Wall clock time and date at job start Wed Apr 1 2020 04:52:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47114 * 2 1 4 4 N 1.46905 * 109.46925 * 179.97438 * 3 2 1 5 5 C 1.46904 * 110.99913 * 66.04695 * 4 3 2 6 6 C 1.46896 * 110.99991 * 189.99950 * 4 3 2 7 7 C 1.53001 * 109.47007 * 170.00068 * 6 4 3 8 8 H 1.08995 * 110.92096 * 57.45019 * 7 6 4 9 9 C 1.55163 * 111.00548 * 181.35037 * 7 6 4 10 10 C 1.54333 * 103.02093 * 153.37827 * 9 7 6 11 11 N 1.47014 * 107.26537 * 338.14175 * 10 9 7 12 12 C 1.34782 * 125.64762 * 178.84430 * 11 10 9 13 13 O 1.21577 * 120.00083 * 179.69058 * 12 11 10 14 14 N 1.34780 * 119.99837 * 359.69943 * 12 11 10 15 15 C 1.39457 * 120.00014 * 185.06613 * 14 12 11 16 16 C 1.38641 * 119.64729 * 185.34634 * 15 14 12 17 17 C 1.40824 * 118.67334 * 180.02562 * 16 15 14 18 18 C 1.41541 * 120.99882 * 180.02562 * 17 16 15 19 19 H 1.08006 * 119.99816 * 333.75900 * 18 17 16 20 20 C 1.40027 * 120.00004 * 153.75413 * 18 17 16 21 21 N 1.30742 * 120.00181 * 350.10780 * 20 18 17 22 22 Si 1.86800 * 119.99961 * 170.10464 * 20 18 17 23 23 H 1.48511 * 109.46977 * 60.00415 * 22 20 18 24 24 H 1.48497 * 109.47114 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47356 * 300.00448 * 22 20 18 26 26 C 1.41167 * 118.00542 * 0.02562 * 17 16 15 27 27 C 1.36590 * 119.12622 * 359.97438 * 26 17 16 28 28 N 1.32073 * 121.26156 * 0.02562 * 27 26 17 29 29 C 1.47426 * 108.70552 * 358.58602 * 11 10 9 30 30 H 1.08997 * 109.46935 * 300.00630 * 1 2 3 31 31 H 1.09010 * 109.47010 * 60.00094 * 1 2 3 32 32 H 1.08993 * 109.47367 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.46935 * 239.99370 * 2 1 3 34 34 H 1.09001 * 109.46743 * 119.99786 * 2 1 3 35 35 H 1.08997 * 109.47734 * 59.99860 * 3 2 1 36 36 H 1.09001 * 109.47141 * 299.99543 * 3 2 1 37 37 H 1.09000 * 109.46848 * 183.95784 * 5 4 3 38 38 H 1.09004 * 109.46888 * 303.95183 * 5 4 3 39 39 H 1.08991 * 109.46958 * 63.95290 * 5 4 3 40 40 H 1.08998 * 109.47231 * 50.00045 * 6 4 3 41 41 H 1.09002 * 109.47223 * 290.00158 * 6 4 3 42 42 H 1.08998 * 110.72128 * 271.94539 * 9 7 6 43 43 H 1.09008 * 110.71812 * 35.03366 * 9 7 6 44 44 H 1.09000 * 109.98889 * 218.66193 * 10 9 7 45 45 H 1.08999 * 109.77468 * 97.49891 * 10 9 7 46 46 H 0.96998 * 119.99478 * 5.06628 * 14 12 11 47 47 H 1.07999 * 120.66492 * 0.02569 * 16 15 14 48 48 H 0.96998 * 120.00102 * 179.97438 * 21 20 18 49 49 H 1.07998 * 120.43669 * 179.97438 * 26 17 16 50 50 H 1.07997 * 119.36771 * 179.97438 * 27 26 17 51 51 H 1.08997 * 110.36553 * 143.19685 * 29 11 10 52 52 H 1.08995 * 110.36137 * 265.51608 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5091 1.4424 0.0006 5 6 4.0360 0.8854 -1.2524 6 6 4.0354 2.7930 0.2388 7 6 5.5443 2.7170 0.4804 8 1 6.0504 2.2479 -0.3633 9 6 6.1328 4.1232 0.7698 10 6 7.3790 3.8095 1.6245 11 7 7.1779 2.4793 2.2174 12 6 8.0526 1.8342 3.0144 13 8 7.7774 0.7348 3.4545 14 7 9.2323 2.4079 3.3236 15 6 10.1808 1.6987 4.0601 16 6 11.3444 2.3316 4.4695 17 6 12.2885 1.5959 5.2116 18 6 13.4927 2.1931 5.6550 19 1 13.9111 3.0299 5.1153 20 6 14.1415 1.6991 6.7933 21 7 13.5451 0.8206 7.5561 22 14 15.8592 2.2952 7.2219 23 1 15.8349 3.7651 7.4324 24 1 16.3204 1.6244 8.4638 25 1 16.7880 1.9697 6.1098 26 6 11.9977 0.2450 5.5001 27 6 10.8239 -0.2924 5.0540 28 7 9.9607 0.4271 4.3600 29 6 5.8583 1.9707 1.8010 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8901 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.6767 1.9564 0.8899 36 1 1.6767 1.9563 -0.8900 37 1 5.1233 0.8320 -1.1974 38 1 3.6304 -0.1149 -1.4043 39 1 3.7453 1.5256 -2.0852 40 1 3.5486 3.2236 1.1138 41 1 3.8379 3.4187 -0.6316 42 1 6.4138 4.6221 -0.1577 43 1 5.4231 4.7298 1.3325 44 1 7.4873 4.5543 2.4128 45 1 8.2673 3.8033 0.9928 46 1 9.4216 3.3140 3.0339 47 1 11.5233 3.3680 4.2242 48 1 13.9947 0.4781 8.3444 49 1 12.6942 -0.3557 6.0662 50 1 10.5977 -1.3256 5.2721 51 1 5.9037 0.8955 1.6276 52 1 5.1070 2.2027 2.5557 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871725263.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:54 Heat of formation + Delta-G solvation = -5.816648 kcal Electronic energy + Delta-G solvation = -29791.343749 eV Core-core repulsion = 25789.963402 eV Total energy + Delta-G solvation = -4001.380347 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.59596 -40.26798 -39.26889 -37.93497 -36.23910 -35.36955 -34.46561 -32.63468 -32.55176 -30.31772 -30.11864 -28.13726 -27.92956 -27.16074 -25.02391 -23.67663 -23.30925 -23.04584 -21.61180 -21.06130 -20.79582 -19.74669 -19.02281 -17.81008 -17.33228 -16.82172 -16.65198 -16.59479 -16.37136 -16.02376 -15.90467 -15.63291 -15.34646 -14.99719 -14.80552 -14.52007 -14.38177 -14.17927 -13.99476 -13.79150 -13.69762 -13.29226 -13.16154 -12.97781 -12.85672 -12.83355 -12.82349 -12.60371 -12.38257 -12.15714 -12.07284 -11.90411 -11.85392 -11.67764 -11.50901 -11.46788 -11.32250 -11.24732 -11.18150 -9.96051 -9.66112 -9.61506 -9.20313 -8.84097 -8.58489 -6.58488 0.82973 0.99982 1.41622 1.52003 1.55264 1.59343 2.20597 2.26317 2.85324 2.88679 2.98334 3.65037 3.66890 3.75969 3.85380 4.04564 4.10766 4.17038 4.28352 4.37850 4.39272 4.46917 4.53690 4.58515 4.66204 4.70253 4.72537 4.75107 4.79048 4.82646 4.87152 4.91830 4.92520 4.95880 5.00977 5.04371 5.10017 5.13070 5.23899 5.25669 5.31887 5.32493 5.41831 5.44123 5.50323 5.64617 5.95549 5.96830 6.15982 6.19240 6.23675 6.53770 6.79389 6.83131 6.90716 7.57093 7.90135 8.29643 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.025877 B = 0.001779 C = 0.001698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.793486 B =15734.396895 C =16487.461418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.122 4.122 3 C 0.059 3.941 4 N -0.563 5.563 5 C 0.022 3.978 6 C 0.073 3.927 7 C -0.086 4.086 8 H 0.083 0.917 9 C -0.109 4.109 10 C 0.087 3.913 11 N -0.640 5.640 12 C 0.703 3.297 13 O -0.584 6.584 14 N -0.657 5.657 15 C 0.364 3.636 16 C -0.312 4.312 17 C 0.118 3.882 18 C -0.481 4.481 19 H 0.089 0.911 20 C 0.033 3.967 21 N -0.820 5.820 22 Si 0.994 3.006 23 H -0.256 1.256 24 H -0.269 1.269 25 H -0.258 1.258 26 C -0.241 4.241 27 C 0.097 3.903 28 N -0.581 5.581 29 C 0.144 3.856 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.054 0.946 35 H 0.075 0.925 36 H 0.041 0.959 37 H 0.062 0.938 38 H 0.068 0.932 39 H 0.035 0.965 40 H 0.083 0.917 41 H 0.058 0.942 42 H 0.109 0.891 43 H 0.093 0.907 44 H 0.077 0.923 45 H 0.074 0.926 46 H 0.420 0.580 47 H 0.124 0.876 48 H 0.291 0.709 49 H 0.122 0.878 50 H 0.136 0.864 51 H 0.048 0.952 52 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.523 9.163 -16.851 26.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.160 4.160 3 C -0.069 4.069 4 N -0.287 5.287 5 C -0.126 4.126 6 C -0.055 4.055 7 C -0.106 4.106 8 H 0.101 0.899 9 C -0.147 4.147 10 C -0.035 4.035 11 N -0.379 5.379 12 C 0.405 3.595 13 O -0.459 6.459 14 N -0.306 5.306 15 C 0.134 3.866 16 C -0.338 4.338 17 C 0.110 3.890 18 C -0.511 4.511 19 H 0.107 0.893 20 C -0.183 4.183 21 N -0.446 5.446 22 Si 0.814 3.186 23 H -0.180 1.180 24 H -0.194 1.194 25 H -0.182 1.182 26 C -0.265 4.265 27 C -0.054 4.054 28 N -0.301 5.301 29 C 0.021 3.979 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.093 0.907 36 H 0.059 0.941 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.054 0.946 40 H 0.101 0.899 41 H 0.076 0.924 42 H 0.127 0.873 43 H 0.112 0.888 44 H 0.096 0.904 45 H 0.092 0.908 46 H 0.258 0.742 47 H 0.142 0.858 48 H 0.102 0.898 49 H 0.140 0.860 50 H 0.153 0.847 51 H 0.066 0.934 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -19.355 7.479 -16.211 26.332 hybrid contribution 1.358 0.917 0.152 1.646 sum -17.997 8.396 -16.059 25.540 Atomic orbital electron populations 1.21707 0.94659 1.02059 1.02112 1.21532 0.96172 0.96358 1.01949 1.22147 0.86297 0.97320 1.01106 1.61942 1.08302 1.22785 1.35658 1.22441 1.00567 1.00110 0.89501 1.22031 0.92739 0.88995 1.01711 1.22327 0.96326 0.96160 0.95743 0.89882 1.22640 0.95320 0.95896 1.00848 1.22340 1.00690 0.82946 0.97562 1.47771 1.18601 1.20650 1.50907 1.15816 0.80226 0.83696 0.79777 1.90979 1.76779 1.21128 1.57039 1.42403 1.14332 1.17946 1.55966 1.18037 0.87350 0.89328 0.91912 1.21348 0.96139 1.00590 1.15725 1.18014 0.92130 0.91158 0.87697 1.19872 1.05832 1.15335 1.10084 0.89279 1.26938 1.03450 0.93306 0.94626 1.69818 1.38917 1.23883 1.12003 0.85065 0.75590 0.79515 0.78403 1.18034 1.19355 1.18200 1.22031 0.99732 0.96836 1.07875 1.21890 0.90570 0.98568 0.94342 1.67290 1.34385 1.06585 1.21841 1.21982 0.81607 0.98353 0.95958 0.92507 0.92166 0.92435 0.92069 0.92741 0.90669 0.94104 0.91925 0.91355 0.94630 0.89897 0.92410 0.87289 0.88805 0.90445 0.90815 0.74196 0.85790 0.89779 0.86041 0.84651 0.93370 0.92236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.91 71.98 0.71 -0.86 16 2 C -0.12 -1.66 5.86 30.59 0.18 -1.48 16 3 C 0.06 0.76 4.96 86.30 0.43 1.19 16 4 N -0.56 -8.75 4.58 -922.46 -4.23 -12.98 16 5 C 0.02 0.31 9.14 127.69 1.17 1.48 16 6 C 0.07 0.91 4.41 86.30 0.38 1.29 16 7 C -0.09 -1.33 2.90 -9.40 -0.03 -1.36 16 8 H 0.08 1.37 6.54 -2.39 -0.02 1.35 16 9 C -0.11 -1.21 6.42 31.79 0.20 -1.00 16 10 C 0.09 1.56 6.16 86.73 0.53 2.10 16 11 N -0.64 -18.82 3.33 -829.77 -2.76 -21.58 16 12 C 0.70 29.21 8.44 179.05 1.51 30.72 16 13 O -0.58 -30.68 14.89 -3.96 -0.06 -30.74 16 14 N -0.66 -26.38 5.35 -322.36 -1.72 -28.11 16 15 C 0.36 18.24 7.41 132.76 0.98 19.22 16 16 C -0.31 -15.56 9.74 23.00 0.22 -15.34 16 17 C 0.12 6.49 5.60 -21.11 -0.12 6.37 16 18 C -0.48 -25.12 9.13 23.52 0.21 -24.90 16 19 H 0.09 4.33 7.87 -2.91 -0.02 4.31 16 20 C 0.03 1.62 5.31 85.29 0.45 2.07 16 21 N -0.82 -42.33 10.70 21.84 0.23 -42.10 16 22 Si 0.99 36.58 29.57 68.60 2.03 38.61 16 23 H -0.26 -9.03 7.11 99.48 0.71 -8.33 16 24 H -0.27 -9.46 7.11 99.48 0.71 -8.75 16 25 H -0.26 -9.21 7.11 99.48 0.71 -8.51 16 26 C -0.24 -13.35 8.73 22.60 0.20 -13.15 16 27 C 0.10 5.23 11.10 84.27 0.94 6.16 16 28 N -0.58 -32.27 7.89 -194.27 -1.53 -33.80 16 29 C 0.14 3.69 6.20 86.85 0.54 4.23 16 30 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.06 0.54 8.14 -2.38 -0.02 0.52 16 32 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.06 0.83 6.47 -2.39 -0.02 0.81 16 34 H 0.05 0.93 8.14 -2.39 -0.02 0.92 16 35 H 0.07 0.95 7.93 -2.39 -0.02 0.93 16 36 H 0.04 0.45 8.12 -2.39 -0.02 0.43 16 37 H 0.06 0.99 6.45 -2.39 -0.02 0.98 16 38 H 0.07 0.98 6.30 -2.38 -0.02 0.97 16 39 H 0.04 0.41 8.14 -2.39 -0.02 0.39 16 40 H 0.08 0.98 7.89 -2.39 -0.02 0.96 16 41 H 0.06 0.54 8.12 -2.39 -0.02 0.52 16 42 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 43 H 0.09 0.80 8.04 -2.38 -0.02 0.78 16 44 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 45 H 0.07 1.22 8.14 -2.39 -0.02 1.21 16 46 H 0.42 12.98 7.69 -92.71 -0.71 12.26 16 47 H 0.12 5.40 8.06 -2.91 -0.02 5.38 16 48 H 0.29 13.56 8.29 -92.71 -0.77 12.79 16 49 H 0.12 6.82 6.11 -2.91 -0.02 6.81 16 50 H 0.14 6.65 8.06 -2.91 -0.02 6.62 16 51 H 0.05 1.55 8.04 -2.39 -0.02 1.53 16 52 H 0.06 1.54 8.00 -2.39 -0.02 1.52 16 Total: -1.00 -75.15 412.17 0.68 -74.47 By element: Atomic # 1 Polarization: 39.27 SS G_CDS: 0.20 Total: 39.47 kcal Atomic # 6 Polarization: 8.23 SS G_CDS: 8.52 Total: 16.75 kcal Atomic # 7 Polarization: -128.55 SS G_CDS: -10.01 Total: -138.56 kcal Atomic # 8 Polarization: -30.68 SS G_CDS: -0.06 Total: -30.74 kcal Atomic # 14 Polarization: 36.58 SS G_CDS: 2.03 Total: 38.61 kcal Total: -75.15 0.68 -74.47 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871725263.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.652 kcal (2) G-P(sol) polarization free energy of solvation -75.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds