Wall clock time and date at job start Wed Apr 1 2020 04:00:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47143 * 2 1 4 4 H 1.09002 * 109.47193 * 55.00525 * 3 2 1 5 5 C 1.50704 * 109.47150 * 175.00308 * 3 2 1 6 6 H 1.07996 * 120.00225 * 120.00183 * 5 3 2 7 7 C 1.37877 * 119.99828 * 299.99760 * 5 3 2 8 8 N 1.31516 * 119.99887 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99849 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47371 * 60.00587 * 9 7 5 11 11 H 1.48506 * 109.46842 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47319 * 299.99912 * 9 7 5 13 13 N 1.46501 * 109.47274 * 294.99915 * 3 2 1 14 14 C 1.34781 * 119.99505 * 85.00099 * 13 3 2 15 15 O 1.21592 * 120.00015 * 359.97438 * 14 13 3 16 16 N 1.34777 * 119.99405 * 180.02562 * 14 13 3 17 17 C 1.40208 * 119.99761 * 185.63778 * 16 14 13 18 18 C 1.38653 * 120.09414 * 24.75605 * 17 16 14 19 19 C 1.38240 * 120.00482 * 179.97438 * 18 17 16 20 20 C 1.38278 * 120.19586 * 0.02562 * 19 18 17 21 21 C 1.38228 * 120.19019 * 0.02562 * 20 19 18 22 22 C 1.38705 * 119.99167 * 0.02562 * 21 20 19 23 23 N 1.39924 * 120.09519 * 179.97438 * 22 21 20 24 24 C 1.46959 * 111.00259 * 63.79740 * 23 22 21 25 25 C 1.53048 * 109.36484 * 176.81310 * 24 23 22 26 26 N 1.46954 * 109.36512 * 58.40214 * 25 24 23 27 27 C 1.46907 * 110.99726 * 176.81069 * 26 25 24 28 28 C 1.46955 * 110.88099 * 300.67413 * 26 25 24 29 29 C 1.46967 * 110.99988 * 299.99851 * 23 22 21 30 30 H 1.08994 * 109.46826 * 179.97438 * 1 2 3 31 31 H 1.09009 * 109.46752 * 299.99933 * 1 2 3 32 32 H 1.09001 * 109.47313 * 59.99839 * 1 2 3 33 33 H 1.08999 * 109.47221 * 240.00317 * 2 1 3 34 34 H 1.09001 * 109.47313 * 120.00160 * 2 1 3 35 35 H 0.97006 * 119.99714 * 179.97438 * 8 7 5 36 36 H 0.97000 * 120.00280 * 265.00481 * 13 3 2 37 37 H 0.96999 * 120.00744 * 5.64019 * 16 14 13 38 38 H 1.08001 * 119.99991 * 0.27835 * 18 17 16 39 39 H 1.08004 * 119.90451 * 179.97438 * 19 18 17 40 40 H 1.08002 * 119.90123 * 180.02562 * 20 19 18 41 41 H 1.07997 * 120.00140 * 180.02562 * 21 20 19 42 42 H 1.08999 * 109.48762 * 296.77991 * 24 23 22 43 43 H 1.08999 * 109.48946 * 56.84479 * 24 23 22 44 44 H 1.09001 * 109.48817 * 298.43053 * 25 24 23 45 45 H 1.08999 * 109.48789 * 178.36874 * 25 24 23 46 46 H 1.08998 * 109.46922 * 183.79706 * 27 26 25 47 47 H 1.08997 * 109.47094 * 303.79979 * 27 26 25 48 48 H 1.09001 * 109.47084 * 63.80327 * 27 26 25 49 49 H 1.08999 * 109.49110 * 299.35687 * 28 26 25 50 50 H 1.08998 * 109.50828 * 179.29556 * 28 26 25 51 51 H 1.09000 * 109.48640 * 303.15112 * 29 23 22 52 52 H 1.08991 * 109.48565 * 63.19892 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8419 5 6 3.5420 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8784 1.2279 8 7 3.4063 0.3366 2.1728 9 14 6.0051 0.8800 1.3810 10 1 6.5006 2.2798 1.3807 11 1 6.3979 0.2156 2.6497 12 1 6.5967 0.1451 0.2341 13 7 1.6525 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3415 2.6318 -0.4319 16 7 0.0784 3.2666 -2.5187 17 6 -1.1384 3.9582 -2.6005 18 6 -1.7253 4.4707 -1.4536 19 6 -2.9249 5.1528 -1.5365 20 6 -3.5433 5.3259 -2.7611 21 6 -2.9659 4.8174 -3.9095 22 6 -1.7630 4.1308 -3.8352 23 7 -1.1769 3.6148 -4.9963 24 6 -0.8039 4.6933 -5.9222 25 6 -0.0963 4.0946 -7.1401 26 7 -0.9879 3.1272 -7.7948 27 6 -0.3725 2.5854 -9.0138 28 6 -1.3608 2.0486 -6.8690 29 6 -2.0685 2.6473 -5.6511 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8901 32 1 -0.3634 0.5139 -0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 3.8294 -0.0619 2.9494 36 1 2.2719 2.1231 -1.9978 37 1 0.6635 3.2214 -3.2911 38 1 -1.2429 4.3413 -0.4961 39 1 -3.3808 5.5510 -0.6420 40 1 -4.4802 5.8600 -2.8204 41 1 -3.4514 4.9548 -4.8644 42 1 -1.7010 5.2211 -6.2458 43 1 -0.1337 5.3897 -5.4182 44 1 0.8151 3.5900 -6.8194 45 1 0.1554 4.8898 -7.8417 46 1 -1.0794 1.9238 -9.5144 47 1 -0.1062 3.4047 -9.6814 48 1 0.5246 2.0254 -8.7498 49 1 -0.4638 1.5208 -6.5453 50 1 -2.0309 1.3519 -7.3727 51 1 -2.3202 1.8520 -4.9495 52 1 -2.9800 3.1518 -5.9713 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771757760.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:23 Heat of formation + Delta-G solvation = 21.049364 kcal Electronic energy + Delta-G solvation = -31506.254190 eV Core-core repulsion = 27506.038841 eV Total energy + Delta-G solvation = -4000.215349 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.67153 -39.48776 -38.15505 -35.55045 -35.27357 -34.03517 -32.40476 -31.20469 -30.93319 -30.32408 -29.17677 -27.39134 -26.69404 -24.15079 -23.83553 -23.33506 -22.63790 -21.56901 -20.49520 -19.83100 -19.48205 -18.08400 -17.59910 -16.86883 -16.00716 -15.57145 -15.46035 -15.24154 -15.12758 -15.06028 -14.92713 -14.68683 -14.34342 -13.96365 -13.75910 -13.39096 -13.19249 -12.85654 -12.79377 -12.64115 -12.44370 -12.22576 -11.91485 -11.77089 -11.56289 -11.54510 -11.52683 -11.24220 -11.18668 -10.98409 -10.90848 -10.82897 -10.31100 -10.17107 -10.10015 -9.57990 -9.28691 -9.03109 -8.77487 -8.61360 -8.57057 -8.50167 -7.93877 -7.55735 -6.12513 -4.21802 1.39214 1.57496 3.24465 3.25574 3.30826 3.34454 3.58243 3.66061 3.70222 4.12546 4.32498 4.59811 4.73630 4.90167 4.97413 4.99919 5.06016 5.08863 5.16785 5.19055 5.23661 5.25377 5.27635 5.40916 5.52634 5.54723 5.58793 5.64816 5.65898 5.82397 5.83990 6.07765 6.33480 6.42721 6.44505 6.50516 6.61939 6.66374 6.68822 6.69504 6.81656 6.82923 7.01669 7.08759 7.16067 7.38676 7.40343 7.47579 7.51325 7.64854 7.88538 8.02412 8.19502 8.74684 8.87055 9.27992 9.47087 10.92760 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011177 B = 0.002971 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2504.507859 B = 9423.449206 C =10864.539155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.128 4.128 3 C 0.287 3.713 4 H 0.050 0.950 5 C -0.535 4.535 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.718 5.718 14 C 0.692 3.308 15 O -0.577 6.577 16 N -0.682 5.682 17 C 0.215 3.785 18 C -0.131 4.131 19 C -0.098 4.098 20 C -0.146 4.146 21 C -0.125 4.125 22 C 0.035 3.965 23 N -0.498 5.498 24 C 0.061 3.939 25 C 0.056 3.944 26 N -0.546 5.546 27 C 0.025 3.975 28 C 0.056 3.944 29 C 0.065 3.935 30 H 0.020 0.980 31 H 0.050 0.950 32 H 0.038 0.962 33 H 0.029 0.971 34 H 0.099 0.901 35 H 0.265 0.735 36 H 0.385 0.615 37 H 0.407 0.593 38 H 0.154 0.846 39 H 0.122 0.878 40 H 0.116 0.884 41 H 0.117 0.883 42 H 0.046 0.954 43 H 0.081 0.919 44 H 0.045 0.955 45 H 0.079 0.921 46 H 0.067 0.933 47 H 0.067 0.933 48 H 0.027 0.973 49 H 0.045 0.955 50 H 0.080 0.920 51 H 0.082 0.918 52 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.222 7.559 -18.905 22.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.167 4.167 3 C 0.186 3.814 4 H 0.068 0.932 5 C -0.573 4.573 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.369 5.369 14 C 0.392 3.608 15 O -0.455 6.455 16 N -0.327 5.327 17 C 0.116 3.884 18 C -0.152 4.152 19 C -0.116 4.116 20 C -0.166 4.166 21 C -0.146 4.146 22 C -0.062 4.062 23 N -0.220 5.220 24 C -0.066 4.066 25 C -0.072 4.072 26 N -0.271 5.271 27 C -0.123 4.123 28 C -0.072 4.072 29 C -0.062 4.062 30 H 0.039 0.961 31 H 0.069 0.931 32 H 0.057 0.943 33 H 0.048 0.952 34 H 0.117 0.883 35 H 0.075 0.925 36 H 0.217 0.783 37 H 0.243 0.757 38 H 0.172 0.828 39 H 0.140 0.860 40 H 0.134 0.866 41 H 0.135 0.865 42 H 0.065 0.935 43 H 0.099 0.901 44 H 0.063 0.937 45 H 0.098 0.902 46 H 0.086 0.914 47 H 0.086 0.914 48 H 0.046 0.954 49 H 0.063 0.937 50 H 0.098 0.902 51 H 0.100 0.900 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -10.750 7.326 -17.798 22.046 hybrid contribution 1.546 -0.155 -0.738 1.720 sum -9.204 7.171 -18.536 21.903 Atomic orbital electron populations 1.21811 0.98242 0.97855 1.01314 1.21954 0.92707 0.99895 1.02160 1.18702 0.93924 0.88871 0.79944 0.93211 1.21188 0.90697 1.39142 1.06299 0.92184 1.24869 0.98567 0.94804 0.95369 1.69888 1.35196 1.37461 1.09343 0.86514 0.84872 0.78296 0.77438 1.20197 1.21130 1.20203 1.45847 1.13068 1.58732 1.19225 1.16138 0.83560 0.78727 0.82327 1.90850 1.51588 1.64437 1.38611 1.42806 1.20276 1.54894 1.14703 1.17440 0.86286 0.92384 0.92323 1.21566 0.96797 0.97458 0.99392 1.21090 0.95153 0.97946 0.97455 1.20879 1.00574 1.02683 0.92505 1.21256 0.95611 0.99087 0.98598 1.18300 0.94349 1.03542 0.90038 1.59630 1.42503 1.15300 1.04584 1.22238 0.99788 0.92704 0.91878 1.22196 0.94282 0.95697 0.95072 1.62179 1.42567 1.15865 1.06452 1.22343 0.97914 0.99799 0.92268 1.22198 0.99825 0.92879 0.92327 1.22185 0.93853 0.95440 0.94709 0.96081 0.93137 0.94253 0.95169 0.88304 0.92491 0.78279 0.75747 0.82817 0.86012 0.86580 0.86536 0.93532 0.90097 0.93719 0.90218 0.91372 0.91404 0.95430 0.93659 0.90192 0.89998 0.93550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.05 8.51 37.16 0.32 -2.74 16 2 C -0.13 -3.11 5.45 -26.73 -0.15 -3.26 16 3 C 0.29 7.13 2.24 -69.08 -0.15 6.97 16 4 H 0.05 1.43 7.58 -51.93 -0.39 1.04 16 5 C -0.53 -13.94 8.73 -34.44 -0.30 -14.24 16 6 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.47 11.29 55.43 0.63 -23.84 16 9 Si 0.90 20.44 29.54 -169.99 -5.02 15.42 16 10 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 11 H -0.29 -6.48 7.11 56.52 0.40 -6.07 16 12 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 13 N -0.72 -14.71 5.03 -59.81 -0.30 -15.01 16 14 C 0.69 13.73 6.94 -86.91 -0.60 13.12 16 15 O -0.58 -13.14 10.65 5.28 0.06 -13.08 16 16 N -0.68 -10.87 5.28 -14.07 -0.07 -10.95 16 17 C 0.21 3.31 6.45 -83.42 -0.54 2.77 16 18 C -0.13 -2.10 8.71 -39.43 -0.34 -2.44 16 19 C -0.10 -1.29 10.04 -39.57 -0.40 -1.68 16 20 C -0.15 -1.70 10.04 -39.57 -0.40 -2.10 16 21 C -0.13 -1.46 8.64 -39.41 -0.34 -1.80 16 22 C 0.03 0.45 4.74 -83.54 -0.40 0.05 16 23 N -0.50 -5.59 4.02 -170.77 -0.69 -6.27 16 24 C 0.06 0.59 5.36 -3.77 -0.02 0.57 16 25 C 0.06 0.48 5.62 -3.77 -0.02 0.46 16 26 N -0.55 -4.86 4.97 -242.76 -1.21 -6.07 16 27 C 0.02 0.18 9.60 60.07 0.58 0.76 16 28 C 0.06 0.52 5.62 -3.77 -0.02 0.50 16 29 C 0.07 0.68 5.31 -3.76 -0.02 0.66 16 30 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.05 1.21 7.84 -51.92 -0.41 0.80 16 32 H 0.04 0.88 5.64 -51.93 -0.29 0.59 16 33 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.10 2.65 5.95 -51.93 -0.31 2.34 16 35 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 36 H 0.39 6.93 8.56 -40.82 -0.35 6.58 16 37 H 0.41 5.65 8.30 -40.82 -0.34 5.31 16 38 H 0.15 2.86 5.80 -52.49 -0.30 2.56 16 39 H 0.12 1.36 8.06 -52.48 -0.42 0.94 16 40 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 41 H 0.12 1.19 7.06 -52.49 -0.37 0.82 16 42 H 0.05 0.46 7.45 -51.93 -0.39 0.07 16 43 H 0.08 0.77 8.13 -51.93 -0.42 0.35 16 44 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 45 H 0.08 0.59 8.13 -51.93 -0.42 0.16 16 46 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.07 0.43 8.13 -51.93 -0.42 0.00 16 48 H 0.03 0.20 8.14 -51.93 -0.42 -0.22 16 49 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 50 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 51 H 0.08 0.94 8.13 -51.93 -0.42 0.52 16 52 H 0.05 0.48 7.24 -51.93 -0.38 0.10 16 LS Contribution 402.50 15.07 6.07 6.07 Total: -1.00 -29.18 402.50 -12.00 -41.18 By element: Atomic # 1 Polarization: 21.83 SS G_CDS: -8.56 Total: 13.26 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: -2.90 Total: -0.71 kcal Atomic # 7 Polarization: -60.50 SS G_CDS: -1.64 Total: -62.15 kcal Atomic # 8 Polarization: -13.14 SS G_CDS: 0.06 Total: -13.08 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -29.18 -12.00 -41.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771757760.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.233 kcal (2) G-P(sol) polarization free energy of solvation -29.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds