Wall clock time and date at job start Wed Apr 1 2020 04:22:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47347 * 2 1 4 4 N 1.46505 * 109.47341 * 179.97438 * 3 2 1 5 5 N 1.39932 * 125.75288 * 269.69545 * 4 3 2 6 6 C 1.30447 * 108.89353 * 179.84946 * 5 4 3 7 7 C 1.41287 * 108.02449 * 0.40063 * 6 5 4 8 8 C 1.47431 * 126.41338 * 179.76621 * 7 6 5 9 9 O 1.21604 * 119.99738 * 245.21175 * 8 7 6 10 10 N 1.34769 * 120.00184 * 65.21845 * 8 7 6 11 11 C 1.47079 * 120.88275 * 4.89225 * 10 8 7 12 12 C 1.53687 * 108.27805 * 128.75730 * 11 10 8 13 13 N 1.46905 * 109.26005 * 54.08598 * 12 11 10 14 14 C 1.46892 * 111.00275 * 172.61074 * 13 12 11 15 15 C 1.50700 * 109.46804 * 294.29746 * 14 13 12 16 16 H 1.07993 * 120.00392 * 359.97438 * 15 14 13 17 17 C 1.37884 * 119.99749 * 180.02562 * 15 14 13 18 18 N 1.31506 * 120.00088 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99517 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47143 * 90.00023 * 19 17 15 21 21 H 1.48508 * 109.46870 * 209.99491 * 19 17 15 22 22 H 1.48495 * 109.47341 * 329.99642 * 19 17 15 23 23 C 1.46904 * 111.26153 * 296.75539 * 13 12 11 24 24 C 1.47086 * 120.88031 * 185.17189 * 10 8 7 25 25 C 1.34257 * 125.75132 * 89.99881 * 4 3 2 26 26 C 1.50698 * 126.29283 * 0.02562 * 25 4 3 27 27 C 1.52998 * 117.49861 * 196.34146 * 26 25 4 28 28 C 1.53000 * 117.50152 * 127.71609 * 26 25 4 29 29 H 1.08997 * 109.46858 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46922 * 59.99984 * 1 2 3 31 31 H 1.09001 * 109.46664 * 299.99910 * 1 2 3 32 32 H 1.09006 * 109.47113 * 120.00657 * 2 1 3 33 33 H 1.08997 * 109.47081 * 239.99492 * 2 1 3 34 34 H 1.08998 * 109.47123 * 299.99893 * 3 2 1 35 35 H 1.08997 * 109.46965 * 59.99941 * 3 2 1 36 36 H 1.08000 * 125.98647 * 180.15107 * 6 5 4 37 37 H 1.09006 * 109.62417 * 248.52644 * 11 10 8 38 38 H 1.08992 * 109.62629 * 9.10181 * 11 10 8 39 39 H 1.08996 * 109.65214 * 294.07939 * 12 11 10 40 40 H 1.08999 * 109.42107 * 173.94856 * 12 11 10 41 41 H 1.09000 * 109.47524 * 54.29668 * 14 13 12 42 42 H 1.09000 * 109.47232 * 174.30063 * 14 13 12 43 43 H 0.97003 * 119.99829 * 179.97438 * 18 17 15 44 44 H 1.08997 * 109.49355 * 303.14389 * 23 13 12 45 45 H 1.09005 * 109.50972 * 183.07795 * 23 13 12 46 46 H 1.08997 * 109.62795 * 350.89653 * 24 10 8 47 47 H 1.09001 * 109.62897 * 111.47619 * 24 10 8 48 48 H 1.09002 * 115.55130 * 342.04199 * 26 25 4 49 49 H 1.09007 * 117.49972 * 359.97438 * 27 26 25 50 50 H 1.09000 * 117.50528 * 145.01947 * 27 26 25 51 51 H 1.08996 * 117.50209 * 214.97695 * 28 26 25 52 52 H 1.09002 * 117.49498 * 0.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4424 0.0006 5 7 4.3222 1.4486 1.1366 6 6 5.5708 1.4433 0.7588 7 6 5.6002 1.4428 -0.6538 8 6 6.8045 1.4423 -1.5041 9 8 7.0466 2.3982 -2.2158 10 7 7.6371 0.3826 -1.4927 11 6 7.3094 -0.8267 -0.7224 12 6 7.4445 -2.0423 -1.6530 13 7 8.7805 -2.0388 -2.2638 14 6 9.0156 -3.2742 -3.0230 15 6 9.0490 -4.4466 -2.0767 16 1 8.9100 -4.2896 -1.0173 17 6 9.2581 -5.7196 -2.5635 18 7 9.4278 -5.9107 -3.8534 19 14 9.3002 -7.1727 -1.3903 20 1 7.9302 -7.7246 -1.2365 21 1 10.1985 -8.2225 -1.9348 22 1 9.8056 -6.7263 -0.0673 23 6 8.9758 -0.8549 -3.1113 24 6 8.9006 0.4071 -2.2454 25 6 4.2900 1.4422 -1.0886 26 6 3.8260 1.4425 -2.5224 27 6 4.8474 1.0604 -3.5955 28 6 4.3988 2.5160 -3.4501 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5140 0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.6768 1.9563 -0.8900 35 1 1.6767 1.9562 0.8900 36 1 6.4313 1.4438 1.4114 37 1 7.9992 -0.9249 0.1159 38 1 6.2864 -0.7590 -0.3524 39 1 6.6870 -1.9913 -2.4351 40 1 7.3109 -2.9572 -1.0759 41 1 8.2127 -3.4143 -3.7468 42 1 9.9687 -3.2029 -3.5470 43 1 9.5753 -6.8063 -4.1958 44 1 8.1969 -0.8203 -3.8730 45 1 9.9526 -0.9084 -3.5921 46 1 8.9300 1.2909 -2.8827 47 1 9.7403 0.4251 -1.5507 48 1 2.7911 1.1397 -2.6817 49 1 5.8552 0.8092 -3.2645 50 1 4.4847 0.5060 -4.4611 51 1 3.7409 2.9191 -4.2199 52 1 5.1115 3.2217 -3.0234 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602204021.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:05 Heat of formation + Delta-G solvation = 76.848079 kcal Electronic energy + Delta-G solvation = -31781.971694 eV Core-core repulsion = 27784.175959 eV Total energy + Delta-G solvation = -3997.795735 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.76844 -39.57925 -37.60445 -36.87499 -35.71650 -34.29837 -32.45828 -31.86738 -30.92906 -29.97686 -28.21236 -26.85129 -25.49753 -24.05220 -23.20058 -22.67697 -22.37432 -22.20516 -21.45200 -20.57770 -19.75824 -18.44279 -17.58310 -16.65973 -16.38506 -16.00292 -15.38043 -15.30206 -15.04751 -14.83982 -14.70043 -14.58555 -14.37021 -13.87904 -13.79314 -13.60957 -13.53784 -13.44455 -12.83363 -12.66990 -12.44836 -12.24656 -11.94839 -11.79496 -11.69316 -11.49217 -11.37404 -11.26535 -11.11560 -11.07334 -11.05164 -10.91115 -10.72763 -10.60975 -10.54934 -10.47822 -9.87932 -9.67606 -9.37753 -9.26895 -8.55838 -8.49537 -8.35796 -7.30632 -6.06447 -4.08211 1.47999 2.14236 2.30388 2.87071 3.28983 3.32169 3.35839 3.39850 3.76551 4.12623 4.19875 4.38925 4.41407 4.60826 4.63535 4.70543 4.74214 4.84345 4.87394 4.93641 4.95929 5.10037 5.24441 5.29001 5.37793 5.39469 5.45569 5.48655 5.57660 5.60139 5.63507 5.65595 5.71041 5.76889 5.79480 5.82856 5.93838 6.00551 6.09034 6.15184 6.30228 6.33707 6.48736 6.51868 6.70515 6.76829 7.23175 7.28727 7.48013 7.62040 7.75245 8.02442 8.13057 8.36190 8.48468 8.99151 9.56312 11.04346 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010727 B = 0.003116 C = 0.002743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2609.691413 B = 8983.097481 C =10206.911855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.143 4.143 3 C 0.130 3.870 4 N -0.358 5.358 5 N -0.295 5.295 6 C 0.085 3.915 7 C -0.283 4.283 8 C 0.598 3.402 9 O -0.547 6.547 10 N -0.601 5.601 11 C 0.114 3.886 12 C 0.053 3.947 13 N -0.535 5.535 14 C 0.194 3.806 15 C -0.509 4.509 16 H 0.064 0.936 17 C 0.056 3.944 18 N -0.898 5.898 19 Si 0.897 3.103 20 H -0.282 1.282 21 H -0.287 1.287 22 H -0.272 1.272 23 C 0.042 3.958 24 C 0.118 3.882 25 C 0.171 3.829 26 C -0.122 4.122 27 C -0.158 4.158 28 C -0.150 4.150 29 H 0.063 0.937 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.093 0.907 35 H 0.097 0.903 36 H 0.189 0.811 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.024 0.976 40 H 0.095 0.905 41 H -0.010 1.010 42 H 0.031 0.969 43 H 0.261 0.739 44 H 0.026 0.974 45 H 0.081 0.919 46 H 0.089 0.911 47 H 0.073 0.927 48 H 0.117 0.883 49 H 0.107 0.893 50 H 0.101 0.899 51 H 0.098 0.902 52 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.569 15.890 5.229 22.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.181 4.181 3 C 0.009 3.991 4 N -0.137 5.137 5 N -0.114 5.114 6 C -0.102 4.102 7 C -0.297 4.297 8 C 0.386 3.614 9 O -0.426 6.426 10 N -0.334 5.334 11 C -0.009 4.009 12 C -0.076 4.076 13 N -0.260 5.260 14 C 0.069 3.931 15 C -0.547 4.547 16 H 0.082 0.918 17 C -0.146 4.146 18 N -0.537 5.537 19 Si 0.725 3.275 20 H -0.208 1.208 21 H -0.213 1.213 22 H -0.197 1.197 23 C -0.088 4.088 24 C -0.004 4.004 25 C 0.040 3.960 26 C -0.142 4.142 27 C -0.195 4.195 28 C -0.188 4.188 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.111 0.889 35 H 0.116 0.884 36 H 0.205 0.795 37 H 0.092 0.908 38 H 0.097 0.903 39 H 0.042 0.958 40 H 0.113 0.887 41 H 0.008 0.992 42 H 0.050 0.950 43 H 0.071 0.929 44 H 0.044 0.956 45 H 0.099 0.901 46 H 0.107 0.893 47 H 0.091 0.909 48 H 0.135 0.865 49 H 0.125 0.875 50 H 0.120 0.880 51 H 0.117 0.883 52 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -16.003 16.267 6.140 23.630 hybrid contribution -0.032 -1.180 -0.680 1.362 sum -16.035 15.086 5.461 22.683 Atomic orbital electron populations 1.21693 0.94159 1.02691 1.02134 1.21956 0.96776 0.95542 1.03858 1.21854 0.73861 0.98776 1.04596 1.48310 1.06461 1.55955 1.02959 1.77159 1.01709 1.25301 1.07262 1.23873 0.95247 0.97846 0.93194 1.19852 0.92641 1.23138 0.94102 1.17243 0.81549 0.81960 0.80624 1.90728 1.74674 1.34935 1.42265 1.48165 1.21027 1.15256 1.48918 1.22049 1.00802 0.83516 0.94560 1.22382 0.90468 0.97545 0.97227 1.62078 1.26326 1.03191 1.34421 1.19712 0.96071 0.84785 0.92489 1.21143 1.48817 0.90695 0.94087 0.91817 1.24988 0.95405 0.99021 0.95138 1.69954 1.49438 1.22125 1.12194 0.86515 0.77826 0.82068 0.81120 1.20776 1.21252 1.19707 1.22395 1.01172 0.90934 0.94267 1.21777 0.84806 0.98642 0.95224 1.20383 0.89481 0.97127 0.88981 1.20512 0.99371 1.08918 0.85382 1.23195 0.99309 0.98476 0.98528 1.23211 1.02788 0.92824 0.99978 0.91770 0.92351 0.92254 0.90651 0.91084 0.88850 0.88436 0.79467 0.90776 0.90275 0.95823 0.88705 0.99182 0.95045 0.92893 0.95582 0.90115 0.89301 0.90890 0.86513 0.87491 0.88038 0.88349 0.86518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 9.91 37.16 0.37 -0.41 16 2 C -0.14 -1.03 6.26 -26.73 -0.17 -1.20 16 3 C 0.13 1.00 6.12 -4.04 -0.02 0.98 16 4 N -0.36 -4.08 3.58 -56.61 -0.20 -4.29 16 5 N -0.30 -3.82 12.50 30.86 0.39 -3.43 16 6 C 0.09 1.08 11.18 -16.98 -0.19 0.89 16 7 C -0.28 -3.90 4.24 -105.07 -0.45 -4.34 16 8 C 0.60 9.14 4.60 -12.52 -0.06 9.08 16 9 O -0.55 -9.45 13.61 5.27 0.07 -9.38 16 10 N -0.60 -9.10 2.97 -173.45 -0.51 -9.62 16 11 C 0.11 1.71 6.34 -3.37 -0.02 1.68 16 12 C 0.05 0.98 5.47 -3.46 -0.02 0.96 16 13 N -0.53 -11.00 4.62 -235.47 -1.09 -12.09 16 14 C 0.19 4.90 4.72 -4.98 -0.02 4.88 16 15 C -0.51 -13.81 8.41 -34.44 -0.29 -14.10 16 16 H 0.06 1.70 7.13 -52.49 -0.37 1.32 16 17 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 18 N -0.90 -26.20 13.29 55.43 0.74 -25.47 16 19 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 22 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 23 C 0.04 0.73 5.62 -3.70 -0.02 0.71 16 24 C 0.12 1.80 6.61 -3.60 -0.02 1.78 16 25 C 0.17 2.14 6.66 -81.60 -0.54 1.59 16 26 C -0.12 -1.32 5.79 -91.77 -0.53 -1.85 16 27 C -0.16 -1.93 9.57 -26.73 -0.26 -2.19 16 28 C -0.15 -1.66 9.70 -26.73 -0.26 -1.92 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.09 0.55 7.49 -51.93 -0.39 0.17 16 35 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.19 1.92 8.06 -52.49 -0.42 1.50 16 37 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 38 H 0.08 1.11 5.98 -51.93 -0.31 0.80 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.09 1.87 6.67 -51.93 -0.35 1.53 16 41 H -0.01 -0.26 8.12 -51.93 -0.42 -0.69 16 42 H 0.03 0.85 7.97 -51.93 -0.41 0.44 16 43 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 44 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.08 1.38 7.99 -51.93 -0.41 0.97 16 46 H 0.09 1.33 7.04 -51.93 -0.37 0.96 16 47 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 48 H 0.12 0.98 7.64 -51.93 -0.40 0.58 16 49 H 0.11 1.61 4.75 -51.92 -0.25 1.37 16 50 H 0.10 1.10 8.14 -51.93 -0.42 0.67 16 51 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 52 H 0.12 1.57 6.48 -51.93 -0.34 1.23 16 LS Contribution 409.42 15.07 6.17 6.17 Total: -1.00 -31.88 409.42 -10.71 -42.59 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -8.65 Total: 1.37 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: -2.60 Total: -1.99 kcal Atomic # 7 Polarization: -54.21 SS G_CDS: -0.68 Total: -54.89 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: 0.07 Total: -9.38 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -31.88 -10.71 -42.59 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602204021.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.438 kcal (2) G-P(sol) polarization free energy of solvation -31.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds