Wall clock time and date at job start Wed Apr 1 2020 04:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47318 * 2 1 4 4 N 1.46901 * 109.47117 * 179.97438 * 3 2 1 5 5 C 1.46850 * 110.99757 * 169.99460 * 4 3 2 6 6 C 1.53042 * 109.51950 * 185.83700 * 5 4 3 7 7 C 1.53116 * 109.27865 * 300.82336 * 6 5 4 8 8 C 1.53005 * 109.51825 * 177.55992 * 7 6 5 9 9 N 1.46496 * 109.46807 * 175.12624 * 8 7 6 10 10 C 1.34777 * 120.00099 * 179.97438 * 9 8 7 11 11 O 1.21577 * 119.99827 * 0.02562 * 10 9 8 12 12 N 1.34776 * 120.00422 * 179.97438 * 10 9 8 13 13 C 1.39239 * 120.00405 * 185.80033 * 12 10 9 14 14 C 1.39693 * 119.57304 * 18.80792 * 13 12 10 15 15 C 1.38641 * 119.49495 * 180.02562 * 14 13 12 16 16 C 1.38361 * 118.67060 * 359.73341 * 15 14 13 17 17 C 1.40572 * 119.12979 * 0.53335 * 16 15 14 18 18 C 1.41328 * 119.78467 * 179.72881 * 17 16 15 19 19 H 1.08003 * 120.00133 * 6.98045 * 18 17 16 20 20 C 1.40024 * 120.00038 * 186.97700 * 18 17 16 21 21 N 1.30746 * 120.00260 * 181.93444 * 20 18 17 22 22 Si 1.86806 * 119.99911 * 1.93817 * 20 18 17 23 23 H 1.48496 * 109.47403 * 179.97438 * 22 20 18 24 24 H 1.48504 * 109.46951 * 299.99645 * 22 20 18 25 25 H 1.48492 * 109.47090 * 59.99491 * 22 20 18 26 26 N 1.31900 * 119.57825 * 198.83121 * 13 12 10 27 27 C 1.53114 * 109.21410 * 57.62538 * 7 6 5 28 28 C 1.46839 * 110.99911 * 294.20802 * 4 3 2 29 29 H 1.08998 * 109.47279 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47150 * 300.00450 * 1 2 3 31 31 H 1.08999 * 109.46447 * 60.00281 * 1 2 3 32 32 H 1.08993 * 109.47415 * 239.99197 * 2 1 3 33 33 H 1.09008 * 109.46428 * 119.99547 * 2 1 3 34 34 H 1.08999 * 109.47377 * 59.99690 * 3 2 1 35 35 H 1.08999 * 109.46876 * 299.99786 * 3 2 1 36 36 H 1.09002 * 109.46265 * 65.82655 * 5 4 3 37 37 H 1.08998 * 109.45369 * 305.85335 * 5 4 3 38 38 H 1.09003 * 109.49653 * 180.88239 * 6 5 4 39 39 H 1.09001 * 109.50078 * 60.77049 * 6 5 4 40 40 H 1.08995 * 109.52503 * 297.68457 * 7 6 5 41 41 H 1.08996 * 109.46984 * 55.12872 * 8 7 6 42 42 H 1.09002 * 109.47139 * 295.12583 * 8 7 6 43 43 H 0.97001 * 120.00437 * 359.97438 * 9 8 7 44 44 H 0.97001 * 119.99346 * 5.81122 * 12 10 9 45 45 H 1.08001 * 120.25043 * 0.02562 * 14 13 12 46 46 H 1.08001 * 120.66587 * 180.02562 * 15 14 13 47 47 H 1.08001 * 120.43474 * 180.26074 * 16 15 14 48 48 H 0.96992 * 119.99851 * 354.83157 * 21 20 18 49 49 H 1.09004 * 109.50463 * 62.31506 * 27 7 6 50 50 H 1.09002 * 109.50364 * 182.43305 * 27 7 6 51 51 H 1.09004 * 109.46410 * 294.17465 * 28 4 3 52 52 H 1.08996 * 109.46732 * 54.15257 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5091 1.4424 0.0006 5 6 4.0355 2.7925 -0.2376 6 6 5.5584 2.7307 -0.3750 7 6 6.1585 2.1475 0.9073 8 6 7.6759 2.0266 0.7527 9 7 8.2615 1.5787 2.0186 10 6 9.5937 1.4005 2.1192 11 8 10.3094 1.6119 1.1594 12 7 10.1326 0.9890 3.2839 13 6 11.5161 0.9208 3.4254 14 6 12.3351 1.6300 2.5435 15 6 13.7124 1.5605 2.6855 16 6 14.2363 0.7891 3.7078 17 6 13.3595 0.0945 4.5591 18 6 13.8798 -0.7021 5.6042 19 1 14.9383 -0.6877 5.8185 20 6 13.0230 -1.5099 6.3618 21 7 13.4984 -2.2178 7.3529 22 14 11.2007 -1.5761 5.9565 23 1 10.5172 -2.4981 6.8988 24 1 10.6160 -0.2168 6.0817 25 1 11.0203 -2.0665 4.5666 26 7 12.0365 0.1870 4.3900 27 6 5.5579 0.7619 1.1598 28 6 4.0348 0.8805 1.2512 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8898 33 1 1.8933 -0.5138 0.8901 34 1 1.6768 1.9564 0.8899 35 1 1.6768 1.9563 -0.8900 36 1 3.7724 3.4380 0.6005 37 1 3.6039 3.1938 -1.1545 38 1 5.9502 3.7350 -0.5361 39 1 5.8220 2.0965 -1.2214 40 1 5.9290 2.8026 1.7476 41 1 8.0921 2.9972 0.4831 42 1 7.9049 1.3030 -0.0297 43 1 7.6906 1.4104 2.7845 44 1 9.5565 0.7402 4.0236 45 1 11.8986 2.2279 1.7571 46 1 14.3634 2.1014 2.0146 47 1 15.3049 0.7181 3.8470 48 1 14.4541 -2.2424 7.5167 49 1 5.8214 0.0957 0.3383 50 1 5.9494 0.3604 2.0946 51 1 3.7717 1.5349 2.0823 52 1 3.6030 -0.1067 1.4156 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881153831.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:09:08 Heat of formation + Delta-G solvation = -13.925745 kcal Electronic energy + Delta-G solvation = -29896.328554 eV Core-core repulsion = 25894.596570 eV Total energy + Delta-G solvation = -4001.731984 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.41472 -39.62734 -38.30621 -36.37809 -34.56154 -34.25328 -33.45765 -32.19899 -31.22889 -31.07760 -29.47959 -27.70039 -25.41466 -25.08661 -23.78718 -22.83141 -21.86788 -21.60616 -21.17701 -20.42583 -19.93883 -18.63896 -17.84301 -17.06465 -16.39659 -15.95637 -15.61979 -15.40874 -15.06591 -14.96686 -14.73616 -14.60512 -14.42635 -14.08004 -13.91174 -13.58397 -13.29091 -13.14924 -13.08449 -12.81931 -12.71223 -12.52854 -12.20519 -12.14618 -11.94362 -11.82633 -11.55599 -11.49975 -11.19339 -11.17099 -10.97605 -10.79481 -10.76810 -10.50985 -10.35298 -9.98445 -9.65665 -9.41119 -9.14133 -9.01783 -8.70876 -8.51733 -7.78228 -7.32948 -7.22326 -4.75005 2.41763 2.67923 2.74555 3.44785 3.46144 3.54130 3.67644 3.97306 4.26671 4.32960 4.36578 4.39663 4.42984 4.59580 4.64242 4.67971 4.85581 4.89356 4.96731 4.99860 5.08343 5.19184 5.21473 5.28546 5.31588 5.38027 5.47138 5.51840 5.55909 5.58252 5.63560 5.71661 5.75749 5.80190 5.82872 5.86324 5.88204 6.08050 6.11818 6.36721 6.45416 6.56597 6.69418 6.71569 6.71583 6.92615 7.19472 7.35489 7.47097 7.64718 7.78286 7.94248 8.22298 8.35376 8.66220 8.78221 9.43612 10.02313 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016099 B = 0.002082 C = 0.001866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.874914 B =13442.817009 C =14999.701664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C 0.055 3.945 4 N -0.539 5.539 5 C 0.058 3.942 6 C -0.108 4.108 7 C -0.100 4.100 8 C 0.146 3.854 9 N -0.746 5.746 10 C 0.709 3.291 11 O -0.564 6.564 12 N -0.668 5.668 13 C 0.405 3.595 14 C -0.310 4.310 15 C -0.034 4.034 16 C -0.280 4.280 17 C 0.275 3.725 18 C -0.478 4.478 19 H 0.083 0.917 20 C 0.043 3.957 21 N -0.808 5.808 22 Si 1.159 2.841 23 H -0.334 1.334 24 H -0.286 1.286 25 H -0.294 1.294 26 N -0.601 5.601 27 C -0.114 4.114 28 C 0.053 3.947 29 H 0.056 0.944 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.071 0.929 33 H 0.062 0.938 34 H 0.031 0.969 35 H 0.073 0.927 36 H 0.032 0.968 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.067 0.933 42 H 0.069 0.931 43 H 0.395 0.605 44 H 0.403 0.597 45 H 0.142 0.858 46 H 0.106 0.894 47 H 0.105 0.895 48 H 0.283 0.717 49 H 0.076 0.924 50 H 0.069 0.931 51 H 0.032 0.968 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.398 7.893 -12.428 28.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C -0.072 4.072 4 N -0.264 5.264 5 C -0.070 4.070 6 C -0.146 4.146 7 C -0.119 4.119 8 C 0.022 3.978 9 N -0.402 5.402 10 C 0.409 3.591 11 O -0.440 6.440 12 N -0.315 5.315 13 C 0.174 3.826 14 C -0.335 4.335 15 C -0.058 4.058 16 C -0.302 4.302 17 C 0.151 3.849 18 C -0.510 4.510 19 H 0.101 0.899 20 C -0.178 4.178 21 N -0.430 5.430 22 Si 0.995 3.005 23 H -0.268 1.268 24 H -0.214 1.214 25 H -0.222 1.222 26 N -0.327 5.327 27 C -0.151 4.151 28 C -0.075 4.075 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.049 0.951 35 H 0.091 0.909 36 H 0.050 0.950 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.095 0.905 40 H 0.093 0.907 41 H 0.085 0.915 42 H 0.087 0.913 43 H 0.229 0.771 44 H 0.238 0.762 45 H 0.159 0.841 46 H 0.124 0.876 47 H 0.123 0.877 48 H 0.094 0.906 49 H 0.094 0.906 50 H 0.087 0.913 51 H 0.050 0.950 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -25.416 6.726 -12.615 29.161 hybrid contribution 1.468 1.375 0.484 2.069 sum -23.948 8.102 -12.131 28.042 Atomic orbital electron populations 1.21741 0.95643 1.01869 1.01701 1.21558 0.95347 0.96339 1.02818 1.22138 0.87084 0.97345 1.00668 1.61933 1.07195 1.22050 1.35231 1.22063 0.95444 0.88923 1.00595 1.21548 0.94043 1.01439 0.97614 1.21461 0.93831 0.97602 0.99049 1.21216 0.91153 1.00307 0.85143 1.45130 1.05697 1.74000 1.15408 1.15716 0.82072 0.78439 0.82917 1.90853 1.59026 1.56914 1.37194 1.42351 1.06260 1.68201 1.14737 1.17794 0.81378 0.91559 0.91915 1.21552 0.93173 1.11599 1.07187 1.20929 0.94381 0.95208 0.95295 1.21585 0.99057 1.08208 1.01393 1.18252 0.85226 0.90043 0.91356 1.20708 0.97085 1.20625 1.12578 0.89873 1.27768 1.10071 0.89931 0.90050 1.70642 1.17660 1.31932 1.22790 0.81760 0.70483 0.74663 0.73581 1.26774 1.21384 1.22227 1.65863 1.14738 1.26817 1.25258 1.21680 0.93990 0.96781 1.02686 1.22148 0.95540 0.99966 0.89798 0.92464 0.92913 0.92696 0.91062 0.91899 0.95054 0.90865 0.94953 0.90643 0.90997 0.90477 0.90748 0.91460 0.91296 0.77094 0.76207 0.84112 0.87631 0.87711 0.90621 0.90552 0.91268 0.94990 0.90342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 9.91 37.16 0.37 -0.37 16 2 C -0.12 -0.72 5.86 -26.73 -0.16 -0.88 16 3 C 0.06 0.34 4.96 -3.82 -0.02 0.33 16 4 N -0.54 -3.89 4.66 -234.67 -1.09 -4.98 16 5 C 0.06 0.38 5.46 -3.83 -0.02 0.35 16 6 C -0.11 -0.72 5.38 -26.65 -0.14 -0.87 16 7 C -0.10 -0.74 2.29 -90.50 -0.21 -0.94 16 8 C 0.15 1.47 5.07 -4.04 -0.02 1.45 16 9 N -0.75 -8.84 5.31 -65.23 -0.35 -9.19 16 10 C 0.71 12.20 8.40 -86.92 -0.73 11.47 16 11 O -0.56 -11.61 13.14 5.30 0.07 -11.54 16 12 N -0.67 -12.64 5.42 -15.79 -0.09 -12.73 16 13 C 0.41 9.49 7.51 -155.00 -1.16 8.33 16 14 C -0.31 -7.17 8.83 -38.89 -0.34 -7.52 16 15 C -0.03 -0.76 10.15 -39.39 -0.40 -1.16 16 16 C -0.28 -6.80 9.83 -38.66 -0.38 -7.18 16 17 C 0.28 7.35 6.39 -85.00 -0.54 6.81 16 18 C -0.48 -13.19 9.58 -37.74 -0.36 -13.55 16 19 H 0.08 2.29 8.05 -52.48 -0.42 1.86 16 20 C 0.04 1.17 5.52 -17.34 -0.10 1.07 16 21 N -0.81 -22.18 13.65 55.55 0.76 -21.42 16 22 Si 1.16 28.27 25.53 -169.99 -4.34 23.93 16 23 H -0.33 -8.03 7.11 56.52 0.40 -7.63 16 24 H -0.29 -6.66 6.70 56.52 0.38 -6.28 16 25 H -0.29 -7.32 7.10 56.52 0.40 -6.92 16 26 N -0.60 -15.44 4.58 -10.26 -0.05 -15.49 16 27 C -0.11 -0.85 5.23 -26.65 -0.14 -0.99 16 28 C 0.05 0.38 5.29 -3.83 -0.02 0.36 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.39 6.43 -51.92 -0.33 0.05 16 34 H 0.03 0.20 8.12 -51.93 -0.42 -0.22 16 35 H 0.07 0.42 7.99 -51.93 -0.41 0.01 16 36 H 0.03 0.21 8.14 -51.93 -0.42 -0.21 16 37 H 0.08 0.44 8.02 -51.93 -0.42 0.03 16 38 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 43 H 0.40 3.63 7.70 -40.82 -0.31 3.31 16 44 H 0.40 6.62 8.84 -40.82 -0.36 6.26 16 45 H 0.14 3.21 5.33 -52.50 -0.28 2.93 16 46 H 0.11 2.01 8.06 -52.49 -0.42 1.59 16 47 H 0.10 2.37 8.06 -52.49 -0.42 1.95 16 48 H 0.28 7.43 8.72 -40.82 -0.36 7.07 16 49 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 50 H 0.07 0.50 7.26 -51.93 -0.38 0.12 16 51 H 0.03 0.23 8.14 -51.93 -0.42 -0.20 16 52 H 0.08 0.54 6.21 -51.93 -0.32 0.22 16 LS Contribution 405.36 15.07 6.11 6.11 Total: -1.00 -31.87 405.36 -12.11 -43.98 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -8.76 Total: 4.63 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: -4.38 Total: -3.30 kcal Atomic # 7 Polarization: -63.00 SS G_CDS: -0.81 Total: -63.81 kcal Atomic # 8 Polarization: -11.61 SS G_CDS: 0.07 Total: -11.54 kcal Atomic # 14 Polarization: 28.27 SS G_CDS: -4.34 Total: 23.93 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -31.87 -12.11 -43.98 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881153831.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.054 kcal (2) G-P(sol) polarization free energy of solvation -31.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds