Wall clock time and date at job start Wed Apr 1 2020 04:53:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.47303 * 2 1 4 4 N 1.46504 * 109.47380 * 179.97438 * 3 2 1 5 5 C 1.46506 * 119.99890 * 270.00621 * 4 3 2 6 6 C 1.53003 * 109.46774 * 269.99317 * 5 4 3 7 7 N 1.46898 * 109.46963 * 180.02562 * 6 5 4 8 8 C 1.48531 * 110.99854 * 52.60607 * 7 6 5 9 9 C 1.54939 * 103.22714 * 159.72203 * 8 7 6 10 10 C 1.54605 * 102.91890 * 322.58436 * 9 8 7 11 11 C 1.47896 * 110.99793 * 170.00151 * 7 6 5 12 12 C 1.34777 * 120.00013 * 89.99790 * 4 3 2 13 13 O 1.21573 * 119.99799 * 180.02562 * 12 4 3 14 14 N 1.34773 * 119.99759 * 0.02562 * 12 4 3 15 15 C 1.39244 * 120.00016 * 185.69525 * 14 12 4 16 16 C 1.39684 * 119.57819 * 174.98763 * 15 14 12 17 17 C 1.38648 * 119.49570 * 179.97438 * 16 15 14 18 18 C 1.38356 * 118.66912 * 359.74755 * 17 16 15 19 19 C 1.40573 * 119.13319 * 0.47795 * 18 17 16 20 20 C 1.41331 * 119.78678 * 179.79467 * 19 18 17 21 21 H 1.08004 * 120.00232 * 6.68315 * 20 19 18 22 22 C 1.40030 * 119.99830 * 186.68851 * 20 19 18 23 23 N 1.30738 * 120.00107 * 6.59886 * 22 20 19 24 24 Si 1.86796 * 119.99986 * 186.59712 * 22 20 19 25 25 H 1.48498 * 109.47356 * 265.00541 * 24 22 20 26 26 H 1.48500 * 109.47253 * 25.00472 * 24 22 20 27 27 H 1.48498 * 109.47178 * 145.00021 * 24 22 20 28 28 N 1.31912 * 119.57405 * 354.96869 * 15 14 12 29 29 H 1.09003 * 109.46429 * 59.99740 * 1 2 3 30 30 H 1.08997 * 109.47040 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46979 * 300.00401 * 1 2 3 32 32 H 1.09003 * 109.47120 * 240.00340 * 2 1 3 33 33 H 1.08997 * 109.46793 * 120.00503 * 2 1 3 34 34 H 1.09007 * 109.47177 * 59.99914 * 3 2 1 35 35 H 1.08997 * 109.47607 * 300.00005 * 3 2 1 36 36 H 1.09000 * 109.47473 * 29.99345 * 5 4 3 37 37 H 1.09004 * 109.46943 * 149.99940 * 5 4 3 38 38 H 1.09000 * 109.47144 * 300.00230 * 6 5 4 39 39 H 1.08998 * 109.46876 * 60.00101 * 6 5 4 40 40 H 1.08999 * 110.66912 * 278.15217 * 8 7 6 41 41 H 1.09001 * 110.66928 * 41.28386 * 8 7 6 42 42 H 1.09000 * 110.72549 * 204.23292 * 9 8 7 43 43 H 1.08997 * 110.72499 * 80.94242 * 9 8 7 44 44 H 1.09000 * 110.30545 * 263.04078 * 10 9 8 45 45 H 1.08998 * 110.30601 * 140.87672 * 10 9 8 46 46 H 1.09001 * 109.92110 * 333.50953 * 11 7 6 47 47 H 1.09004 * 109.91989 * 94.60671 * 11 7 6 48 48 H 0.96999 * 120.00412 * 5.69632 * 14 12 4 49 49 H 1.07993 * 120.25211 * 359.97438 * 16 15 14 50 50 H 1.08003 * 120.66479 * 180.02562 * 17 16 15 51 51 H 1.08001 * 120.43442 * 180.26588 * 18 17 16 52 52 H 0.96997 * 120.00781 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.2371 1.4425 1.2697 6 6 4.4920 2.8851 1.7113 7 7 5.2264 2.8852 2.9835 8 6 6.4467 2.0431 2.8937 9 6 7.3244 2.5654 4.0587 10 6 7.0513 4.0871 4.0420 11 6 5.6989 4.2450 3.3225 12 6 4.1795 1.4422 -1.1663 13 8 5.3952 1.4418 -1.1657 14 7 3.5061 1.4425 -2.3337 15 6 4.1975 1.3226 -3.5364 16 6 3.4856 1.2181 -4.7336 17 6 4.1758 1.0994 -5.9302 18 6 5.5591 1.0934 -5.9007 19 6 6.2177 1.1972 -4.6632 20 6 7.6302 1.1881 -4.6167 21 1 8.2009 1.2106 -5.5334 22 6 8.2899 1.1498 -3.3821 23 7 7.6050 0.9925 -2.2797 24 14 10.1484 1.3235 -3.3104 25 1 10.7709 -0.0245 -3.2843 26 1 10.6228 2.0647 -4.5065 27 1 10.5289 2.0683 -2.0834 28 7 5.5166 1.3096 -3.5305 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6768 1.9563 -0.8899 36 1 3.6477 0.9288 2.0292 37 1 5.1896 0.9286 1.1398 38 1 5.0814 3.3988 0.9518 39 1 3.5395 3.3989 1.8411 40 1 6.2000 0.9915 3.0394 41 1 6.9479 2.1928 1.9373 42 1 8.3782 2.3607 3.8697 43 1 7.0090 2.1273 5.0057 44 1 7.8357 4.6062 3.4913 45 1 6.9853 4.4708 5.0601 46 1 5.8287 4.8307 2.4125 47 1 4.9803 4.7348 3.9797 48 1 2.5397 1.5263 -2.3362 49 1 2.4057 1.2297 -4.7272 50 1 3.6444 1.0178 -6.8669 51 1 6.1254 1.0066 -6.8163 52 1 8.0618 0.9663 -1.4244 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881146237.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:37 Heat of formation + Delta-G solvation = 36.489406 kcal Electronic energy + Delta-G solvation = -31743.664401 eV Core-core repulsion = 27744.118583 eV Total energy + Delta-G solvation = -3999.545819 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -39.91612 -38.83507 -37.83457 -35.77052 -34.35387 -33.44340 -32.83643 -31.84803 -30.27072 -29.24463 -28.86346 -27.58713 -25.88241 -25.36642 -23.33820 -22.01096 -21.50162 -21.20785 -20.82950 -20.44681 -18.82705 -18.03787 -16.97514 -16.48679 -16.05348 -15.95992 -15.10550 -14.69989 -14.62007 -14.47319 -14.41870 -14.21599 -13.81065 -13.66788 -13.44750 -13.21021 -12.93512 -12.81091 -12.57615 -12.22205 -12.08612 -11.95543 -11.78417 -11.68998 -11.50016 -11.42797 -11.25016 -11.15646 -11.11064 -10.92314 -10.75994 -10.68626 -10.62942 -10.57860 -10.44412 -9.93894 -9.61721 -9.07692 -8.97741 -8.41485 -8.17463 -7.93221 -7.18190 -6.90980 -6.14910 -4.34827 2.86080 3.08496 3.15068 3.18157 3.21023 3.29151 4.04268 4.08579 4.20883 4.43531 4.63199 4.67220 4.87810 4.92725 4.94553 4.99929 5.16468 5.26214 5.31757 5.34737 5.37062 5.50973 5.57624 5.65867 5.68143 5.73178 5.75497 5.83323 5.90137 5.94660 5.97860 6.04702 6.06226 6.09601 6.13746 6.14693 6.20586 6.27879 6.49420 6.58841 6.82632 6.85516 6.88060 6.90778 7.13717 7.24177 7.38433 7.64513 7.75048 7.84384 8.19115 8.30999 8.64705 8.82345 9.08673 9.58795 10.29171 10.50904 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.007290 B = 0.004616 C = 0.002995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3839.847728 B = 6065.057675 C = 9347.250820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.145 4.145 3 C 0.114 3.886 4 N -0.639 5.639 5 C 0.142 3.858 6 C 0.032 3.968 7 N -0.516 5.516 8 C 0.030 3.970 9 C -0.124 4.124 10 C -0.131 4.131 11 C 0.036 3.964 12 C 0.669 3.331 13 O -0.462 6.462 14 N -0.672 5.672 15 C 0.387 3.613 16 C -0.358 4.358 17 C -0.035 4.035 18 C -0.308 4.308 19 C 0.274 3.726 20 C -0.428 4.428 21 H 0.082 0.918 22 C 0.061 3.939 23 N -0.653 5.653 24 Si 0.893 3.107 25 H -0.272 1.272 26 H -0.263 1.263 27 H -0.278 1.278 28 N -0.473 5.473 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.067 0.933 36 H 0.074 0.926 37 H 0.085 0.915 38 H 0.044 0.956 39 H 0.070 0.930 40 H 0.082 0.918 41 H 0.056 0.944 42 H 0.070 0.930 43 H 0.071 0.929 44 H 0.065 0.935 45 H 0.069 0.931 46 H 0.044 0.956 47 H 0.075 0.925 48 H 0.394 0.606 49 H 0.089 0.911 50 H 0.095 0.905 51 H 0.096 0.904 52 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.580 2.255 12.909 15.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.184 4.184 3 C -0.011 4.011 4 N -0.380 5.380 5 C 0.018 3.982 6 C -0.098 4.098 7 N -0.241 5.241 8 C -0.098 4.098 9 C -0.162 4.162 10 C -0.169 4.169 11 C -0.092 4.092 12 C 0.369 3.631 13 O -0.326 6.326 14 N -0.322 5.322 15 C 0.147 3.853 16 C -0.384 4.384 17 C -0.059 4.059 18 C -0.331 4.331 19 C 0.149 3.851 20 C -0.459 4.459 21 H 0.100 0.900 22 C -0.169 4.169 23 N -0.271 5.271 24 Si 0.717 3.283 25 H -0.198 1.198 26 H -0.187 1.187 27 H -0.204 1.204 28 N -0.192 5.192 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.092 0.908 37 H 0.104 0.896 38 H 0.063 0.937 39 H 0.088 0.912 40 H 0.101 0.899 41 H 0.074 0.926 42 H 0.089 0.911 43 H 0.090 0.910 44 H 0.084 0.916 45 H 0.087 0.913 46 H 0.062 0.938 47 H 0.094 0.906 48 H 0.229 0.771 49 H 0.108 0.892 50 H 0.113 0.887 51 H 0.114 0.886 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.466 2.092 14.358 16.318 hybrid contribution 0.091 0.427 -1.446 1.510 sum -7.375 2.519 12.912 15.082 Atomic orbital electron populations 1.21708 0.95442 1.01807 1.01731 1.21998 0.95707 0.97682 1.03022 1.21469 0.80987 0.96371 1.02227 1.47346 1.05169 1.80452 1.05041 1.21122 0.98052 0.95332 0.83724 1.22701 0.98647 0.98662 0.89783 1.64804 1.20734 1.08260 1.30262 1.23293 0.90126 0.98303 0.98070 1.22478 0.99592 0.95087 0.99011 1.22386 0.96776 0.97005 1.00719 1.22844 0.96030 0.90962 0.99382 1.16361 0.86426 0.80294 0.80038 1.91342 1.08569 1.49033 1.83672 1.42728 1.09212 1.76268 1.03991 1.18336 0.90869 0.93505 0.82586 1.20426 0.97397 1.28113 0.92453 1.20543 0.94094 0.95776 0.95536 1.21622 0.93852 1.19141 0.98459 1.18362 0.93443 0.87619 0.85629 1.19545 0.90103 1.42903 0.93330 0.90031 1.26123 0.99529 0.95277 0.95934 1.70253 1.35278 1.23708 0.97858 0.86552 0.84022 0.78926 0.78761 1.19779 1.18703 1.20351 1.68619 1.01930 1.20339 1.28290 0.92591 0.92638 0.92757 0.91457 0.91674 0.90751 0.91425 0.90799 0.89622 0.93732 0.91180 0.89935 0.92580 0.91140 0.90986 0.91589 0.91260 0.93763 0.90648 0.77078 0.89247 0.88661 0.88626 0.91716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.91 37.16 0.37 -0.89 16 2 C -0.15 -1.57 6.26 -26.73 -0.17 -1.73 16 3 C 0.11 1.30 5.22 -4.04 -0.02 1.28 16 4 N -0.64 -9.89 2.47 -179.42 -0.44 -10.33 16 5 C 0.14 2.04 5.07 -4.04 -0.02 2.02 16 6 C 0.03 0.44 5.35 -3.82 -0.02 0.42 16 7 N -0.52 -6.60 5.40 -230.46 -1.24 -7.85 16 8 C 0.03 0.38 5.10 -1.90 -0.01 0.37 16 9 C -0.12 -1.31 7.06 -24.86 -0.18 -1.49 16 10 C -0.13 -1.34 6.93 -25.37 -0.18 -1.51 16 11 C 0.04 0.42 6.69 -2.76 -0.02 0.40 16 12 C 0.67 13.93 8.24 -86.92 -0.72 13.22 16 13 O -0.46 -11.77 11.84 5.30 0.06 -11.71 16 14 N -0.67 -13.68 5.26 -15.79 -0.08 -13.77 16 15 C 0.39 9.60 7.43 -154.99 -1.15 8.45 16 16 C -0.36 -8.16 9.95 -38.89 -0.39 -8.55 16 17 C -0.04 -0.81 10.15 -39.39 -0.40 -1.21 16 18 C -0.31 -7.86 9.83 -38.66 -0.38 -8.24 16 19 C 0.27 7.81 6.52 -85.00 -0.55 7.26 16 20 C -0.43 -11.94 9.13 -37.73 -0.34 -12.28 16 21 H 0.08 2.13 7.86 -52.48 -0.41 1.72 16 22 C 0.06 1.62 5.47 -17.35 -0.09 1.52 16 23 N -0.65 -18.20 9.23 55.55 0.51 -17.69 16 24 Si 0.89 19.50 29.56 -169.99 -5.03 14.47 16 25 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 26 H -0.26 -5.65 7.11 56.52 0.40 -5.25 16 27 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 28 N -0.47 -13.45 5.78 -10.26 -0.06 -13.51 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.72 8.07 -51.92 -0.42 0.30 16 35 H 0.07 0.74 6.29 -51.93 -0.33 0.42 16 36 H 0.07 0.91 8.07 -51.93 -0.42 0.49 16 37 H 0.09 1.45 6.07 -51.93 -0.32 1.14 16 38 H 0.04 0.77 7.81 -51.93 -0.41 0.36 16 39 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 40 H 0.08 1.02 7.66 -51.93 -0.40 0.62 16 41 H 0.06 0.87 8.00 -51.93 -0.42 0.45 16 42 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 45 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.04 0.56 7.57 -51.93 -0.39 0.16 16 47 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 48 H 0.39 6.44 6.39 -40.82 -0.26 6.18 16 49 H 0.09 1.75 8.06 -52.49 -0.42 1.32 16 50 H 0.10 1.86 8.06 -52.48 -0.42 1.44 16 51 H 0.10 2.27 8.06 -52.49 -0.42 1.85 16 52 H 0.27 7.11 8.29 -40.82 -0.34 6.77 16 LS Contribution 411.00 15.07 6.19 6.19 Total: -1.00 -32.45 411.00 -13.17 -45.62 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: -8.82 Total: 9.54 kcal Atomic # 6 Polarization: 3.30 SS G_CDS: -4.27 Total: -0.97 kcal Atomic # 7 Polarization: -61.82 SS G_CDS: -1.32 Total: -63.14 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: 0.06 Total: -11.71 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -5.03 Total: 14.47 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -32.45 -13.17 -45.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881146237.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.110 kcal (2) G-P(sol) polarization free energy of solvation -32.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds