Wall clock time and date at job start Wed Apr 1 2020 04:53:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.47303 * 2 1 4 4 N 1.46504 * 109.47380 * 179.97438 * 3 2 1 5 5 C 1.46506 * 119.99890 * 270.00621 * 4 3 2 6 6 C 1.53003 * 109.46774 * 269.99317 * 5 4 3 7 7 N 1.46898 * 109.46963 * 180.02562 * 6 5 4 8 8 C 1.48531 * 110.99854 * 52.60607 * 7 6 5 9 9 C 1.54939 * 103.22714 * 159.72203 * 8 7 6 10 10 C 1.54605 * 102.91890 * 322.58436 * 9 8 7 11 11 C 1.47896 * 110.99793 * 170.00151 * 7 6 5 12 12 C 1.34777 * 120.00013 * 89.99790 * 4 3 2 13 13 O 1.21573 * 119.99799 * 180.02562 * 12 4 3 14 14 N 1.34773 * 119.99759 * 0.02562 * 12 4 3 15 15 C 1.39244 * 120.00016 * 185.69525 * 14 12 4 16 16 C 1.39684 * 119.57819 * 174.98763 * 15 14 12 17 17 C 1.38648 * 119.49570 * 179.97438 * 16 15 14 18 18 C 1.38356 * 118.66912 * 359.74755 * 17 16 15 19 19 C 1.40573 * 119.13319 * 0.47795 * 18 17 16 20 20 C 1.41331 * 119.78678 * 179.79467 * 19 18 17 21 21 H 1.08004 * 120.00232 * 6.68315 * 20 19 18 22 22 C 1.40030 * 119.99830 * 186.68851 * 20 19 18 23 23 N 1.30738 * 120.00107 * 6.59886 * 22 20 19 24 24 Si 1.86796 * 119.99986 * 186.59712 * 22 20 19 25 25 H 1.48498 * 109.47356 * 265.00541 * 24 22 20 26 26 H 1.48500 * 109.47253 * 25.00472 * 24 22 20 27 27 H 1.48498 * 109.47178 * 145.00021 * 24 22 20 28 28 N 1.31912 * 119.57405 * 354.96869 * 15 14 12 29 29 H 1.09003 * 109.46429 * 59.99740 * 1 2 3 30 30 H 1.08997 * 109.47040 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46979 * 300.00401 * 1 2 3 32 32 H 1.09003 * 109.47120 * 240.00340 * 2 1 3 33 33 H 1.08997 * 109.46793 * 120.00503 * 2 1 3 34 34 H 1.09007 * 109.47177 * 59.99914 * 3 2 1 35 35 H 1.08997 * 109.47607 * 300.00005 * 3 2 1 36 36 H 1.09000 * 109.47473 * 29.99345 * 5 4 3 37 37 H 1.09004 * 109.46943 * 149.99940 * 5 4 3 38 38 H 1.09000 * 109.47144 * 300.00230 * 6 5 4 39 39 H 1.08998 * 109.46876 * 60.00101 * 6 5 4 40 40 H 1.08999 * 110.66912 * 278.15217 * 8 7 6 41 41 H 1.09001 * 110.66928 * 41.28386 * 8 7 6 42 42 H 1.09000 * 110.72549 * 204.23292 * 9 8 7 43 43 H 1.08997 * 110.72499 * 80.94242 * 9 8 7 44 44 H 1.09000 * 110.30545 * 263.04078 * 10 9 8 45 45 H 1.08998 * 110.30601 * 140.87672 * 10 9 8 46 46 H 1.09001 * 109.92110 * 333.50953 * 11 7 6 47 47 H 1.09004 * 109.91989 * 94.60671 * 11 7 6 48 48 H 0.96999 * 120.00412 * 5.69632 * 14 12 4 49 49 H 1.07993 * 120.25211 * 359.97438 * 16 15 14 50 50 H 1.08003 * 120.66479 * 180.02562 * 17 16 15 51 51 H 1.08001 * 120.43442 * 180.26588 * 18 17 16 52 52 H 0.96997 * 120.00781 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.2371 1.4425 1.2697 6 6 4.4920 2.8851 1.7113 7 7 5.2264 2.8852 2.9835 8 6 6.4467 2.0431 2.8937 9 6 7.3244 2.5654 4.0587 10 6 7.0513 4.0871 4.0420 11 6 5.6989 4.2450 3.3225 12 6 4.1795 1.4422 -1.1663 13 8 5.3952 1.4418 -1.1657 14 7 3.5061 1.4425 -2.3337 15 6 4.1975 1.3226 -3.5364 16 6 3.4856 1.2181 -4.7336 17 6 4.1758 1.0994 -5.9302 18 6 5.5591 1.0934 -5.9007 19 6 6.2177 1.1972 -4.6632 20 6 7.6302 1.1881 -4.6167 21 1 8.2009 1.2106 -5.5334 22 6 8.2899 1.1498 -3.3821 23 7 7.6050 0.9925 -2.2797 24 14 10.1484 1.3235 -3.3104 25 1 10.7709 -0.0245 -3.2843 26 1 10.6228 2.0647 -4.5065 27 1 10.5289 2.0683 -2.0834 28 7 5.5166 1.3096 -3.5305 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6768 1.9563 -0.8899 36 1 3.6477 0.9288 2.0292 37 1 5.1896 0.9286 1.1398 38 1 5.0814 3.3988 0.9518 39 1 3.5395 3.3989 1.8411 40 1 6.2000 0.9915 3.0394 41 1 6.9479 2.1928 1.9373 42 1 8.3782 2.3607 3.8697 43 1 7.0090 2.1273 5.0057 44 1 7.8357 4.6062 3.4913 45 1 6.9853 4.4708 5.0601 46 1 5.8287 4.8307 2.4125 47 1 4.9803 4.7348 3.9797 48 1 2.5397 1.5263 -2.3362 49 1 2.4057 1.2297 -4.7272 50 1 3.6444 1.0178 -6.8669 51 1 6.1254 1.0066 -6.8163 52 1 8.0618 0.9663 -1.4244 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881146237.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:36 Heat of formation + Delta-G solvation = 17.578961 kcal Electronic energy + Delta-G solvation = -31744.484419 eV Core-core repulsion = 27744.118583 eV Total energy + Delta-G solvation = -4000.365837 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.44226 -40.06162 -39.48248 -37.12414 -36.04687 -35.01819 -34.27315 -32.92844 -32.20889 -30.94360 -29.96490 -28.75272 -27.46717 -26.76400 -24.65929 -23.52431 -23.02934 -22.54261 -21.76688 -21.68868 -20.42233 -19.68251 -18.59475 -18.05034 -17.30044 -17.04841 -16.56997 -16.29719 -16.09680 -16.00878 -15.71330 -15.52183 -15.26672 -14.96799 -14.68171 -14.64275 -14.53859 -14.00091 -13.78853 -13.72527 -13.55366 -13.03023 -12.93341 -12.88424 -12.72717 -12.70573 -12.56652 -12.52968 -12.32798 -12.31426 -12.14035 -12.08035 -11.83411 -11.79964 -11.62126 -11.46255 -11.45518 -10.87348 -10.79065 -9.91143 -9.53979 -9.51298 -9.10661 -8.78066 -8.09321 -6.40140 0.95849 1.27424 1.36303 1.48217 1.51530 1.69183 2.24530 2.51899 2.88300 3.01625 3.18172 3.67820 3.73395 3.94572 3.98451 4.05585 4.06802 4.09524 4.26759 4.32097 4.33349 4.42816 4.49465 4.55575 4.59418 4.65084 4.66789 4.73347 4.77312 4.84793 4.89375 4.93432 4.94979 4.96463 5.00929 5.03116 5.05856 5.14350 5.22525 5.24781 5.26559 5.27634 5.45996 5.62309 5.70262 5.83149 5.84436 5.91708 5.97055 6.02886 6.25072 6.40424 6.81743 7.04714 7.13728 7.96900 8.36787 8.56024 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.007290 B = 0.004616 C = 0.002995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3839.847728 B = 6065.057675 C = 9347.250820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.139 4.139 3 C 0.109 3.891 4 N -0.628 5.628 5 C 0.147 3.853 6 C 0.045 3.955 7 N -0.509 5.509 8 C 0.028 3.972 9 C -0.118 4.118 10 C -0.128 4.128 11 C 0.031 3.969 12 C 0.661 3.339 13 O -0.515 6.515 14 N -0.661 5.661 15 C 0.365 3.635 16 C -0.346 4.346 17 C -0.032 4.032 18 C -0.331 4.331 19 C 0.241 3.759 20 C -0.469 4.469 21 H 0.085 0.915 22 C 0.014 3.986 23 N -0.687 5.687 24 Si 0.970 3.030 25 H -0.262 1.262 26 H -0.256 1.256 27 H -0.277 1.277 28 N -0.508 5.508 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.040 0.960 33 H 0.063 0.937 34 H 0.105 0.895 35 H 0.075 0.925 36 H 0.105 0.895 37 H 0.052 0.948 38 H 0.001 0.999 39 H 0.090 0.910 40 H 0.085 0.915 41 H 0.017 0.983 42 H 0.073 0.927 43 H 0.089 0.911 44 H 0.061 0.939 45 H 0.094 0.906 46 H 0.026 0.974 47 H 0.096 0.904 48 H 0.413 0.587 49 H 0.130 0.870 50 H 0.138 0.862 51 H 0.104 0.896 52 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.832 2.630 14.274 18.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.178 4.178 3 C -0.013 4.013 4 N -0.368 5.368 5 C 0.023 3.977 6 C -0.085 4.085 7 N -0.233 5.233 8 C -0.100 4.100 9 C -0.156 4.156 10 C -0.166 4.166 11 C -0.096 4.096 12 C 0.361 3.639 13 O -0.383 6.383 14 N -0.313 5.313 15 C 0.125 3.875 16 C -0.372 4.372 17 C -0.056 4.056 18 C -0.354 4.354 19 C 0.115 3.885 20 C -0.500 4.500 21 H 0.103 0.897 22 C -0.211 4.211 23 N -0.306 5.306 24 Si 0.792 3.208 25 H -0.187 1.187 26 H -0.179 1.179 27 H -0.202 1.202 28 N -0.228 5.228 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.089 0.911 32 H 0.059 0.941 33 H 0.082 0.918 34 H 0.123 0.877 35 H 0.094 0.906 36 H 0.123 0.877 37 H 0.071 0.929 38 H 0.020 0.980 39 H 0.108 0.892 40 H 0.103 0.897 41 H 0.036 0.964 42 H 0.092 0.908 43 H 0.108 0.892 44 H 0.079 0.921 45 H 0.112 0.888 46 H 0.045 0.955 47 H 0.114 0.886 48 H 0.252 0.748 49 H 0.148 0.852 50 H 0.156 0.844 51 H 0.122 0.878 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.810 2.468 15.745 18.714 hybrid contribution 0.564 0.305 -1.880 1.987 sum -9.246 2.773 13.864 16.894 Atomic orbital electron populations 1.21668 0.93133 1.02409 1.02874 1.21918 0.97565 0.96582 1.01701 1.21795 0.77971 0.97454 1.04114 1.47286 1.06980 1.78985 1.03596 1.21139 0.97113 0.95661 0.83756 1.22544 0.98865 0.97852 0.89208 1.64881 1.20486 1.09071 1.28881 1.23271 0.90602 0.98798 0.97336 1.22487 0.99297 0.95369 0.98474 1.22407 0.95705 0.96662 1.01831 1.22966 0.97499 0.90021 0.99163 1.16662 0.86151 0.79894 0.81224 1.91331 1.11084 1.51198 1.84662 1.42573 1.09959 1.75817 1.02907 1.18841 0.90548 0.93335 0.84768 1.20898 0.99419 1.25309 0.91531 1.21022 0.93266 0.93879 0.97483 1.21810 0.95433 1.20340 0.97864 1.18847 0.94336 0.88349 0.86932 1.19860 0.90752 1.45264 0.94149 0.89698 1.26970 1.04532 0.94492 0.95145 1.70450 1.37060 1.25015 0.98074 0.85380 0.77550 0.79204 0.78711 1.18716 1.17929 1.20211 1.68583 1.03875 1.21382 1.28910 0.91989 0.92371 0.91068 0.94106 0.91783 0.87698 0.90648 0.87730 0.92913 0.98028 0.89204 0.89651 0.96438 0.90819 0.89250 0.92064 0.88788 0.95540 0.88600 0.74813 0.85190 0.84411 0.87774 0.92164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 9.91 71.98 0.71 -1.27 16 2 C -0.14 -2.72 6.26 30.59 0.19 -2.53 16 3 C 0.11 2.26 5.22 86.38 0.45 2.71 16 4 N -0.63 -19.47 2.47 -839.82 -2.08 -21.55 16 5 C 0.15 4.29 5.07 86.38 0.44 4.73 16 6 C 0.05 1.28 5.35 86.30 0.46 1.74 16 7 N -0.51 -12.88 5.40 -883.03 -4.76 -17.65 16 8 C 0.03 0.75 5.10 86.65 0.44 1.19 16 9 C -0.12 -2.43 7.06 31.80 0.22 -2.20 16 10 C -0.13 -2.47 6.93 31.48 0.22 -2.25 16 11 C 0.03 0.71 6.69 86.45 0.58 1.28 16 12 C 0.66 28.51 8.24 179.06 1.47 29.99 16 13 O -0.51 -28.03 11.84 -3.95 -0.05 -28.08 16 14 N -0.66 -27.07 5.26 -322.13 -1.69 -28.76 16 15 C 0.36 18.33 7.43 133.26 0.99 19.32 16 16 C -0.35 -15.19 9.95 22.72 0.23 -14.96 16 17 C -0.03 -1.44 10.15 22.40 0.23 -1.21 16 18 C -0.33 -17.18 9.83 22.87 0.22 -16.95 16 19 C 0.24 14.31 6.52 40.19 0.26 14.57 16 20 C -0.47 -27.51 9.13 23.47 0.21 -27.30 16 21 H 0.08 4.67 7.86 -2.91 -0.02 4.64 16 22 C 0.01 0.81 5.47 85.29 0.47 1.27 16 23 N -0.69 -40.86 9.23 21.84 0.20 -40.66 16 24 Si 0.97 42.05 29.56 68.60 2.03 44.07 16 25 H -0.26 -10.82 7.11 99.48 0.71 -10.12 16 26 H -0.26 -10.62 7.11 99.48 0.71 -9.92 16 27 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 28 N -0.51 -30.15 5.78 -186.37 -1.08 -31.23 16 29 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.10 1.62 8.07 -2.38 -0.02 1.60 16 35 H 0.08 1.47 6.29 -2.39 -0.02 1.45 16 36 H 0.10 2.41 8.07 -2.39 -0.02 2.39 16 37 H 0.05 1.92 6.07 -2.39 -0.01 1.90 16 38 H 0.00 0.05 7.81 -2.39 -0.02 0.03 16 39 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 40 H 0.09 2.19 7.66 -2.39 -0.02 2.17 16 41 H 0.02 0.60 8.00 -2.39 -0.02 0.58 16 42 H 0.07 1.46 8.14 -2.39 -0.02 1.45 16 43 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 44 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 45 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 46 H 0.03 0.68 7.57 -2.39 -0.02 0.67 16 47 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 48 H 0.41 12.98 6.39 -92.71 -0.59 12.38 16 49 H 0.13 4.58 8.06 -2.91 -0.02 4.56 16 50 H 0.14 4.88 8.06 -2.91 -0.02 4.86 16 51 H 0.10 5.03 8.06 -2.91 -0.02 5.01 16 52 H 0.27 15.12 8.29 -92.71 -0.77 14.35 16 Total: -1.00 -76.90 411.00 0.68 -76.22 By element: Atomic # 1 Polarization: 39.20 SS G_CDS: 0.31 Total: 39.51 kcal Atomic # 6 Polarization: 0.32 SS G_CDS: 7.81 Total: 8.12 kcal Atomic # 7 Polarization: -130.44 SS G_CDS: -9.41 Total: -139.85 kcal Atomic # 8 Polarization: -28.03 SS G_CDS: -0.05 Total: -28.08 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.07 kcal Total: -76.90 0.68 -76.22 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881146237.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.796 kcal (2) G-P(sol) polarization free energy of solvation -76.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.217 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds