Wall clock time and date at job start Wed Apr 1 2020 04:22:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47347 * 2 1 4 4 N 1.46505 * 109.47341 * 179.97438 * 3 2 1 5 5 N 1.39932 * 125.75288 * 269.69545 * 4 3 2 6 6 C 1.30447 * 108.89353 * 179.84946 * 5 4 3 7 7 C 1.41287 * 108.02449 * 0.40063 * 6 5 4 8 8 C 1.47431 * 126.41338 * 179.76621 * 7 6 5 9 9 O 1.21604 * 119.99738 * 245.21175 * 8 7 6 10 10 N 1.34769 * 120.00184 * 65.21845 * 8 7 6 11 11 C 1.47079 * 120.88275 * 4.89225 * 10 8 7 12 12 C 1.53687 * 108.27805 * 128.75730 * 11 10 8 13 13 N 1.46905 * 109.26005 * 54.08598 * 12 11 10 14 14 C 1.46892 * 111.00275 * 172.61074 * 13 12 11 15 15 C 1.50700 * 109.46804 * 294.29746 * 14 13 12 16 16 H 1.07993 * 120.00392 * 359.97438 * 15 14 13 17 17 C 1.37884 * 119.99749 * 180.02562 * 15 14 13 18 18 N 1.31506 * 120.00088 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99517 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47143 * 90.00023 * 19 17 15 21 21 H 1.48508 * 109.46870 * 209.99491 * 19 17 15 22 22 H 1.48495 * 109.47341 * 329.99642 * 19 17 15 23 23 C 1.46904 * 111.26153 * 296.75539 * 13 12 11 24 24 C 1.47086 * 120.88031 * 185.17189 * 10 8 7 25 25 C 1.34257 * 125.75132 * 89.99881 * 4 3 2 26 26 C 1.50698 * 126.29283 * 0.02562 * 25 4 3 27 27 C 1.52998 * 117.49861 * 196.34146 * 26 25 4 28 28 C 1.53000 * 117.50152 * 127.71609 * 26 25 4 29 29 H 1.08997 * 109.46858 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46922 * 59.99984 * 1 2 3 31 31 H 1.09001 * 109.46664 * 299.99910 * 1 2 3 32 32 H 1.09006 * 109.47113 * 120.00657 * 2 1 3 33 33 H 1.08997 * 109.47081 * 239.99492 * 2 1 3 34 34 H 1.08998 * 109.47123 * 299.99893 * 3 2 1 35 35 H 1.08997 * 109.46965 * 59.99941 * 3 2 1 36 36 H 1.08000 * 125.98647 * 180.15107 * 6 5 4 37 37 H 1.09006 * 109.62417 * 248.52644 * 11 10 8 38 38 H 1.08992 * 109.62629 * 9.10181 * 11 10 8 39 39 H 1.08996 * 109.65214 * 294.07939 * 12 11 10 40 40 H 1.08999 * 109.42107 * 173.94856 * 12 11 10 41 41 H 1.09000 * 109.47524 * 54.29668 * 14 13 12 42 42 H 1.09000 * 109.47232 * 174.30063 * 14 13 12 43 43 H 0.97003 * 119.99829 * 179.97438 * 18 17 15 44 44 H 1.08997 * 109.49355 * 303.14389 * 23 13 12 45 45 H 1.09005 * 109.50972 * 183.07795 * 23 13 12 46 46 H 1.08997 * 109.62795 * 350.89653 * 24 10 8 47 47 H 1.09001 * 109.62897 * 111.47619 * 24 10 8 48 48 H 1.09002 * 115.55130 * 342.04199 * 26 25 4 49 49 H 1.09007 * 117.49972 * 359.97438 * 27 26 25 50 50 H 1.09000 * 117.50528 * 145.01947 * 27 26 25 51 51 H 1.08996 * 117.50209 * 214.97695 * 28 26 25 52 52 H 1.09002 * 117.49498 * 0.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4424 0.0006 5 7 4.3222 1.4486 1.1366 6 6 5.5708 1.4433 0.7588 7 6 5.6002 1.4428 -0.6538 8 6 6.8045 1.4423 -1.5041 9 8 7.0466 2.3982 -2.2158 10 7 7.6371 0.3826 -1.4927 11 6 7.3094 -0.8267 -0.7224 12 6 7.4445 -2.0423 -1.6530 13 7 8.7805 -2.0388 -2.2638 14 6 9.0156 -3.2742 -3.0230 15 6 9.0490 -4.4466 -2.0767 16 1 8.9100 -4.2896 -1.0173 17 6 9.2581 -5.7196 -2.5635 18 7 9.4278 -5.9107 -3.8534 19 14 9.3002 -7.1727 -1.3903 20 1 7.9302 -7.7246 -1.2365 21 1 10.1985 -8.2225 -1.9348 22 1 9.8056 -6.7263 -0.0673 23 6 8.9758 -0.8549 -3.1113 24 6 8.9006 0.4071 -2.2454 25 6 4.2900 1.4422 -1.0886 26 6 3.8260 1.4425 -2.5224 27 6 4.8474 1.0604 -3.5955 28 6 4.3988 2.5160 -3.4501 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5140 0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.6768 1.9563 -0.8900 35 1 1.6767 1.9562 0.8900 36 1 6.4313 1.4438 1.4114 37 1 7.9992 -0.9249 0.1159 38 1 6.2864 -0.7590 -0.3524 39 1 6.6870 -1.9913 -2.4351 40 1 7.3109 -2.9572 -1.0759 41 1 8.2127 -3.4143 -3.7468 42 1 9.9687 -3.2029 -3.5470 43 1 9.5753 -6.8063 -4.1958 44 1 8.1969 -0.8203 -3.8730 45 1 9.9526 -0.9084 -3.5921 46 1 8.9300 1.2909 -2.8827 47 1 9.7403 0.4251 -1.5507 48 1 2.7911 1.1397 -2.6817 49 1 5.8552 0.8092 -3.2645 50 1 4.4847 0.5060 -4.4611 51 1 3.7409 2.9191 -4.2199 52 1 5.1115 3.2217 -3.0234 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602204021.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:04 Heat of formation + Delta-G solvation = 57.705428 kcal Electronic energy + Delta-G solvation = -31782.801781 eV Core-core repulsion = 27784.175959 eV Total energy + Delta-G solvation = -3998.625823 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -42.72641 -40.82460 -38.96001 -37.89483 -36.37865 -35.88518 -34.38353 -32.73483 -32.19719 -31.06186 -29.89856 -27.80630 -26.97539 -25.11067 -24.62893 -23.88756 -23.43805 -23.00302 -22.74956 -21.73106 -20.83933 -19.59142 -18.62985 -18.47753 -17.74199 -17.09954 -16.69114 -16.34056 -16.04524 -15.97815 -15.95153 -15.74880 -15.52507 -15.39374 -15.27848 -14.76208 -14.72033 -14.29156 -14.14230 -13.96463 -13.52999 -13.20454 -13.05801 -13.00642 -12.75500 -12.66240 -12.60195 -12.43667 -12.39720 -12.32260 -12.27866 -12.19592 -12.10148 -11.99682 -11.74053 -11.73516 -11.40945 -11.26931 -10.89141 -10.61288 -10.24989 -9.74942 -9.51205 -9.04478 -8.19531 -6.29485 0.53084 1.27798 1.32997 1.42963 1.44265 1.55801 1.72098 2.13514 2.41494 2.88040 3.12926 3.23864 3.28669 3.39793 3.68754 3.80445 3.84913 3.88822 3.97836 4.00381 4.03092 4.08642 4.23477 4.25085 4.32813 4.38470 4.43682 4.49292 4.52224 4.59831 4.66468 4.72123 4.76597 4.79263 4.85715 4.91856 4.94427 5.01526 5.07167 5.11236 5.12766 5.20208 5.22348 5.25248 5.34130 5.39240 5.52581 5.65006 5.87498 6.03568 6.23777 6.43171 6.54609 6.57783 6.86305 7.15768 7.40350 8.91738 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010727 B = 0.003116 C = 0.002743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2609.691413 B = 8983.097481 C =10206.911855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.136 4.136 3 C 0.121 3.879 4 N -0.352 5.352 5 N -0.311 5.311 6 C 0.084 3.916 7 C -0.308 4.308 8 C 0.605 3.395 9 O -0.570 6.570 10 N -0.603 5.603 11 C 0.131 3.869 12 C 0.057 3.943 13 N -0.537 5.537 14 C 0.210 3.790 15 C -0.521 4.521 16 H 0.068 0.932 17 C 0.002 3.998 18 N -0.935 5.935 19 Si 0.968 3.032 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.262 1.262 23 C 0.045 3.955 24 C 0.128 3.872 25 C 0.168 3.832 26 C -0.112 4.112 27 C -0.175 4.175 28 C -0.141 4.141 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.117 0.883 35 H 0.108 0.892 36 H 0.206 0.794 37 H 0.086 0.914 38 H 0.093 0.907 39 H 0.011 0.989 40 H 0.081 0.919 41 H -0.041 1.041 42 H 0.006 0.994 43 H 0.264 0.736 44 H 0.015 0.985 45 H 0.083 0.917 46 H 0.094 0.906 47 H 0.085 0.915 48 H 0.147 0.853 49 H 0.076 0.924 50 H 0.114 0.886 51 H 0.128 0.872 52 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.417 16.473 6.669 24.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.175 4.175 3 C 0.002 3.998 4 N -0.131 5.131 5 N -0.130 5.130 6 C -0.103 4.103 7 C -0.323 4.323 8 C 0.395 3.605 9 O -0.450 6.450 10 N -0.335 5.335 11 C 0.008 3.992 12 C -0.072 4.072 13 N -0.261 5.261 14 C 0.084 3.916 15 C -0.559 4.559 16 H 0.086 0.914 17 C -0.196 4.196 18 N -0.576 5.576 19 Si 0.793 3.207 20 H -0.199 1.199 21 H -0.210 1.210 22 H -0.186 1.186 23 C -0.085 4.085 24 C 0.005 3.995 25 C 0.036 3.964 26 C -0.132 4.132 27 C -0.213 4.213 28 C -0.178 4.178 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.135 0.865 35 H 0.126 0.874 36 H 0.223 0.777 37 H 0.104 0.896 38 H 0.111 0.889 39 H 0.030 0.970 40 H 0.099 0.901 41 H -0.024 1.024 42 H 0.024 0.976 43 H 0.073 0.927 44 H 0.034 0.966 45 H 0.101 0.899 46 H 0.112 0.888 47 H 0.103 0.897 48 H 0.165 0.835 49 H 0.095 0.905 50 H 0.132 0.868 51 H 0.146 0.854 52 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -17.874 16.872 7.610 25.731 hybrid contribution 0.500 -1.306 -1.176 1.827 sum -17.375 15.566 6.434 24.199 Atomic orbital electron populations 1.21670 0.92397 1.02948 1.03206 1.21884 0.98176 0.94895 1.02535 1.22232 0.71807 0.99420 1.06331 1.48614 1.07588 1.54708 1.02189 1.77121 1.01977 1.25755 1.08178 1.24167 0.95824 0.97381 0.92922 1.19854 0.92599 1.25252 0.94548 1.17399 0.81609 0.81356 0.80167 1.90712 1.75187 1.35789 1.43310 1.48169 1.21018 1.15385 1.48935 1.21886 1.01982 0.81736 0.93619 1.22360 0.88887 0.98847 0.97143 1.62013 1.27744 1.02336 1.34047 1.19356 0.93559 0.86856 0.91853 1.21455 1.48515 0.91516 0.94448 0.91423 1.25904 0.94856 1.02079 0.96763 1.70088 1.50391 1.22907 1.14188 0.85401 0.78098 0.78192 0.79053 1.19898 1.21027 1.18641 1.22431 1.00915 0.90832 0.94278 1.21660 0.85467 0.97146 0.95190 1.20652 0.89392 0.96381 0.90012 1.20683 1.00292 1.08139 0.84054 1.23135 0.98382 0.99926 0.99847 1.23173 1.02517 0.91657 1.00485 0.91948 0.90978 0.91496 0.92449 0.91946 0.86454 0.87409 0.77747 0.89584 0.88926 0.97036 0.90054 1.02376 0.97560 0.92744 0.96625 0.89897 0.88797 0.89721 0.83492 0.90530 0.86811 0.85425 0.89060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 9.91 71.98 0.71 -0.43 16 2 C -0.14 -1.71 6.26 30.59 0.19 -1.52 16 3 C 0.12 1.56 6.12 86.38 0.53 2.09 16 4 N -0.35 -7.38 3.58 -333.00 -1.19 -8.57 16 5 N -0.31 -7.57 12.50 -56.28 -0.70 -8.28 16 6 C 0.08 2.00 11.18 85.65 0.96 2.96 16 7 C -0.31 -8.21 4.24 -20.15 -0.09 -8.29 16 8 C 0.61 18.28 4.60 86.67 0.40 18.68 16 9 O -0.57 -19.72 13.61 -4.04 -0.06 -19.77 16 10 N -0.60 -18.00 2.97 -820.94 -2.44 -20.44 16 11 C 0.13 3.82 6.34 86.50 0.55 4.37 16 12 C 0.06 2.12 5.47 86.53 0.47 2.59 16 13 N -0.54 -22.58 4.62 -898.90 -4.15 -26.74 16 14 C 0.21 11.02 4.72 85.56 0.40 11.43 16 15 C -0.52 -28.75 8.41 25.60 0.22 -28.53 16 16 H 0.07 3.61 7.13 -2.91 -0.02 3.59 16 17 C 0.00 0.11 5.46 84.66 0.46 0.57 16 18 N -0.94 -55.75 13.29 21.45 0.28 -55.47 16 19 Si 0.97 43.39 29.54 68.60 2.03 45.42 16 20 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 21 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 22 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 23 C 0.04 1.60 5.62 86.38 0.49 2.09 16 24 C 0.13 3.88 6.61 86.35 0.57 4.45 16 25 C 0.17 3.95 6.66 42.14 0.28 4.23 16 26 C -0.11 -2.19 5.79 -11.54 -0.07 -2.26 16 27 C -0.18 -4.17 9.57 30.59 0.29 -3.88 16 28 C -0.14 -2.89 9.70 30.60 0.30 -2.59 16 29 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.06 0.92 8.14 -2.38 -0.02 0.91 16 33 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.12 0.96 7.49 -2.39 -0.02 0.95 16 35 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.21 3.88 8.06 -2.91 -0.02 3.85 16 37 H 0.09 2.36 8.14 -2.38 -0.02 2.34 16 38 H 0.09 2.51 5.98 -2.39 -0.01 2.49 16 39 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 40 H 0.08 3.26 6.67 -2.39 -0.02 3.24 16 41 H -0.04 -2.40 8.12 -2.39 -0.02 -2.42 16 42 H 0.01 0.36 7.97 -2.39 -0.02 0.34 16 43 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 44 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 45 H 0.08 2.92 7.99 -2.38 -0.02 2.90 16 46 H 0.09 2.80 7.04 -2.39 -0.02 2.78 16 47 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 48 H 0.15 1.95 7.64 -2.39 -0.02 1.94 16 49 H 0.08 2.34 4.75 -2.38 -0.01 2.33 16 50 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 51 H 0.13 1.83 8.14 -2.39 -0.02 1.81 16 52 H 0.09 2.41 6.48 -2.39 -0.02 2.39 16 Total: -1.00 -70.24 409.42 1.34 -68.89 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: 0.91 Total: 19.00 kcal Atomic # 6 Polarization: -0.72 SS G_CDS: 6.67 Total: 5.95 kcal Atomic # 7 Polarization: -111.29 SS G_CDS: -8.20 Total: -119.49 kcal Atomic # 8 Polarization: -19.72 SS G_CDS: -0.06 Total: -19.77 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Total: -70.24 1.34 -68.89 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602204021.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.600 kcal (2) G-P(sol) polarization free energy of solvation -70.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds