Wall clock time and date at job start Wed Apr 1 2020 04:00:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47143 * 2 1 4 4 H 1.09002 * 109.47193 * 55.00525 * 3 2 1 5 5 C 1.50704 * 109.47150 * 175.00308 * 3 2 1 6 6 H 1.07996 * 120.00225 * 120.00183 * 5 3 2 7 7 C 1.37877 * 119.99828 * 299.99760 * 5 3 2 8 8 N 1.31516 * 119.99887 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99849 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47371 * 60.00587 * 9 7 5 11 11 H 1.48506 * 109.46842 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47319 * 299.99912 * 9 7 5 13 13 N 1.46501 * 109.47274 * 294.99915 * 3 2 1 14 14 C 1.34781 * 119.99505 * 85.00099 * 13 3 2 15 15 O 1.21592 * 120.00015 * 359.97438 * 14 13 3 16 16 N 1.34777 * 119.99405 * 180.02562 * 14 13 3 17 17 C 1.40208 * 119.99761 * 185.63778 * 16 14 13 18 18 C 1.38653 * 120.09414 * 24.75605 * 17 16 14 19 19 C 1.38240 * 120.00482 * 179.97438 * 18 17 16 20 20 C 1.38278 * 120.19586 * 0.02562 * 19 18 17 21 21 C 1.38228 * 120.19019 * 0.02562 * 20 19 18 22 22 C 1.38705 * 119.99167 * 0.02562 * 21 20 19 23 23 N 1.39924 * 120.09519 * 179.97438 * 22 21 20 24 24 C 1.46959 * 111.00259 * 63.79740 * 23 22 21 25 25 C 1.53048 * 109.36484 * 176.81310 * 24 23 22 26 26 N 1.46954 * 109.36512 * 58.40214 * 25 24 23 27 27 C 1.46907 * 110.99726 * 176.81069 * 26 25 24 28 28 C 1.46955 * 110.88099 * 300.67413 * 26 25 24 29 29 C 1.46967 * 110.99988 * 299.99851 * 23 22 21 30 30 H 1.08994 * 109.46826 * 179.97438 * 1 2 3 31 31 H 1.09009 * 109.46752 * 299.99933 * 1 2 3 32 32 H 1.09001 * 109.47313 * 59.99839 * 1 2 3 33 33 H 1.08999 * 109.47221 * 240.00317 * 2 1 3 34 34 H 1.09001 * 109.47313 * 120.00160 * 2 1 3 35 35 H 0.97006 * 119.99714 * 179.97438 * 8 7 5 36 36 H 0.97000 * 120.00280 * 265.00481 * 13 3 2 37 37 H 0.96999 * 120.00744 * 5.64019 * 16 14 13 38 38 H 1.08001 * 119.99991 * 0.27835 * 18 17 16 39 39 H 1.08004 * 119.90451 * 179.97438 * 19 18 17 40 40 H 1.08002 * 119.90123 * 180.02562 * 20 19 18 41 41 H 1.07997 * 120.00140 * 180.02562 * 21 20 19 42 42 H 1.08999 * 109.48762 * 296.77991 * 24 23 22 43 43 H 1.08999 * 109.48946 * 56.84479 * 24 23 22 44 44 H 1.09001 * 109.48817 * 298.43053 * 25 24 23 45 45 H 1.08999 * 109.48789 * 178.36874 * 25 24 23 46 46 H 1.08998 * 109.46922 * 183.79706 * 27 26 25 47 47 H 1.08997 * 109.47094 * 303.79979 * 27 26 25 48 48 H 1.09001 * 109.47084 * 63.80327 * 27 26 25 49 49 H 1.08999 * 109.49110 * 299.35687 * 28 26 25 50 50 H 1.08998 * 109.50828 * 179.29556 * 28 26 25 51 51 H 1.09000 * 109.48640 * 303.15112 * 29 23 22 52 52 H 1.08991 * 109.48565 * 63.19892 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8419 5 6 3.5420 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8784 1.2279 8 7 3.4063 0.3366 2.1728 9 14 6.0051 0.8800 1.3810 10 1 6.5006 2.2798 1.3807 11 1 6.3979 0.2156 2.6497 12 1 6.5967 0.1451 0.2341 13 7 1.6525 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3415 2.6318 -0.4319 16 7 0.0784 3.2666 -2.5187 17 6 -1.1384 3.9582 -2.6005 18 6 -1.7253 4.4707 -1.4536 19 6 -2.9249 5.1528 -1.5365 20 6 -3.5433 5.3259 -2.7611 21 6 -2.9659 4.8174 -3.9095 22 6 -1.7630 4.1308 -3.8352 23 7 -1.1769 3.6148 -4.9963 24 6 -0.8039 4.6933 -5.9222 25 6 -0.0963 4.0946 -7.1401 26 7 -0.9879 3.1272 -7.7948 27 6 -0.3725 2.5854 -9.0138 28 6 -1.3608 2.0486 -6.8690 29 6 -2.0685 2.6473 -5.6511 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8901 32 1 -0.3634 0.5139 -0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 3.8294 -0.0619 2.9494 36 1 2.2719 2.1231 -1.9978 37 1 0.6635 3.2214 -3.2911 38 1 -1.2429 4.3413 -0.4961 39 1 -3.3808 5.5510 -0.6420 40 1 -4.4802 5.8600 -2.8204 41 1 -3.4514 4.9548 -4.8644 42 1 -1.7010 5.2211 -6.2458 43 1 -0.1337 5.3897 -5.4182 44 1 0.8151 3.5900 -6.8194 45 1 0.1554 4.8898 -7.8417 46 1 -1.0794 1.9238 -9.5144 47 1 -0.1062 3.4047 -9.6814 48 1 0.5246 2.0254 -8.7498 49 1 -0.4638 1.5208 -6.5453 50 1 -2.0309 1.3519 -7.3727 51 1 -2.3202 1.8520 -4.9495 52 1 -2.9800 3.1518 -5.9713 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771757760.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:22 Heat of formation + Delta-G solvation = 1.697927 kcal Electronic energy + Delta-G solvation = -31507.093331 eV Core-core repulsion = 27506.038841 eV Total energy + Delta-G solvation = -4001.054490 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.84860 -40.71423 -39.18846 -37.18366 -36.21667 -35.51122 -34.30172 -32.75023 -31.94758 -31.24346 -30.41896 -28.79667 -28.02060 -25.13151 -24.91911 -24.57980 -23.96905 -22.66729 -21.97846 -21.31819 -20.65524 -19.64646 -18.82032 -17.97398 -17.75925 -17.04280 -16.62213 -16.24757 -16.15027 -15.96932 -15.95603 -15.85254 -15.67948 -15.18149 -15.03616 -14.63463 -14.50590 -14.35357 -14.18730 -13.61316 -13.48994 -13.42806 -13.17683 -13.15173 -12.89789 -12.74206 -12.69276 -12.64248 -12.52843 -12.28073 -12.15654 -12.06240 -11.91300 -11.76052 -11.61736 -11.34599 -11.06795 -10.82732 -10.52615 -9.68992 -9.67295 -9.57113 -9.30807 -8.80928 -8.15294 -6.32376 0.34956 0.48097 1.45242 1.47074 1.54673 1.84684 2.26203 2.43155 2.73446 2.92191 2.97431 3.14124 3.49557 3.84827 4.04222 4.06367 4.19028 4.21876 4.30033 4.33828 4.38027 4.50009 4.54073 4.57907 4.60378 4.63731 4.66197 4.67891 4.75996 4.82147 4.87994 4.89413 5.01020 5.03684 5.06186 5.07879 5.21948 5.32068 5.43782 5.45243 5.54458 5.60995 5.62557 5.71329 5.76610 5.86558 5.88291 5.93401 6.07081 6.08332 6.17669 6.33790 6.45905 6.75329 7.27443 7.36037 7.74671 8.89947 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011177 B = 0.002971 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2504.507859 B = 9423.449206 C =10864.539155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.120 4.120 3 C 0.299 3.701 4 H 0.001 0.999 5 C -0.549 4.549 6 H 0.070 0.930 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.970 3.030 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.265 1.265 13 N -0.716 5.716 14 C 0.692 3.308 15 O -0.609 6.609 16 N -0.666 5.666 17 C 0.185 3.815 18 C -0.155 4.155 19 C -0.103 4.103 20 C -0.133 4.133 21 C -0.121 4.121 22 C 0.045 3.955 23 N -0.507 5.507 24 C 0.064 3.936 25 C 0.059 3.941 26 N -0.551 5.551 27 C 0.025 3.975 28 C 0.061 3.939 29 C 0.068 3.932 30 H 0.042 0.958 31 H 0.026 0.974 32 H 0.039 0.961 33 H 0.038 0.962 34 H 0.073 0.927 35 H 0.265 0.735 36 H 0.399 0.601 37 H 0.417 0.583 38 H 0.119 0.881 39 H 0.137 0.863 40 H 0.150 0.850 41 H 0.141 0.859 42 H 0.051 0.949 43 H 0.080 0.920 44 H 0.036 0.964 45 H 0.096 0.904 46 H 0.075 0.925 47 H 0.078 0.922 48 H 0.023 0.977 49 H 0.032 0.968 50 H 0.093 0.907 51 H 0.068 0.932 52 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.669 8.384 -21.900 25.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.159 4.159 3 C 0.195 3.805 4 H 0.018 0.982 5 C -0.587 4.587 6 H 0.088 0.912 7 C -0.183 4.183 8 N -0.552 5.552 9 Si 0.795 3.205 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.190 1.190 13 N -0.368 5.368 14 C 0.393 3.607 15 O -0.490 6.490 16 N -0.312 5.312 17 C 0.087 3.913 18 C -0.177 4.177 19 C -0.121 4.121 20 C -0.153 4.153 21 C -0.141 4.141 22 C -0.052 4.052 23 N -0.229 5.229 24 C -0.063 4.063 25 C -0.070 4.070 26 N -0.276 5.276 27 C -0.123 4.123 28 C -0.068 4.068 29 C -0.059 4.059 30 H 0.061 0.939 31 H 0.045 0.955 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.091 0.909 35 H 0.074 0.926 36 H 0.233 0.767 37 H 0.254 0.746 38 H 0.136 0.864 39 H 0.155 0.845 40 H 0.167 0.833 41 H 0.159 0.841 42 H 0.069 0.931 43 H 0.098 0.902 44 H 0.054 0.946 45 H 0.115 0.885 46 H 0.094 0.906 47 H 0.097 0.903 48 H 0.042 0.958 49 H 0.051 0.949 50 H 0.111 0.889 51 H 0.086 0.914 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.208 8.182 -20.867 25.060 hybrid contribution 1.561 -0.332 0.133 1.602 sum -9.647 7.850 -20.734 24.178 Atomic orbital electron populations 1.21624 0.97060 0.98786 1.00125 1.21797 0.93626 0.99327 1.01174 1.18249 0.93377 0.88737 0.80128 0.98157 1.21530 0.91368 1.39094 1.06745 0.91171 1.25740 1.03238 0.94352 0.94977 1.70042 1.37094 1.38195 1.09842 0.85436 0.79156 0.78406 0.77547 1.19724 1.21159 1.18987 1.45479 1.13859 1.59037 1.18429 1.16192 0.82934 0.78620 0.82953 1.90841 1.52446 1.65521 1.40151 1.42468 1.20899 1.54281 1.13566 1.17643 0.86481 0.93761 0.93387 1.21401 0.98370 0.99617 0.98283 1.21286 0.94186 0.97498 0.99144 1.21243 1.01180 1.01374 0.91459 1.21555 0.94882 0.97951 0.99751 1.18357 0.94402 1.02709 0.89686 1.59605 1.42723 1.16033 1.04585 1.22256 1.00003 0.92211 0.91812 1.22197 0.93686 0.96060 0.95013 1.62217 1.42875 1.15752 1.06736 1.22390 0.97879 1.00323 0.91674 1.22147 0.99443 0.93081 0.92106 1.22158 0.94098 0.94886 0.94751 0.93917 0.95458 0.94235 0.94311 0.90851 0.92561 0.76693 0.74559 0.86359 0.84471 0.83252 0.84137 0.93075 0.90180 0.94600 0.88546 0.90587 0.90298 0.95803 0.94924 0.88912 0.91397 0.92926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.52 8.51 71.98 0.61 -4.90 16 2 C -0.12 -6.00 5.45 30.59 0.17 -5.84 16 3 C 0.30 15.41 2.24 44.25 0.10 15.51 16 4 H 0.00 0.03 7.58 -2.39 -0.02 0.01 16 5 C -0.55 -29.08 8.73 25.60 0.22 -28.86 16 6 H 0.07 3.48 7.74 -2.91 -0.02 3.46 16 7 C 0.02 0.93 5.29 84.65 0.45 1.38 16 8 N -0.91 -52.21 11.29 21.45 0.24 -51.97 16 9 Si 0.97 42.03 29.54 68.60 2.03 44.06 16 10 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 11 H -0.29 -12.32 7.11 99.48 0.71 -11.61 16 12 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 13 N -0.72 -30.22 5.03 -461.39 -2.32 -32.54 16 14 C 0.69 28.60 6.94 179.05 1.24 29.85 16 15 O -0.61 -29.45 10.65 -4.01 -0.04 -29.49 16 16 N -0.67 -21.72 5.28 -316.68 -1.67 -23.39 16 17 C 0.18 5.75 6.45 38.19 0.25 6.00 16 18 C -0.16 -5.15 8.71 22.37 0.19 -4.96 16 19 C -0.10 -2.62 10.04 22.28 0.22 -2.40 16 20 C -0.13 -2.72 10.04 22.28 0.22 -2.50 16 21 C -0.12 -2.50 8.64 22.38 0.19 -2.31 16 22 C 0.05 1.11 4.74 38.25 0.18 1.29 16 23 N -0.51 -10.60 4.02 -694.18 -2.79 -13.39 16 24 C 0.06 1.09 5.36 86.31 0.46 1.55 16 25 C 0.06 0.88 5.62 86.31 0.49 1.37 16 26 N -0.55 -8.48 4.97 -921.94 -4.58 -13.06 16 27 C 0.03 0.30 9.60 127.69 1.23 1.53 16 28 C 0.06 1.01 5.62 86.31 0.49 1.50 16 29 C 0.07 1.30 5.31 86.31 0.46 1.76 16 30 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.03 1.35 7.84 -2.38 -0.02 1.34 16 32 H 0.04 1.81 5.64 -2.39 -0.01 1.80 16 33 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.07 4.08 5.95 -2.39 -0.01 4.06 16 35 H 0.27 14.40 8.31 -92.70 -0.77 13.63 16 36 H 0.40 14.46 8.56 -92.71 -0.79 13.66 16 37 H 0.42 11.60 8.30 -92.71 -0.77 10.83 16 38 H 0.12 4.77 5.80 -2.91 -0.02 4.76 16 39 H 0.14 2.97 8.06 -2.91 -0.02 2.95 16 40 H 0.15 2.10 8.06 -2.91 -0.02 2.08 16 41 H 0.14 2.28 7.06 -2.91 -0.02 2.26 16 42 H 0.05 0.84 7.45 -2.39 -0.02 0.82 16 43 H 0.08 1.38 8.13 -2.39 -0.02 1.36 16 44 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 45 H 0.10 1.14 8.13 -2.39 -0.02 1.12 16 46 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 47 H 0.08 0.77 8.13 -2.39 -0.02 0.75 16 48 H 0.02 0.30 8.14 -2.39 -0.02 0.28 16 49 H 0.03 0.63 8.14 -2.39 -0.02 0.61 16 50 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 51 H 0.07 1.49 8.13 -2.39 -0.02 1.47 16 52 H 0.05 0.95 7.24 -2.39 -0.02 0.93 16 Total: -1.00 -65.52 402.50 -2.60 -68.12 By element: Atomic # 1 Polarization: 42.33 SS G_CDS: -0.63 Total: 41.70 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: 7.17 Total: 9.96 kcal Atomic # 7 Polarization: -123.23 SS G_CDS: -11.12 Total: -134.35 kcal Atomic # 8 Polarization: -29.45 SS G_CDS: -0.04 Total: -29.49 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.06 kcal Total: -65.52 -2.60 -68.12 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771757760.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.814 kcal (2) G-P(sol) polarization free energy of solvation -65.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds