -0.42 0.86 16 LS Contribution 402.90 15.07 6.07 6.07 Total: -1.00 -31.90 402.90 -11.47 -43.37 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: -8.30 Total: 8.82 kcal Atomic # 6 Polarization: -5.96 SS G_CDS: -3.33 Total: -9.29 kcal Atomic # 7 Polarization: -58.52 SS G_CDS: -0.90 Total: -59.43 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: 0.08 Total: -9.41 kcal Atomic # 14 Polarization: 24.95 SS G_CDS: -5.08 Total: 19.86 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -31.90 -11.47 -43.37 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568181497.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.192 kcal (2) G-P(sol) polarization free energy of solvation -31.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds