Wall clock time and date at job start Wed Apr 1 2020 03:59:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53004 * 109.47281 * 2 1 4 4 H 1.09004 * 109.47243 * 183.69289 * 3 2 1 5 5 C 1.50700 * 109.47298 * 303.69519 * 3 2 1 6 6 H 1.07996 * 119.99632 * 115.74273 * 5 3 2 7 7 C 1.37874 * 119.99987 * 295.74165 * 5 3 2 8 8 N 1.31508 * 120.00133 * 353.65148 * 7 5 3 9 9 Si 1.86800 * 119.99794 * 173.64579 * 7 5 3 10 10 H 1.48502 * 109.47383 * 270.00247 * 9 7 5 11 11 H 1.48499 * 109.47257 * 30.00205 * 9 7 5 12 12 H 1.48501 * 109.46953 * 150.00463 * 9 7 5 13 13 N 1.46899 * 109.46752 * 63.69658 * 3 2 1 14 14 C 1.46904 * 111.00216 * 80.91637 * 13 3 2 15 15 C 1.50690 * 109.47328 * 184.64867 * 14 13 3 16 16 O 1.21299 * 120.00077 * 0.02562 * 15 14 13 17 17 N 1.34772 * 120.00244 * 179.97438 * 15 14 13 18 18 C 1.40185 * 120.00251 * 185.20234 * 17 15 14 19 19 C 1.39418 * 120.40617 * 33.60664 * 18 17 15 20 20 C 1.38247 * 118.44779 * 179.97438 * 19 18 17 21 21 C 1.39117 * 119.17311 * 0.02562 * 20 19 18 22 22 N 1.39212 * 119.63208 * 179.97438 * 21 20 19 23 23 C 1.46854 * 110.99888 * 304.21187 * 22 21 20 24 24 C 1.53041 * 109.52167 * 174.16220 * 23 22 21 25 25 C 1.53114 * 109.27738 * 59.17788 * 24 23 22 26 26 C 1.53122 * 109.16262 * 302.34183 * 25 24 23 27 27 C 1.46847 * 111.00136 * 180.02562 * 22 21 20 28 28 N 1.32350 * 120.73829 * 0.02562 * 21 20 19 29 29 C 1.31973 * 121.68842 * 359.71911 * 28 21 20 30 30 H 1.08996 * 109.47797 * 184.82710 * 1 2 3 31 31 H 1.09004 * 109.47190 * 304.82875 * 1 2 3 32 32 H 1.08997 * 109.47735 * 64.82329 * 1 2 3 33 33 H 1.09006 * 109.46986 * 240.00352 * 2 1 3 34 34 H 1.09000 * 109.47546 * 120.00312 * 2 1 3 35 35 H 0.97006 * 120.00141 * 354.24338 * 8 7 5 36 36 H 1.00900 * 110.99995 * 316.96325 * 13 3 2 37 37 H 1.08998 * 109.47087 * 304.65282 * 14 13 3 38 38 H 1.09001 * 109.46571 * 64.64808 * 14 13 3 39 39 H 0.97002 * 120.00276 * 5.21101 * 17 15 14 40 40 H 1.08000 * 120.77121 * 359.96066 * 19 18 17 41 41 H 1.07998 * 120.41657 * 179.97438 * 20 19 18 42 42 H 1.09003 * 109.45990 * 294.17648 * 23 22 21 43 43 H 1.08995 * 109.46393 * 54.14610 * 23 22 21 44 44 H 1.08996 * 109.50177 * 299.23467 * 24 23 22 45 45 H 1.09000 * 109.49669 * 179.11925 * 24 23 22 46 46 H 1.09003 * 109.51827 * 182.44161 * 25 24 23 47 47 H 1.08996 * 109.57946 * 62.28212 * 25 24 23 48 48 H 1.08997 * 109.50334 * 297.71669 * 26 25 24 49 49 H 1.09003 * 109.53476 * 177.61569 * 26 25 24 50 50 H 1.08999 * 109.45712 * 305.85545 * 27 22 21 51 51 H 1.09001 * 109.46251 * 65.82817 * 27 22 21 52 52 H 1.08008 * 119.61512 * 180.26789 * 29 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1280 1.4432 -0.0662 5 6 1.4643 2.1789 -1.1821 6 1 0.7957 3.0125 -1.0256 7 6 1.7912 1.7885 -2.4634 8 7 2.6997 0.8572 -2.6554 9 14 0.9436 2.5823 -3.9265 10 1 -0.2781 1.8107 -4.2694 11 1 0.5679 3.9775 -3.5839 12 1 1.8670 2.5896 -5.0895 13 7 1.6246 2.1087 1.2416 14 6 2.5220 1.7609 2.3514 15 6 2.0010 2.3685 3.6282 16 8 0.9818 3.0262 3.6151 17 7 2.6667 2.1804 4.7848 18 6 2.1263 2.6519 5.9893 19 6 0.7462 2.6649 6.1863 20 6 0.2572 3.1380 7.3898 21 6 1.1521 3.5829 8.3575 22 7 0.6701 4.0617 9.5726 23 6 -0.2865 5.1565 9.3646 24 6 -0.9029 5.5587 10.7064 25 6 0.2092 6.0021 11.6609 26 6 1.2174 4.8610 11.8224 27 6 1.7724 4.4796 10.4482 28 7 2.4566 3.5570 8.1355 29 6 2.9579 3.1074 7.0005 30 1 -0.3634 -1.0239 0.0865 31 1 -0.3634 0.5869 0.8436 32 1 -0.3634 0.4372 -0.9300 33 1 1.8932 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 3.1993 0.5044 -1.9024 36 1 0.6667 1.8867 1.4681 37 1 2.5667 0.6770 2.4566 38 1 3.5203 2.1474 2.1460 39 1 3.5198 1.7187 4.7838 40 1 0.0748 2.3137 5.4166 41 1 -0.8063 3.1626 7.5760 42 1 0.2302 6.0127 8.9310 43 1 -1.0742 4.8267 8.6874 44 1 -1.4314 4.7068 11.1340 45 1 -1.6012 6.3817 10.5538 46 1 -0.2209 6.2482 12.6318 47 1 0.7129 6.8783 11.2530 48 1 0.7222 3.9981 12.2677 49 1 2.0342 5.1849 12.4676 50 1 2.4803 3.6580 10.5579 51 1 2.2790 5.3392 10.0094 52 1 4.0283 3.0974 6.8566 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000568181497.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:58 Heat of formation + Delta-G solvation = -13.717083 kcal Electronic energy + Delta-G solvation = -29879.404029 eV Core-core repulsion = 25877.681094 eV Total energy + Delta-G solvation = -4001.722935 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.09931 -40.96675 -39.33441 -38.36878 -36.23668 -34.65753 -34.27779 -33.43154 -32.50820 -31.76426 -30.23435 -28.57634 -26.58973 -25.69379 -25.40350 -25.11195 -23.49941 -23.13027 -21.66526 -21.33557 -20.70002 -19.34198 -18.86116 -18.45244 -17.97578 -17.34954 -16.90005 -16.23745 -16.18801 -15.80507 -15.71914 -15.49288 -15.40461 -15.18430 -15.13337 -14.88170 -14.64477 -14.50951 -14.19328 -14.02697 -13.97505 -13.64689 -13.56912 -13.39279 -13.13553 -13.07421 -12.62907 -12.20390 -12.11883 -12.10158 -11.95285 -11.91986 -11.68411 -11.66706 -11.47907 -11.43896 -11.24328 -10.84891 -10.65446 -10.50402 -10.38202 -10.24505 -9.09750 -8.78855 -8.49195 -6.18797 -0.04170 0.19768 1.46661 1.55992 1.62835 1.80342 1.82592 2.44330 2.60376 2.78704 3.25830 3.39329 3.54148 3.63504 3.80383 3.82794 3.92338 3.93289 4.01699 4.11586 4.25998 4.26888 4.29515 4.36898 4.38669 4.42909 4.48475 4.55051 4.57680 4.62786 4.68549 4.82842 4.85036 4.90888 4.92339 5.02564 5.07329 5.07967 5.15965 5.20133 5.21111 5.25844 5.41770 5.43425 5.52134 5.56290 5.74732 5.93001 6.11663 6.19885 6.28360 6.54818 6.65750 6.80626 6.87997 7.04931 7.54114 8.87405 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.025898 B = 0.001742 C = 0.001703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.893357 B =16068.748030 C =16442.410336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.145 4.145 3 C 0.208 3.792 4 H 0.009 0.991 5 C -0.577 4.577 6 H 0.038 0.962 7 C -0.023 4.023 8 N -0.937 5.937 9 Si 1.106 2.894 10 H -0.276 1.276 11 H -0.280 1.280 12 H -0.286 1.286 13 N -0.676 5.676 14 C 0.042 3.958 15 C 0.520 3.480 16 O -0.546 6.546 17 N -0.654 5.654 18 C 0.066 3.934 19 C -0.069 4.069 20 C -0.166 4.166 21 C 0.283 3.717 22 N -0.476 5.476 23 C 0.054 3.946 24 C -0.113 4.113 25 C -0.123 4.123 26 C -0.116 4.116 27 C 0.069 3.931 28 N -0.513 5.513 29 C 0.106 3.894 30 H 0.052 0.948 31 H 0.046 0.954 32 H 0.041 0.959 33 H 0.044 0.956 34 H 0.047 0.953 35 H 0.260 0.740 36 H 0.338 0.662 37 H 0.076 0.924 38 H 0.109 0.891 39 H 0.430 0.570 40 H 0.132 0.868 41 H 0.152 0.848 42 H 0.035 0.965 43 H 0.086 0.914 44 H 0.075 0.925 45 H 0.087 0.913 46 H 0.081 0.919 47 H 0.058 0.942 48 H 0.070 0.930 49 H 0.083 0.917 50 H 0.075 0.925 51 H 0.036 0.964 52 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.880 4.369 29.938 30.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.185 4.185 3 C 0.100 3.900 4 H 0.027 0.973 5 C -0.616 4.616 6 H 0.056 0.944 7 C -0.222 4.222 8 N -0.575 5.575 9 Si 0.930 3.070 10 H -0.202 1.202 11 H -0.206 1.206 12 H -0.212 1.212 13 N -0.310 5.310 14 C -0.090 4.090 15 C 0.308 3.692 16 O -0.422 6.422 17 N -0.302 5.302 18 C -0.031 4.031 19 C -0.097 4.097 20 C -0.189 4.189 21 C 0.050 3.950 22 N -0.194 5.194 23 C -0.071 4.071 24 C -0.151 4.151 25 C -0.161 4.161 26 C -0.154 4.154 27 C -0.058 4.058 28 N -0.227 5.227 29 C -0.054 4.054 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.158 0.842 37 H 0.094 0.906 38 H 0.126 0.874 39 H 0.270 0.730 40 H 0.150 0.850 41 H 0.169 0.831 42 H 0.054 0.946 43 H 0.105 0.895 44 H 0.094 0.906 45 H 0.105 0.895 46 H 0.100 0.900 47 H 0.077 0.923 48 H 0.089 0.911 49 H 0.101 0.899 50 H 0.093 0.907 51 H 0.055 0.945 52 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -2.117 5.313 29.034 29.592 hybrid contribution 0.316 -0.983 0.390 1.104 sum -1.801 4.330 29.424 29.795 Atomic orbital electron populations 1.21475 0.95653 0.99885 1.01080 1.22091 0.97124 0.99746 0.99537 1.19158 0.94048 0.89425 0.87405 0.97328 1.22076 1.30127 1.17022 0.92394 0.94378 1.26818 0.96715 0.95885 1.02773 1.70872 1.23296 1.28335 1.34996 0.83044 0.75436 0.75448 0.73044 1.20200 1.20584 1.21177 1.60465 1.05844 1.62719 1.01924 1.21889 0.99280 0.99524 0.88307 1.21044 0.83719 0.79212 0.85221 1.90694 1.26051 1.39106 1.86357 1.43284 1.25455 1.57885 1.03586 1.18784 0.93528 1.02493 0.88314 1.21503 0.94680 0.96738 0.96802 1.21579 1.01603 1.02974 0.92777 1.20040 0.88656 0.96177 0.90083 1.59301 1.16881 1.34512 1.08734 1.22389 0.94561 0.90355 0.99816 1.21622 0.98073 1.02074 0.93320 1.21627 0.96420 0.97675 1.00357 1.21662 0.99565 0.99113 0.95050 1.21965 0.91334 0.99732 0.92751 1.67616 1.14128 1.18295 1.22683 1.22723 1.00983 0.94140 0.87571 0.92858 0.93493 0.93942 0.93703 0.93430 0.92905 0.84218 0.90620 0.87351 0.73028 0.84972 0.83076 0.94645 0.89530 0.90632 0.89480 0.90013 0.92290 0.91133 0.89872 0.90675 0.94529 0.79700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.96 9.38 71.98 0.68 -4.28 16 2 C -0.15 -6.25 5.45 30.59 0.17 -6.08 16 3 C 0.21 9.90 1.96 44.17 0.09 9.99 16 4 H 0.01 0.45 7.31 -2.38 -0.02 0.43 16 5 C -0.58 -31.67 7.44 25.60 0.19 -31.48 16 6 H 0.04 2.19 7.82 -2.91 -0.02 2.17 16 7 C -0.02 -1.30 5.26 84.65 0.45 -0.85 16 8 N -0.94 -54.49 12.86 21.45 0.28 -54.21 16 9 Si 1.11 50.51 29.91 68.60 2.05 52.56 16 10 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 11 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 12 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 13 N -0.68 -28.17 5.93 -499.46 -2.96 -31.13 16 14 C 0.04 1.30 5.99 85.55 0.51 1.82 16 15 C 0.52 15.31 7.62 87.65 0.67 15.97 16 16 O -0.55 -20.51 13.84 -3.09 -0.04 -20.56 16 17 N -0.65 -13.81 5.36 -303.08 -1.62 -15.43 16 18 C 0.07 1.53 6.30 38.18 0.24 1.77 16 19 C -0.07 -1.76 8.76 22.56 0.20 -1.56 16 20 C -0.17 -3.75 9.18 22.48 0.21 -3.55 16 21 C 0.28 6.38 6.41 133.00 0.85 7.23 16 22 N -0.48 -8.98 4.68 -701.80 -3.29 -12.26 16 23 C 0.05 0.84 5.25 86.33 0.45 1.30 16 24 C -0.11 -1.22 6.09 30.65 0.19 -1.03 16 25 C -0.12 -1.23 6.00 30.67 0.18 -1.04 16 26 C -0.12 -1.35 6.09 30.65 0.19 -1.17 16 27 C 0.07 1.17 4.65 86.33 0.40 1.57 16 28 N -0.51 -11.76 8.68 -192.67 -1.67 -13.43 16 29 C 0.11 2.15 11.11 84.76 0.94 3.10 16 30 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.05 1.77 6.23 -2.38 -0.01 1.75 16 32 H 0.04 1.91 7.30 -2.39 -0.02 1.89 16 33 H 0.04 2.18 6.27 -2.38 -0.01 2.16 16 34 H 0.05 1.75 7.05 -2.39 -0.02 1.74 16 35 H 0.26 15.06 6.06 -92.70 -0.56 14.50 16 36 H 0.34 14.20 6.01 -89.69 -0.54 13.66 16 37 H 0.08 2.03 7.01 -2.39 -0.02 2.01 16 38 H 0.11 3.10 8.14 -2.39 -0.02 3.08 16 39 H 0.43 5.71 8.82 -92.71 -0.82 4.89 16 40 H 0.13 3.76 6.54 -2.91 -0.02 3.74 16 41 H 0.15 2.84 7.14 -2.91 -0.02 2.81 16 42 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 43 H 0.09 1.27 6.67 -2.39 -0.02 1.26 16 44 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 45 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 46 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 47 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 48 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 49 H 0.08 0.76 8.14 -2.39 -0.02 0.75 16 50 H 0.07 1.41 7.71 -2.39 -0.02 1.40 16 51 H 0.04 0.69 8.11 -2.39 -0.02 0.67 16 52 H 0.19 2.54 8.06 -2.91 -0.02 2.52 16 Total: -1.00 -69.66 402.90 -0.88 -70.53 By element: Atomic # 1 Polarization: 32.45 SS G_CDS: -0.21 Total: 32.24 kcal Atomic # 6 Polarization: -14.90 SS G_CDS: 6.60 Total: -8.30 kcal Atomic # 7 Polarization: -117.20 SS G_CDS: -9.27 Total: -126.47 kcal Atomic # 8 Polarization: -20.51 SS G_CDS: -0.04 Total: -20.56 kcal Atomic # 14 Polarization: 50.51 SS G_CDS: 2.05 Total: 52.56 kcal Total: -69.66 -0.88 -70.53 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568181497.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.816 kcal (2) G-P(sol) polarization free energy of solvation -69.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds