Wall clock time and date at job start Wed Apr 1 2020 04:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50697 * 119.99807 * 2 1 4 4 N 1.46505 * 109.46971 * 125.27843 * 3 2 1 5 5 C 1.36736 * 127.13348 * 265.05086 * 4 3 2 6 6 C 1.50706 * 126.34608 * 359.96313 * 5 4 3 7 7 C 1.53175 * 109.54325 * 239.82229 * 6 5 4 8 8 C 1.53106 * 109.16009 * 183.24424 * 7 6 5 9 9 O 1.42907 * 109.48450 * 57.47202 * 8 7 6 10 10 C 1.42897 * 114.09945 * 298.89070 * 9 8 7 11 11 C 1.53093 * 109.41483 * 61.15927 * 10 9 8 12 12 N 1.30296 * 107.30688 * 179.83473 * 5 4 3 13 13 N 1.28527 * 110.04766 * 0.44149 * 12 5 4 14 14 C 1.31220 * 109.86471 * 359.71960 * 13 12 5 15 15 N 1.38572 * 126.47349 * 179.97438 * 14 13 12 16 16 C 1.46845 * 111.00075 * 271.91752 * 15 14 13 17 17 C 1.53041 * 109.52657 * 185.84061 * 16 15 14 18 18 C 1.53120 * 109.27602 * 300.81863 * 17 16 15 19 19 C 1.53117 * 109.15791 * 57.65704 * 18 17 16 20 20 H 1.09000 * 109.50661 * 62.28323 * 19 18 17 21 21 C 1.50701 * 109.50096 * 182.40424 * 19 18 17 22 22 H 1.07996 * 120.00497 * 119.80475 * 21 19 18 23 23 C 1.37874 * 120.00002 * 299.80028 * 21 19 18 24 24 N 1.31516 * 120.00111 * 359.97438 * 23 21 19 25 25 Si 1.86801 * 120.00184 * 180.02562 * 23 21 19 26 26 H 1.48495 * 109.47567 * 89.99750 * 25 23 21 27 27 H 1.48507 * 109.46952 * 210.00035 * 25 23 21 28 28 H 1.48492 * 109.47107 * 329.99487 * 25 23 21 29 29 C 1.46849 * 111.00372 * 36.12572 * 15 14 13 30 30 H 1.08004 * 120.00193 * 179.72308 * 1 2 3 31 31 H 1.08000 * 120.00159 * 359.72719 * 1 2 3 32 32 H 1.08000 * 119.99639 * 180.27905 * 2 1 3 33 33 H 1.09003 * 109.47229 * 245.27326 * 3 2 1 34 34 H 1.09000 * 109.47179 * 5.27741 * 3 2 1 35 35 H 1.09000 * 109.54356 * 0.02562 * 6 5 4 36 36 H 1.09006 * 109.52629 * 303.06004 * 7 6 5 37 37 H 1.09001 * 109.52079 * 63.24859 * 7 6 5 38 38 H 1.09000 * 109.40325 * 297.49505 * 8 7 6 39 39 H 1.08996 * 109.49395 * 177.51125 * 8 7 6 40 40 H 1.09003 * 109.48288 * 301.17838 * 10 9 8 41 41 H 1.09001 * 109.48758 * 181.14591 * 10 9 8 42 42 H 1.09004 * 109.52276 * 182.48137 * 11 10 9 43 43 H 1.09002 * 109.52227 * 62.29434 * 11 10 9 44 44 H 1.09005 * 109.46214 * 305.85884 * 16 15 14 45 45 H 1.09001 * 109.46798 * 65.82270 * 16 15 14 46 46 H 1.09001 * 109.50192 * 180.87919 * 17 16 15 47 47 H 1.08999 * 109.53330 * 60.78288 * 17 16 15 48 48 H 1.08997 * 109.52198 * 297.74691 * 18 17 16 49 49 H 1.09001 * 109.51704 * 177.55497 * 18 17 16 50 50 H 0.96995 * 120.00268 * 179.97438 * 24 23 21 51 51 H 1.09000 * 109.46497 * 294.17799 * 29 15 14 52 52 H 1.08995 * 109.45819 * 54.15574 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9985 1.3291 1.1276 5 6 2.7861 1.8718 2.3646 6 6 1.5332 2.5667 2.8319 7 6 1.8668 4.0049 3.2400 8 6 0.6054 4.6770 3.7890 9 8 0.1025 3.9187 4.8910 10 6 -0.2711 2.5806 4.5566 11 6 0.9556 1.8237 4.0405 12 7 3.8667 1.6743 3.0652 13 7 4.7440 1.0567 2.3575 14 6 4.2640 0.8199 1.1594 15 7 4.9187 0.1751 0.1223 16 6 5.6981 1.1263 -0.6803 17 6 6.2873 0.4074 -1.8961 18 6 7.1819 -0.7405 -1.4201 19 6 6.3579 -1.6909 -0.5470 20 1 5.5513 -2.1224 -1.1396 21 6 7.2451 -2.7919 -0.0259 22 1 7.3747 -2.9231 1.0382 23 6 7.8914 -3.6320 -0.9077 24 7 7.7332 -3.4728 -2.2035 25 14 8.9906 -4.9973 -0.2618 26 1 8.1857 -6.2295 -0.0648 27 1 10.0744 -5.2653 -1.2411 28 1 9.5858 -4.5825 1.0338 29 6 5.7667 -0.9112 0.6298 30 1 -0.5400 -0.9353 -0.0045 31 1 -0.5400 0.9353 0.0045 32 1 1.8499 -0.9353 -0.0046 33 1 2.6174 1.4049 -0.9335 34 1 1.3589 2.1314 0.0945 35 1 0.7995 2.5769 2.0259 36 1 2.6377 3.9955 4.0106 37 1 2.2259 4.5561 2.3709 38 1 -0.1504 4.7238 3.0050 39 1 0.8466 5.6863 4.1221 40 1 -1.0383 2.6000 3.7825 41 1 -0.6611 2.0797 5.4426 42 1 0.6637 0.8164 3.7435 43 1 1.7075 1.7688 4.8278 44 1 5.0494 1.9354 -1.0159 45 1 6.5060 1.5365 -0.0742 46 1 6.8786 1.1102 -2.4831 47 1 5.4800 0.0090 -2.5105 48 1 8.0116 -0.3387 -0.8387 49 1 7.5691 -1.2823 -2.2830 50 1 8.1881 -4.0635 -2.8239 51 1 6.5742 -0.4915 1.2297 52 1 5.1677 -1.5820 1.2454 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000908680177.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:36 Heat of formation + Delta-G solvation = 49.093794 kcal Electronic energy + Delta-G solvation = -31720.264765 eV Core-core repulsion = 27721.265514 eV Total energy + Delta-G solvation = -3998.999251 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.86971 -39.56623 -38.32038 -36.27919 -34.78208 -33.73816 -32.72016 -31.81888 -31.43885 -30.01782 -28.83674 -26.93203 -25.47254 -25.02753 -23.86352 -23.84239 -21.81677 -21.63972 -21.06453 -19.99573 -19.92630 -18.59040 -17.47445 -16.60862 -16.45177 -16.40385 -16.06362 -15.62080 -15.11181 -15.03209 -14.93289 -14.55445 -14.20853 -14.04406 -13.76474 -13.57146 -13.43710 -12.88745 -12.73769 -12.69619 -12.56840 -12.48242 -11.90445 -11.82311 -11.62276 -11.57025 -11.38731 -11.19172 -10.97888 -10.83125 -10.73139 -10.67001 -10.37573 -10.24675 -10.02732 -9.94546 -9.91317 -9.81858 -9.58571 -9.26214 -9.07518 -8.73742 -8.36533 -8.03804 -6.02248 -4.07850 1.68793 1.91006 2.55144 3.02360 3.30416 3.37105 3.41709 3.55862 4.04250 4.13059 4.33148 4.40663 4.44611 4.45855 4.56144 4.67039 4.76894 4.88850 5.00687 5.05927 5.16663 5.19896 5.25658 5.28466 5.31779 5.35388 5.47486 5.52313 5.57170 5.62326 5.72387 5.79443 5.84577 5.87100 5.97031 6.08671 6.19439 6.30665 6.34230 6.36284 6.39024 6.51855 6.64724 6.75542 6.85736 6.86646 7.02916 7.26731 7.36756 7.69392 7.72528 7.97368 8.08239 8.40327 8.95096 8.97214 9.56910 11.04135 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017496 B = 0.002599 C = 0.002556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.986812 B =10771.923257 C =10950.704826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.165 4.165 3 C 0.142 3.858 4 N -0.468 5.468 5 C 0.169 3.831 6 C 0.009 3.991 7 C -0.146 4.146 8 C 0.064 3.936 9 O -0.381 6.381 10 C 0.064 3.936 11 C -0.145 4.145 12 N -0.280 5.280 13 N -0.316 5.316 14 C 0.370 3.630 15 N -0.465 5.465 16 C 0.072 3.928 17 C -0.115 4.115 18 C -0.114 4.114 19 C 0.057 3.943 20 H 0.035 0.965 21 C -0.513 4.513 22 H 0.056 0.944 23 C 0.064 3.936 24 N -0.890 5.890 25 Si 0.892 3.108 26 H -0.281 1.281 27 H -0.287 1.287 28 H -0.274 1.274 29 C 0.084 3.916 30 H 0.106 0.894 31 H 0.097 0.903 32 H 0.123 0.877 33 H 0.107 0.893 34 H 0.092 0.908 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.074 0.926 38 H 0.050 0.950 39 H 0.097 0.903 40 H 0.050 0.950 41 H 0.098 0.902 42 H 0.075 0.925 43 H 0.087 0.913 44 H 0.055 0.945 45 H 0.042 0.958 46 H 0.055 0.945 47 H 0.063 0.937 48 H 0.035 0.965 49 H 0.095 0.905 50 H 0.260 0.740 51 H 0.044 0.956 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.260 14.890 4.024 23.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.184 4.184 3 C 0.019 3.981 4 N -0.162 5.162 5 C -0.099 4.099 6 C -0.012 4.012 7 C -0.185 4.185 8 C -0.013 4.013 9 O -0.299 6.299 10 C -0.013 4.013 11 C -0.184 4.184 12 N -0.120 5.120 13 N -0.160 5.160 14 C 0.014 3.986 15 N -0.191 5.191 16 C -0.055 4.055 17 C -0.153 4.153 18 C -0.152 4.152 19 C 0.038 3.962 20 H 0.053 0.947 21 C -0.552 4.552 22 H 0.074 0.926 23 C -0.137 4.137 24 N -0.528 5.528 25 Si 0.720 3.280 26 H -0.207 1.207 27 H -0.212 1.212 28 H -0.198 1.198 29 C -0.042 4.042 30 H 0.124 0.876 31 H 0.115 0.885 32 H 0.141 0.859 33 H 0.125 0.875 34 H 0.110 0.890 35 H 0.100 0.900 36 H 0.106 0.894 37 H 0.092 0.908 38 H 0.068 0.932 39 H 0.116 0.884 40 H 0.068 0.932 41 H 0.116 0.884 42 H 0.094 0.906 43 H 0.106 0.894 44 H 0.074 0.926 45 H 0.060 0.940 46 H 0.073 0.927 47 H 0.081 0.919 48 H 0.054 0.946 49 H 0.113 0.887 50 H 0.070 0.930 51 H 0.062 0.938 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -17.565 14.692 4.867 23.411 hybrid contribution 0.351 -0.786 -0.851 1.211 sum -17.214 13.907 4.015 22.491 Atomic orbital electron populations 1.23883 0.95412 1.02272 0.99503 1.23171 0.96112 0.98605 1.00531 1.20882 0.91492 0.96954 0.88726 1.46326 1.12732 1.44705 1.12434 1.24431 0.99582 1.03179 0.82678 1.19484 0.89684 0.94107 0.97888 1.22249 0.99701 0.93955 1.02569 1.22582 0.93959 0.95340 0.89437 1.87956 1.83392 1.24144 1.34457 1.22592 0.95007 0.82762 1.00942 1.22228 0.99098 0.99286 0.97752 1.73941 0.98362 1.14339 1.25354 1.74738 1.22648 1.16557 1.02020 1.22822 0.84439 0.97569 0.93747 1.58966 1.32665 1.10505 1.16916 1.22135 0.95079 0.92968 0.95300 1.21709 0.99777 0.98669 0.95181 1.21708 0.96881 0.94232 1.02350 1.18708 0.94704 0.92044 0.90723 0.94730 1.21091 1.27739 1.13355 0.93035 0.92563 1.24908 0.96573 0.97394 0.94832 1.69877 1.43480 1.38344 1.01126 0.86596 0.80342 0.82336 0.78776 1.20711 1.21239 1.19846 1.22395 0.93436 0.89151 0.99216 0.87621 0.88504 0.85872 0.87535 0.89011 0.89995 0.89374 0.90773 0.93210 0.88445 0.93156 0.88408 0.90602 0.89406 0.92604 0.93978 0.92656 0.91854 0.94571 0.88673 0.93003 0.93754 0.91972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.39 14.32 29.01 0.42 -0.97 16 2 C -0.17 -1.75 9.85 -36.03 -0.35 -2.11 16 3 C 0.14 1.49 6.41 -5.19 -0.03 1.46 16 4 N -0.47 -6.68 2.79 -115.37 -0.32 -7.01 16 5 C 0.17 2.38 6.59 -154.01 -1.01 1.36 16 6 C 0.01 0.09 2.63 -91.59 -0.24 -0.15 16 7 C -0.15 -1.31 5.41 -26.59 -0.14 -1.46 16 8 C 0.06 0.47 6.84 37.21 0.25 0.73 16 9 O -0.38 -3.62 10.77 -35.23 -0.38 -4.00 16 10 C 0.06 0.49 6.84 37.21 0.25 0.74 16 11 C -0.15 -1.37 5.41 -26.59 -0.14 -1.52 16 12 N -0.28 -5.02 12.18 32.99 0.40 -4.62 16 13 N -0.32 -6.35 11.69 30.31 0.35 -5.99 16 14 C 0.37 6.66 6.71 -318.89 -2.14 4.52 16 15 N -0.46 -8.66 4.67 -174.55 -0.82 -9.48 16 16 C 0.07 1.24 5.39 -3.83 -0.02 1.22 16 17 C -0.12 -2.09 6.09 -26.65 -0.16 -2.25 16 18 C -0.11 -2.57 5.03 -26.61 -0.13 -2.71 16 19 C 0.06 1.39 2.26 -91.69 -0.21 1.18 16 20 H 0.03 0.92 8.14 -51.93 -0.42 0.49 16 21 C -0.51 -13.93 8.56 -34.44 -0.29 -14.22 16 22 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 23 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 24 N -0.89 -24.75 11.36 55.43 0.63 -24.12 16 25 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 26 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 27 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 28 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 29 C 0.08 1.83 4.31 -3.83 -0.02 1.81 16 30 H 0.11 0.79 8.06 -52.48 -0.42 0.36 16 31 H 0.10 0.58 7.84 -52.49 -0.41 0.17 16 32 H 0.12 1.62 8.06 -52.49 -0.42 1.19 16 33 H 0.11 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.09 0.69 6.67 -51.93 -0.35 0.34 16 35 H 0.08 0.64 6.83 -51.93 -0.35 0.28 16 36 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.06 0.83 8.10 -51.93 -0.42 0.41 16 45 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 47 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 48 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 49 H 0.09 2.40 6.17 -51.93 -0.32 2.08 16 50 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 51 H 0.04 1.03 8.06 -51.93 -0.42 0.61 16 52 H 0.06 1.41 8.10 -51.93 -0.42 0.99 16 LS Contribution 410.22 15.07 6.18 6.18 Total: -1.00 -31.10 410.22 -12.05 -43.14 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -9.00 Total: 0.41 kcal Atomic # 6 Polarization: -6.61 SS G_CDS: -4.08 Total: -10.69 kcal Atomic # 7 Polarization: -51.46 SS G_CDS: 0.25 Total: -51.22 kcal Atomic # 8 Polarization: -3.62 SS G_CDS: -0.38 Total: -4.00 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -31.10 -12.05 -43.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000908680177.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.237 kcal (2) G-P(sol) polarization free energy of solvation -31.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds