Wall clock time and date at job start Wed Apr 1 2020 04:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47318 * 2 1 4 4 N 1.46901 * 109.47117 * 179.97438 * 3 2 1 5 5 C 1.46850 * 110.99757 * 169.99460 * 4 3 2 6 6 C 1.53042 * 109.51950 * 185.83700 * 5 4 3 7 7 C 1.53116 * 109.27865 * 300.82336 * 6 5 4 8 8 C 1.53005 * 109.51825 * 177.55992 * 7 6 5 9 9 N 1.46496 * 109.46807 * 175.12624 * 8 7 6 10 10 C 1.34777 * 120.00099 * 179.97438 * 9 8 7 11 11 O 1.21577 * 119.99827 * 0.02562 * 10 9 8 12 12 N 1.34776 * 120.00422 * 179.97438 * 10 9 8 13 13 C 1.39239 * 120.00405 * 185.80033 * 12 10 9 14 14 C 1.39693 * 119.57304 * 18.80792 * 13 12 10 15 15 C 1.38641 * 119.49495 * 180.02562 * 14 13 12 16 16 C 1.38361 * 118.67060 * 359.73341 * 15 14 13 17 17 C 1.40572 * 119.12979 * 0.53335 * 16 15 14 18 18 C 1.41328 * 119.78467 * 179.72881 * 17 16 15 19 19 H 1.08003 * 120.00133 * 6.98045 * 18 17 16 20 20 C 1.40024 * 120.00038 * 186.97700 * 18 17 16 21 21 N 1.30746 * 120.00260 * 181.93444 * 20 18 17 22 22 Si 1.86806 * 119.99911 * 1.93817 * 20 18 17 23 23 H 1.48496 * 109.47403 * 179.97438 * 22 20 18 24 24 H 1.48504 * 109.46951 * 299.99645 * 22 20 18 25 25 H 1.48492 * 109.47090 * 59.99491 * 22 20 18 26 26 N 1.31900 * 119.57825 * 198.83121 * 13 12 10 27 27 C 1.53114 * 109.21410 * 57.62538 * 7 6 5 28 28 C 1.46839 * 110.99911 * 294.20802 * 4 3 2 29 29 H 1.08998 * 109.47279 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47150 * 300.00450 * 1 2 3 31 31 H 1.08999 * 109.46447 * 60.00281 * 1 2 3 32 32 H 1.08993 * 109.47415 * 239.99197 * 2 1 3 33 33 H 1.09008 * 109.46428 * 119.99547 * 2 1 3 34 34 H 1.08999 * 109.47377 * 59.99690 * 3 2 1 35 35 H 1.08999 * 109.46876 * 299.99786 * 3 2 1 36 36 H 1.09002 * 109.46265 * 65.82655 * 5 4 3 37 37 H 1.08998 * 109.45369 * 305.85335 * 5 4 3 38 38 H 1.09003 * 109.49653 * 180.88239 * 6 5 4 39 39 H 1.09001 * 109.50078 * 60.77049 * 6 5 4 40 40 H 1.08995 * 109.52503 * 297.68457 * 7 6 5 41 41 H 1.08996 * 109.46984 * 55.12872 * 8 7 6 42 42 H 1.09002 * 109.47139 * 295.12583 * 8 7 6 43 43 H 0.97001 * 120.00437 * 359.97438 * 9 8 7 44 44 H 0.97001 * 119.99346 * 5.81122 * 12 10 9 45 45 H 1.08001 * 120.25043 * 0.02562 * 14 13 12 46 46 H 1.08001 * 120.66587 * 180.02562 * 15 14 13 47 47 H 1.08001 * 120.43474 * 180.26074 * 16 15 14 48 48 H 0.96992 * 119.99851 * 354.83157 * 21 20 18 49 49 H 1.09004 * 109.50463 * 62.31506 * 27 7 6 50 50 H 1.09002 * 109.50364 * 182.43305 * 27 7 6 51 51 H 1.09004 * 109.46410 * 294.17465 * 28 4 3 52 52 H 1.08996 * 109.46732 * 54.15257 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5091 1.4424 0.0006 5 6 4.0355 2.7925 -0.2376 6 6 5.5584 2.7307 -0.3750 7 6 6.1585 2.1475 0.9073 8 6 7.6759 2.0266 0.7527 9 7 8.2615 1.5787 2.0186 10 6 9.5937 1.4005 2.1192 11 8 10.3094 1.6119 1.1594 12 7 10.1326 0.9890 3.2839 13 6 11.5161 0.9208 3.4254 14 6 12.3351 1.6300 2.5435 15 6 13.7124 1.5605 2.6855 16 6 14.2363 0.7891 3.7078 17 6 13.3595 0.0945 4.5591 18 6 13.8798 -0.7021 5.6042 19 1 14.9383 -0.6877 5.8185 20 6 13.0230 -1.5099 6.3618 21 7 13.4984 -2.2178 7.3529 22 14 11.2007 -1.5761 5.9565 23 1 10.5172 -2.4981 6.8988 24 1 10.6160 -0.2168 6.0817 25 1 11.0203 -2.0665 4.5666 26 7 12.0365 0.1870 4.3900 27 6 5.5579 0.7619 1.1598 28 6 4.0348 0.8805 1.2512 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8898 33 1 1.8933 -0.5138 0.8901 34 1 1.6768 1.9564 0.8899 35 1 1.6768 1.9563 -0.8900 36 1 3.7724 3.4380 0.6005 37 1 3.6039 3.1938 -1.1545 38 1 5.9502 3.7350 -0.5361 39 1 5.8220 2.0965 -1.2214 40 1 5.9290 2.8026 1.7476 41 1 8.0921 2.9972 0.4831 42 1 7.9049 1.3030 -0.0297 43 1 7.6906 1.4104 2.7845 44 1 9.5565 0.7402 4.0236 45 1 11.8986 2.2279 1.7571 46 1 14.3634 2.1014 2.0146 47 1 15.3049 0.7181 3.8470 48 1 14.4541 -2.2424 7.5167 49 1 5.8214 0.0957 0.3383 50 1 5.9494 0.3604 2.0946 51 1 3.7717 1.5349 2.0823 52 1 3.6030 -0.1067 1.4156 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881153831.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:09:07 Heat of formation + Delta-G solvation = -33.505087 kcal Electronic energy + Delta-G solvation = -29897.177578 eV Core-core repulsion = 25894.596570 eV Total energy + Delta-G solvation = -4002.581008 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.83660 -40.44101 -39.88127 -37.21152 -36.19943 -35.41928 -35.02070 -32.97863 -32.93918 -31.77533 -31.19489 -28.50317 -27.23200 -25.86812 -24.35664 -24.08286 -23.57942 -22.68442 -21.88947 -21.62177 -20.75623 -20.39664 -19.40031 -18.58833 -17.15893 -17.00262 -16.85829 -16.57215 -16.34248 -16.20032 -15.76153 -15.66006 -15.45832 -15.11228 -15.08829 -14.90192 -14.53732 -14.45327 -14.21194 -13.90946 -13.73850 -13.64186 -13.44338 -13.21712 -12.96853 -12.73097 -12.64828 -12.42644 -12.23909 -12.10066 -11.99325 -11.77363 -11.69324 -11.61866 -11.54183 -11.36512 -11.15130 -11.07083 -10.95251 -10.40521 -10.16652 -9.73778 -9.26145 -9.22613 -9.14498 -6.80821 0.60141 0.75826 1.39525 1.57422 1.70482 2.01631 2.06397 2.45220 2.70144 2.95744 3.05829 3.57703 3.67549 3.77750 3.85765 4.06258 4.08205 4.16741 4.31753 4.34647 4.40804 4.44889 4.49501 4.55119 4.61429 4.64347 4.70297 4.71246 4.74610 4.79198 4.81745 4.87436 4.89308 4.91494 4.98588 5.07547 5.18521 5.25491 5.26055 5.31612 5.34934 5.37909 5.38274 5.42474 5.45513 5.51974 5.68884 5.78993 5.92191 6.05607 6.19298 6.21386 6.42078 6.62401 6.85319 7.39140 7.52419 7.95971 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016099 B = 0.002082 C = 0.001866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.874914 B =13442.817009 C =14999.701664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.120 4.120 3 C 0.057 3.943 4 N -0.551 5.551 5 C 0.059 3.941 6 C -0.105 4.105 7 C -0.088 4.088 8 C 0.147 3.853 9 N -0.721 5.721 10 C 0.708 3.292 11 O -0.598 6.598 12 N -0.665 5.665 13 C 0.396 3.604 14 C -0.307 4.307 15 C -0.026 4.026 16 C -0.295 4.295 17 C 0.259 3.741 18 C -0.509 4.509 19 H 0.068 0.932 20 C 0.013 3.987 21 N -0.830 5.830 22 Si 1.191 2.809 23 H -0.330 1.330 24 H -0.271 1.271 25 H -0.303 1.303 26 N -0.613 5.613 27 C -0.112 4.112 28 C 0.056 3.944 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.032 0.968 35 H 0.077 0.923 36 H 0.035 0.965 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.068 0.932 40 H 0.085 0.915 41 H 0.066 0.934 42 H 0.058 0.942 43 H 0.412 0.588 44 H 0.415 0.585 45 H 0.150 0.850 46 H 0.144 0.856 47 H 0.115 0.885 48 H 0.280 0.720 49 H 0.063 0.937 50 H 0.073 0.927 51 H 0.035 0.965 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.687 9.416 -13.640 31.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.158 4.158 3 C -0.071 4.071 4 N -0.276 5.276 5 C -0.069 4.069 6 C -0.144 4.144 7 C -0.107 4.107 8 C 0.023 3.977 9 N -0.378 5.378 10 C 0.408 3.592 11 O -0.476 6.476 12 N -0.313 5.313 13 C 0.163 3.837 14 C -0.332 4.332 15 C -0.050 4.050 16 C -0.317 4.317 17 C 0.134 3.866 18 C -0.541 4.541 19 H 0.087 0.913 20 C -0.203 4.203 21 N -0.453 5.453 22 Si 1.024 2.976 23 H -0.263 1.263 24 H -0.198 1.198 25 H -0.232 1.232 26 N -0.339 5.339 27 C -0.150 4.150 28 C -0.072 4.072 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.050 0.950 35 H 0.096 0.904 36 H 0.054 0.946 37 H 0.100 0.900 38 H 0.100 0.900 39 H 0.087 0.913 40 H 0.104 0.896 41 H 0.084 0.916 42 H 0.076 0.924 43 H 0.249 0.751 44 H 0.252 0.748 45 H 0.167 0.833 46 H 0.161 0.839 47 H 0.133 0.867 48 H 0.091 0.909 49 H 0.081 0.919 50 H 0.092 0.908 51 H 0.053 0.947 52 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -27.772 8.267 -13.818 32.103 hybrid contribution 2.117 1.022 0.654 2.440 sum -25.656 9.290 -13.164 30.295 Atomic orbital electron populations 1.21720 0.94865 1.02097 1.02022 1.21523 0.96007 0.96102 1.02158 1.22144 0.86556 0.97465 1.00902 1.61947 1.07808 1.22539 1.35319 1.22072 0.95095 0.88662 1.01083 1.21530 0.94306 1.01752 0.96782 1.21377 0.91566 0.97852 0.99911 1.21350 0.92805 0.99708 0.83817 1.45014 1.03857 1.72147 1.16742 1.15860 0.83399 0.78110 0.81846 1.90816 1.60357 1.58389 1.38085 1.42294 1.04795 1.68376 1.15878 1.18107 0.83397 0.90888 0.91282 1.21885 0.93661 1.10817 1.06799 1.21332 0.94738 0.94182 0.94784 1.21752 0.99498 1.08659 1.01799 1.18432 0.86264 0.90288 0.91582 1.20707 0.96636 1.22489 1.14317 0.91339 1.28576 1.12303 0.89605 0.89856 1.70664 1.17602 1.33271 1.23794 0.81359 0.68190 0.75262 0.72781 1.26333 1.19803 1.23167 1.65859 1.14459 1.27404 1.26188 1.21660 0.94457 0.96513 1.02369 1.22108 0.95081 1.00100 0.89925 0.92312 0.92651 0.92297 0.91965 0.92276 0.94956 0.90424 0.94639 0.89951 0.89992 0.91326 0.89632 0.91616 0.92383 0.75132 0.74800 0.83292 0.83870 0.86728 0.90892 0.91865 0.90824 0.94677 0.90371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.91 71.98 0.71 -0.54 16 2 C -0.12 -1.26 5.86 30.60 0.18 -1.08 16 3 C 0.06 0.61 4.96 86.30 0.43 1.04 16 4 N -0.55 -6.94 4.66 -896.35 -4.18 -11.12 16 5 C 0.06 0.63 5.46 86.33 0.47 1.10 16 6 C -0.11 -1.18 5.38 30.65 0.16 -1.01 16 7 C -0.09 -1.07 2.29 -10.71 -0.02 -1.10 16 8 C 0.15 2.64 5.07 86.38 0.44 3.07 16 9 N -0.72 -15.24 5.31 -478.55 -2.54 -17.78 16 10 C 0.71 22.80 8.40 179.05 1.50 24.31 16 11 O -0.60 -23.49 13.14 -3.96 -0.05 -23.55 16 12 N -0.67 -23.74 5.42 -322.12 -1.75 -25.48 16 13 C 0.40 17.87 7.51 133.27 1.00 18.87 16 14 C -0.31 -13.53 8.83 22.72 0.20 -13.33 16 15 C -0.03 -1.11 10.15 22.40 0.23 -0.88 16 16 C -0.29 -14.06 9.83 22.87 0.22 -13.84 16 17 C 0.26 13.84 6.39 40.19 0.26 14.09 16 18 C -0.51 -28.73 9.58 23.46 0.22 -28.50 16 19 H 0.07 3.92 8.05 -2.91 -0.02 3.90 16 20 C 0.01 0.72 5.52 85.29 0.47 1.19 16 21 N -0.83 -46.52 13.65 21.84 0.30 -46.22 16 22 Si 1.19 57.10 25.53 68.60 1.75 58.85 16 23 H -0.33 -15.39 7.11 99.48 0.71 -14.69 16 24 H -0.27 -12.13 6.70 99.48 0.67 -11.47 16 25 H -0.30 -14.82 7.10 99.48 0.71 -14.11 16 26 N -0.61 -30.91 4.58 -186.37 -0.85 -31.77 16 27 C -0.11 -1.44 5.23 30.65 0.16 -1.28 16 28 C 0.06 0.68 5.29 86.33 0.46 1.14 16 29 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.06 0.66 6.43 -2.38 -0.02 0.64 16 34 H 0.03 0.34 8.12 -2.39 -0.02 0.33 16 35 H 0.08 0.76 7.99 -2.39 -0.02 0.74 16 36 H 0.04 0.37 8.14 -2.39 -0.02 0.35 16 37 H 0.08 0.78 8.02 -2.39 -0.02 0.76 16 38 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.07 0.90 8.14 -2.39 -0.02 0.89 16 40 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.41 6.24 7.70 -92.71 -0.71 5.53 16 44 H 0.42 12.60 8.84 -92.71 -0.82 11.78 16 45 H 0.15 6.43 5.33 -3.17 -0.02 6.41 16 46 H 0.14 4.94 8.06 -2.91 -0.02 4.92 16 47 H 0.11 5.12 8.06 -2.91 -0.02 5.10 16 48 H 0.28 15.24 8.72 -92.71 -0.81 14.43 16 49 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 50 H 0.07 0.87 7.26 -2.39 -0.02 0.85 16 51 H 0.04 0.41 8.14 -2.38 -0.02 0.39 16 52 H 0.08 0.96 6.21 -2.39 -0.01 0.95 16 Total: -1.00 -68.10 405.36 -0.91 -69.01 By element: Atomic # 1 Polarization: 25.51 SS G_CDS: -0.69 Total: 24.82 kcal Atomic # 6 Polarization: -3.86 SS G_CDS: 7.10 Total: 3.23 kcal Atomic # 7 Polarization: -123.35 SS G_CDS: -9.02 Total: -132.37 kcal Atomic # 8 Polarization: -23.49 SS G_CDS: -0.05 Total: -23.55 kcal Atomic # 14 Polarization: 57.10 SS G_CDS: 1.75 Total: 58.85 kcal Total: -68.10 -0.91 -69.01 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881153831.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.503 kcal (2) G-P(sol) polarization free energy of solvation -68.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds