Wall clock time and date at job start Wed Apr 1 2020 04:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47114 * 2 1 4 4 N 1.46905 * 109.46925 * 179.97438 * 3 2 1 5 5 C 1.46904 * 110.99913 * 66.04695 * 4 3 2 6 6 C 1.46896 * 110.99991 * 189.99950 * 4 3 2 7 7 C 1.53001 * 109.47007 * 170.00068 * 6 4 3 8 8 H 1.08995 * 110.92096 * 57.45019 * 7 6 4 9 9 C 1.55163 * 111.00548 * 181.35037 * 7 6 4 10 10 C 1.54333 * 103.02093 * 153.37827 * 9 7 6 11 11 N 1.47014 * 107.26537 * 338.14175 * 10 9 7 12 12 C 1.34782 * 125.64762 * 178.84430 * 11 10 9 13 13 O 1.21577 * 120.00083 * 179.69058 * 12 11 10 14 14 N 1.34780 * 119.99837 * 359.69943 * 12 11 10 15 15 C 1.39457 * 120.00014 * 185.06613 * 14 12 11 16 16 C 1.38641 * 119.64729 * 185.34634 * 15 14 12 17 17 C 1.40824 * 118.67334 * 180.02562 * 16 15 14 18 18 C 1.41541 * 120.99882 * 180.02562 * 17 16 15 19 19 H 1.08006 * 119.99816 * 333.75900 * 18 17 16 20 20 C 1.40027 * 120.00004 * 153.75413 * 18 17 16 21 21 N 1.30742 * 120.00181 * 350.10780 * 20 18 17 22 22 Si 1.86800 * 119.99961 * 170.10464 * 20 18 17 23 23 H 1.48511 * 109.46977 * 60.00415 * 22 20 18 24 24 H 1.48497 * 109.47114 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47356 * 300.00448 * 22 20 18 26 26 C 1.41167 * 118.00542 * 0.02562 * 17 16 15 27 27 C 1.36590 * 119.12622 * 359.97438 * 26 17 16 28 28 N 1.32073 * 121.26156 * 0.02562 * 27 26 17 29 29 C 1.47426 * 108.70552 * 358.58602 * 11 10 9 30 30 H 1.08997 * 109.46935 * 300.00630 * 1 2 3 31 31 H 1.09010 * 109.47010 * 60.00094 * 1 2 3 32 32 H 1.08993 * 109.47367 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.46935 * 239.99370 * 2 1 3 34 34 H 1.09001 * 109.46743 * 119.99786 * 2 1 3 35 35 H 1.08997 * 109.47734 * 59.99860 * 3 2 1 36 36 H 1.09001 * 109.47141 * 299.99543 * 3 2 1 37 37 H 1.09000 * 109.46848 * 183.95784 * 5 4 3 38 38 H 1.09004 * 109.46888 * 303.95183 * 5 4 3 39 39 H 1.08991 * 109.46958 * 63.95290 * 5 4 3 40 40 H 1.08998 * 109.47231 * 50.00045 * 6 4 3 41 41 H 1.09002 * 109.47223 * 290.00158 * 6 4 3 42 42 H 1.08998 * 110.72128 * 271.94539 * 9 7 6 43 43 H 1.09008 * 110.71812 * 35.03366 * 9 7 6 44 44 H 1.09000 * 109.98889 * 218.66193 * 10 9 7 45 45 H 1.08999 * 109.77468 * 97.49891 * 10 9 7 46 46 H 0.96998 * 119.99478 * 5.06628 * 14 12 11 47 47 H 1.07999 * 120.66492 * 0.02569 * 16 15 14 48 48 H 0.96998 * 120.00102 * 179.97438 * 21 20 18 49 49 H 1.07998 * 120.43669 * 179.97438 * 26 17 16 50 50 H 1.07997 * 119.36771 * 179.97438 * 27 26 17 51 51 H 1.08997 * 110.36553 * 143.19685 * 29 11 10 52 52 H 1.08995 * 110.36137 * 265.51608 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5091 1.4424 0.0006 5 6 4.0360 0.8854 -1.2524 6 6 4.0354 2.7930 0.2388 7 6 5.5443 2.7170 0.4804 8 1 6.0504 2.2479 -0.3633 9 6 6.1328 4.1232 0.7698 10 6 7.3790 3.8095 1.6245 11 7 7.1779 2.4793 2.2174 12 6 8.0526 1.8342 3.0144 13 8 7.7774 0.7348 3.4545 14 7 9.2323 2.4079 3.3236 15 6 10.1808 1.6987 4.0601 16 6 11.3444 2.3316 4.4695 17 6 12.2885 1.5959 5.2116 18 6 13.4927 2.1931 5.6550 19 1 13.9111 3.0299 5.1153 20 6 14.1415 1.6991 6.7933 21 7 13.5451 0.8206 7.5561 22 14 15.8592 2.2952 7.2219 23 1 15.8349 3.7651 7.4324 24 1 16.3204 1.6244 8.4638 25 1 16.7880 1.9697 6.1098 26 6 11.9977 0.2450 5.5001 27 6 10.8239 -0.2924 5.0540 28 7 9.9607 0.4271 4.3600 29 6 5.8583 1.9707 1.8010 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8901 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.6767 1.9564 0.8899 36 1 1.6767 1.9563 -0.8900 37 1 5.1233 0.8320 -1.1974 38 1 3.6304 -0.1149 -1.4043 39 1 3.7453 1.5256 -2.0852 40 1 3.5486 3.2236 1.1138 41 1 3.8379 3.4187 -0.6316 42 1 6.4138 4.6221 -0.1577 43 1 5.4231 4.7298 1.3325 44 1 7.4873 4.5543 2.4128 45 1 8.2673 3.8033 0.9928 46 1 9.4216 3.3140 3.0339 47 1 11.5233 3.3680 4.2242 48 1 13.9947 0.4781 8.3444 49 1 12.6942 -0.3557 6.0662 50 1 10.5977 -1.3256 5.2721 51 1 5.9037 0.8955 1.6276 52 1 5.1070 2.2027 2.5557 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871725263.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:55 Heat of formation + Delta-G solvation = 14.109162 kcal Electronic energy + Delta-G solvation = -29790.479701 eV Core-core repulsion = 25789.963402 eV Total energy + Delta-G solvation = -4000.516299 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.17480 -38.91987 -37.99654 -36.83536 -34.39194 -33.87869 -33.44453 -31.62196 -30.59759 -29.35127 -28.47846 -27.53157 -26.35423 -25.92100 -23.99465 -22.50015 -21.70489 -21.47017 -21.02659 -20.22706 -19.32223 -18.00385 -17.56041 -16.54017 -16.04909 -15.82072 -15.74868 -15.11116 -14.97451 -14.75343 -14.55749 -14.21303 -14.13935 -13.88338 -13.66260 -13.28591 -13.08203 -12.95484 -12.78302 -12.52273 -12.45308 -12.31841 -12.24484 -12.09762 -12.00853 -11.73407 -11.54912 -11.38819 -11.20843 -11.08925 -11.05922 -10.92662 -10.86212 -10.70552 -10.35865 -9.97387 -9.67947 -9.47355 -9.34974 -8.62912 -8.36165 -7.95465 -7.66497 -6.95942 -6.70300 -4.58623 2.77530 2.83496 2.92691 3.03990 3.06508 3.27984 3.50741 3.87268 3.91166 4.26114 4.39114 4.48026 4.55521 4.64156 4.71787 4.75942 4.92858 4.98791 5.04258 5.09758 5.12334 5.20957 5.29285 5.38933 5.39901 5.43746 5.48338 5.51524 5.61312 5.66317 5.74300 5.75601 5.85269 5.85419 5.91032 5.97603 6.08831 6.11593 6.40719 6.65085 6.68834 6.73334 6.76014 6.84798 6.96835 7.19528 7.36874 7.49590 7.61637 7.94296 8.12771 8.37111 8.54460 8.78846 8.79698 9.20657 9.79899 10.14561 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.025877 B = 0.001779 C = 0.001698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.793486 B =15734.396895 C =16487.461418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C 0.056 3.944 4 N -0.541 5.541 5 C 0.019 3.981 6 C 0.069 3.931 7 C -0.100 4.100 8 H 0.085 0.915 9 C -0.123 4.123 10 C 0.099 3.901 11 N -0.646 5.646 12 C 0.710 3.290 13 O -0.527 6.527 14 N -0.669 5.669 15 C 0.366 3.634 16 C -0.305 4.305 17 C 0.147 3.853 18 C -0.456 4.456 19 H 0.079 0.921 20 C 0.075 3.925 21 N -0.791 5.791 22 Si 0.916 3.084 23 H -0.265 1.265 24 H -0.277 1.277 25 H -0.263 1.263 26 C -0.223 4.223 27 C 0.104 3.896 28 N -0.552 5.552 29 C 0.147 3.853 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.056 0.944 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.031 0.969 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.023 0.977 40 H 0.078 0.922 41 H 0.038 0.962 42 H 0.080 0.920 43 H 0.077 0.923 44 H 0.064 0.936 45 H 0.063 0.937 46 H 0.401 0.599 47 H 0.100 0.900 48 H 0.282 0.718 49 H 0.131 0.869 50 H 0.122 0.878 51 H 0.080 0.920 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.423 6.277 -15.506 24.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.072 4.072 4 N -0.265 5.265 5 C -0.129 4.129 6 C -0.060 4.060 7 C -0.119 4.119 8 H 0.103 0.897 9 C -0.161 4.161 10 C -0.025 4.025 11 N -0.388 5.388 12 C 0.412 3.588 13 O -0.397 6.397 14 N -0.317 5.317 15 C 0.137 3.863 16 C -0.332 4.332 17 C 0.138 3.862 18 C -0.487 4.487 19 H 0.098 0.902 20 C -0.143 4.143 21 N -0.417 5.417 22 Si 0.740 3.260 23 H -0.190 1.190 24 H -0.202 1.202 25 H -0.188 1.188 26 C -0.247 4.247 27 C -0.046 4.046 28 N -0.271 5.271 29 C 0.024 3.976 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.049 0.951 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.042 0.958 40 H 0.096 0.904 41 H 0.056 0.944 42 H 0.098 0.902 43 H 0.095 0.905 44 H 0.082 0.918 45 H 0.082 0.918 46 H 0.235 0.765 47 H 0.118 0.882 48 H 0.094 0.906 49 H 0.149 0.851 50 H 0.140 0.860 51 H 0.099 0.901 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -19.205 4.521 -14.806 24.668 hybrid contribution 1.408 1.822 -0.252 2.316 sum -17.797 6.343 -15.058 24.160 Atomic orbital electron populations 1.21737 0.95702 1.01818 1.01639 1.21556 0.95272 0.96353 1.02935 1.22162 0.86990 0.97411 1.00628 1.61959 1.07474 1.21953 1.35091 1.22488 1.01216 0.99894 0.89289 1.22052 0.94105 0.89113 1.00692 1.22407 0.95024 0.95894 0.98591 0.89662 1.22620 0.96752 0.96788 0.99987 1.21936 0.98471 0.85463 0.96648 1.47770 1.19143 1.19114 1.52778 1.15596 0.79817 0.84018 0.79416 1.91025 1.75540 1.18480 1.54653 1.42598 1.14989 1.17391 1.56686 1.17773 0.86541 0.89685 0.92258 1.21168 0.96468 0.99618 1.15919 1.17587 0.90976 0.90754 0.86863 1.19518 1.05466 1.14563 1.09188 0.90248 1.25956 0.99372 0.93602 0.95397 1.69750 1.37065 1.23319 1.11567 0.86249 0.81498 0.79794 0.78457 1.18968 1.20235 1.18793 1.22069 0.99376 0.96436 1.06782 1.21637 0.90712 0.97768 0.94515 1.67196 1.33855 1.05254 1.20830 1.21851 0.82676 0.99515 0.93585 0.92641 0.93037 0.92508 0.91980 0.90847 0.90795 0.95114 0.90990 0.91106 0.95841 0.90366 0.94418 0.90181 0.90477 0.91773 0.91828 0.76477 0.88165 0.90637 0.85108 0.86032 0.90124 0.92096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.91 37.16 0.37 -0.51 16 2 C -0.12 -0.86 5.86 -26.73 -0.16 -1.02 16 3 C 0.06 0.40 4.96 -3.82 -0.02 0.38 16 4 N -0.54 -4.51 4.58 -242.92 -1.11 -5.62 16 5 C 0.02 0.15 9.14 60.07 0.55 0.70 16 6 C 0.07 0.51 4.41 -3.83 -0.02 0.50 16 7 C -0.10 -0.87 2.90 -88.47 -0.26 -1.13 16 8 H 0.09 0.78 6.54 -51.93 -0.34 0.44 16 9 C -0.12 -0.92 6.42 -24.89 -0.16 -1.08 16 10 C 0.10 1.02 6.16 -3.06 -0.02 1.00 16 11 N -0.65 -9.67 3.33 -176.24 -0.59 -10.25 16 12 C 0.71 14.50 8.44 -86.91 -0.73 13.77 16 13 O -0.53 -13.25 14.89 5.30 0.08 -13.17 16 14 N -0.67 -13.43 5.35 -15.86 -0.08 -13.52 16 15 C 0.37 9.04 7.41 -154.68 -1.15 7.89 16 16 C -0.31 -7.56 9.74 -38.46 -0.37 -7.94 16 17 C 0.15 3.94 5.60 -106.55 -0.60 3.35 16 18 C -0.46 -11.89 9.13 -37.65 -0.34 -12.23 16 19 H 0.08 1.96 7.87 -52.48 -0.41 1.54 16 20 C 0.08 1.86 5.31 -17.35 -0.09 1.77 16 21 N -0.79 -20.24 10.70 55.55 0.59 -19.64 16 22 Si 0.92 18.28 29.57 -169.99 -5.03 13.25 16 23 H -0.27 -5.22 7.11 56.52 0.40 -4.81 16 24 H -0.28 -5.41 7.11 56.52 0.40 -5.00 16 25 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 26 C -0.22 -5.96 8.73 -39.07 -0.34 -6.30 16 27 C 0.10 2.71 11.10 -18.04 -0.20 2.51 16 28 N -0.55 -14.82 7.89 -12.76 -0.10 -14.93 16 29 C 0.15 1.89 6.20 -2.53 -0.02 1.87 16 30 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.05 0.27 8.14 -51.92 -0.42 -0.15 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.06 0.43 6.47 -51.93 -0.34 0.09 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.52 7.93 -51.93 -0.41 0.10 16 36 H 0.03 0.21 8.12 -51.93 -0.42 -0.22 16 37 H 0.07 0.59 6.45 -51.93 -0.33 0.25 16 38 H 0.07 0.52 6.30 -51.93 -0.33 0.19 16 39 H 0.02 0.16 8.14 -51.93 -0.42 -0.26 16 40 H 0.08 0.57 7.89 -51.93 -0.41 0.16 16 41 H 0.04 0.25 8.12 -51.93 -0.42 -0.17 16 42 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.08 0.51 8.04 -51.92 -0.42 0.09 16 44 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 45 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.40 6.43 7.69 -40.82 -0.31 6.12 16 47 H 0.10 2.22 8.06 -52.49 -0.42 1.80 16 48 H 0.28 6.57 8.29 -40.82 -0.34 6.24 16 49 H 0.13 3.52 6.11 -52.49 -0.32 3.20 16 50 H 0.12 2.85 8.06 -52.49 -0.42 2.43 16 51 H 0.08 1.23 8.04 -51.93 -0.42 0.81 16 52 H 0.06 0.79 8.00 -51.93 -0.42 0.37 16 LS Contribution 412.17 15.07 6.21 6.21 Total: -1.00 -33.09 412.17 -12.24 -45.34 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: -8.66 Total: 8.82 kcal Atomic # 6 Polarization: 7.07 SS G_CDS: -3.55 Total: 3.52 kcal Atomic # 7 Polarization: -62.67 SS G_CDS: -1.29 Total: -63.96 kcal Atomic # 8 Polarization: -13.25 SS G_CDS: 0.08 Total: -13.17 kcal Atomic # 14 Polarization: 18.28 SS G_CDS: -5.03 Total: 13.25 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -33.09 -12.24 -45.34 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871725263.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.444 kcal (2) G-P(sol) polarization free energy of solvation -33.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds