Wall clock time and date at job start Wed Apr 1 2020 04:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50697 * 119.99807 * 2 1 4 4 N 1.46505 * 109.46971 * 125.27843 * 3 2 1 5 5 C 1.36736 * 127.13348 * 265.05086 * 4 3 2 6 6 C 1.50706 * 126.34608 * 359.96313 * 5 4 3 7 7 C 1.53175 * 109.54325 * 239.82229 * 6 5 4 8 8 C 1.53106 * 109.16009 * 183.24424 * 7 6 5 9 9 O 1.42907 * 109.48450 * 57.47202 * 8 7 6 10 10 C 1.42897 * 114.09945 * 298.89070 * 9 8 7 11 11 C 1.53093 * 109.41483 * 61.15927 * 10 9 8 12 12 N 1.30296 * 107.30688 * 179.83473 * 5 4 3 13 13 N 1.28527 * 110.04766 * 0.44149 * 12 5 4 14 14 C 1.31220 * 109.86471 * 359.71960 * 13 12 5 15 15 N 1.38572 * 126.47349 * 179.97438 * 14 13 12 16 16 C 1.46845 * 111.00075 * 271.91752 * 15 14 13 17 17 C 1.53041 * 109.52657 * 185.84061 * 16 15 14 18 18 C 1.53120 * 109.27602 * 300.81863 * 17 16 15 19 19 C 1.53117 * 109.15791 * 57.65704 * 18 17 16 20 20 H 1.09000 * 109.50661 * 62.28323 * 19 18 17 21 21 C 1.50701 * 109.50096 * 182.40424 * 19 18 17 22 22 H 1.07996 * 120.00497 * 119.80475 * 21 19 18 23 23 C 1.37874 * 120.00002 * 299.80028 * 21 19 18 24 24 N 1.31516 * 120.00111 * 359.97438 * 23 21 19 25 25 Si 1.86801 * 120.00184 * 180.02562 * 23 21 19 26 26 H 1.48495 * 109.47567 * 89.99750 * 25 23 21 27 27 H 1.48507 * 109.46952 * 210.00035 * 25 23 21 28 28 H 1.48492 * 109.47107 * 329.99487 * 25 23 21 29 29 C 1.46849 * 111.00372 * 36.12572 * 15 14 13 30 30 H 1.08004 * 120.00193 * 179.72308 * 1 2 3 31 31 H 1.08000 * 120.00159 * 359.72719 * 1 2 3 32 32 H 1.08000 * 119.99639 * 180.27905 * 2 1 3 33 33 H 1.09003 * 109.47229 * 245.27326 * 3 2 1 34 34 H 1.09000 * 109.47179 * 5.27741 * 3 2 1 35 35 H 1.09000 * 109.54356 * 0.02562 * 6 5 4 36 36 H 1.09006 * 109.52629 * 303.06004 * 7 6 5 37 37 H 1.09001 * 109.52079 * 63.24859 * 7 6 5 38 38 H 1.09000 * 109.40325 * 297.49505 * 8 7 6 39 39 H 1.08996 * 109.49395 * 177.51125 * 8 7 6 40 40 H 1.09003 * 109.48288 * 301.17838 * 10 9 8 41 41 H 1.09001 * 109.48758 * 181.14591 * 10 9 8 42 42 H 1.09004 * 109.52276 * 182.48137 * 11 10 9 43 43 H 1.09002 * 109.52227 * 62.29434 * 11 10 9 44 44 H 1.09005 * 109.46214 * 305.85884 * 16 15 14 45 45 H 1.09001 * 109.46798 * 65.82270 * 16 15 14 46 46 H 1.09001 * 109.50192 * 180.87919 * 17 16 15 47 47 H 1.08999 * 109.53330 * 60.78288 * 17 16 15 48 48 H 1.08997 * 109.52198 * 297.74691 * 18 17 16 49 49 H 1.09001 * 109.51704 * 177.55497 * 18 17 16 50 50 H 0.96995 * 120.00268 * 179.97438 * 24 23 21 51 51 H 1.09000 * 109.46497 * 294.17799 * 29 15 14 52 52 H 1.08995 * 109.45819 * 54.15574 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9985 1.3291 1.1276 5 6 2.7861 1.8718 2.3646 6 6 1.5332 2.5667 2.8319 7 6 1.8668 4.0049 3.2400 8 6 0.6054 4.6770 3.7890 9 8 0.1025 3.9187 4.8910 10 6 -0.2711 2.5806 4.5566 11 6 0.9556 1.8237 4.0405 12 7 3.8667 1.6743 3.0652 13 7 4.7440 1.0567 2.3575 14 6 4.2640 0.8199 1.1594 15 7 4.9187 0.1751 0.1223 16 6 5.6981 1.1263 -0.6803 17 6 6.2873 0.4074 -1.8961 18 6 7.1819 -0.7405 -1.4201 19 6 6.3579 -1.6909 -0.5470 20 1 5.5513 -2.1224 -1.1396 21 6 7.2451 -2.7919 -0.0259 22 1 7.3747 -2.9231 1.0382 23 6 7.8914 -3.6320 -0.9077 24 7 7.7332 -3.4728 -2.2035 25 14 8.9906 -4.9973 -0.2618 26 1 8.1857 -6.2295 -0.0648 27 1 10.0744 -5.2653 -1.2411 28 1 9.5858 -4.5825 1.0338 29 6 5.7667 -0.9112 0.6298 30 1 -0.5400 -0.9353 -0.0045 31 1 -0.5400 0.9353 0.0045 32 1 1.8499 -0.9353 -0.0046 33 1 2.6174 1.4049 -0.9335 34 1 1.3589 2.1314 0.0945 35 1 0.7995 2.5769 2.0259 36 1 2.6377 3.9955 4.0106 37 1 2.2259 4.5561 2.3709 38 1 -0.1504 4.7238 3.0050 39 1 0.8466 5.6863 4.1221 40 1 -1.0383 2.6000 3.7825 41 1 -0.6611 2.0797 5.4426 42 1 0.6637 0.8164 3.7435 43 1 1.7075 1.7688 4.8278 44 1 5.0494 1.9354 -1.0159 45 1 6.5060 1.5365 -0.0742 46 1 6.8786 1.1102 -2.4831 47 1 5.4800 0.0090 -2.5105 48 1 8.0116 -0.3387 -0.8387 49 1 7.5691 -1.2823 -2.2830 50 1 8.1881 -4.0635 -2.8239 51 1 6.5742 -0.4915 1.2297 52 1 5.1677 -1.5820 1.2454 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000908680177.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:35 Heat of formation + Delta-G solvation = 32.763650 kcal Electronic energy + Delta-G solvation = -31720.972894 eV Core-core repulsion = 27721.265514 eV Total energy + Delta-G solvation = -3999.707379 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -44.11454 -40.31765 -39.85352 -37.22991 -35.97890 -35.20643 -33.82629 -33.39220 -32.06169 -31.85758 -30.08136 -27.84785 -27.06222 -26.29084 -25.42600 -24.50469 -23.38001 -22.78910 -22.22878 -21.01460 -20.80769 -20.22429 -18.85539 -18.13221 -17.43581 -17.28017 -17.13769 -16.83377 -16.50968 -16.01086 -15.90958 -15.66401 -15.58529 -15.23899 -14.80128 -14.66203 -14.55822 -14.50052 -14.22922 -14.13315 -13.57004 -13.45860 -13.30467 -12.90217 -12.75260 -12.67016 -12.61985 -12.57849 -12.33479 -12.28721 -11.97979 -11.91386 -11.82948 -11.68947 -11.42977 -11.30368 -11.11685 -11.10797 -10.82300 -10.55854 -10.52919 -10.43609 -10.31871 -9.53743 -8.12770 -6.25774 0.62197 0.92037 1.39132 1.40278 1.50170 1.54974 1.72790 2.40202 2.73184 2.99599 3.14906 3.20759 3.53938 3.65118 3.74295 3.81725 3.84040 4.00467 4.02437 4.07346 4.13011 4.25344 4.32968 4.35662 4.38835 4.45718 4.49640 4.52175 4.57048 4.65112 4.74268 4.76454 4.78933 4.83440 4.87350 4.90251 4.95816 5.01338 5.04956 5.10003 5.13240 5.25173 5.33371 5.41584 5.53851 5.59174 5.61564 5.67496 5.74655 5.96023 6.09048 6.28152 6.31341 6.35131 6.82596 7.41679 7.68335 8.92231 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017496 B = 0.002599 C = 0.002556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.986812 B =10771.923257 C =10950.704826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.201 4.201 3 C 0.138 3.862 4 N -0.460 5.460 5 C 0.193 3.807 6 C 0.010 3.990 7 C -0.142 4.142 8 C 0.065 3.935 9 O -0.403 6.403 10 C 0.067 3.933 11 C -0.142 4.142 12 N -0.323 5.323 13 N -0.360 5.360 14 C 0.353 3.647 15 N -0.458 5.458 16 C 0.075 3.925 17 C -0.103 4.103 18 C -0.107 4.107 19 C 0.061 3.939 20 H 0.008 0.992 21 C -0.540 4.540 22 H 0.044 0.956 23 C 0.022 3.978 24 N -0.909 5.909 25 Si 0.951 3.049 26 H -0.275 1.275 27 H -0.278 1.278 28 H -0.274 1.274 29 C 0.106 3.894 30 H 0.110 0.890 31 H 0.132 0.868 32 H 0.084 0.916 33 H 0.105 0.895 34 H 0.136 0.864 35 H 0.120 0.880 36 H 0.057 0.943 37 H 0.085 0.915 38 H 0.079 0.921 39 H 0.107 0.893 40 H 0.079 0.921 41 H 0.105 0.895 42 H 0.076 0.924 43 H 0.056 0.944 44 H 0.091 0.909 45 H 0.029 0.971 46 H 0.084 0.916 47 H 0.066 0.934 48 H 0.023 0.977 49 H 0.069 0.931 50 H 0.263 0.737 51 H 0.024 0.976 52 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.453 16.910 3.112 27.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.220 4.220 3 C 0.017 3.983 4 N -0.152 5.152 5 C -0.076 4.076 6 C -0.011 4.011 7 C -0.181 4.181 8 C -0.011 4.011 9 O -0.323 6.323 10 C -0.009 4.009 11 C -0.181 4.181 12 N -0.162 5.162 13 N -0.203 5.203 14 C -0.005 4.005 15 N -0.183 5.183 16 C -0.051 4.051 17 C -0.141 4.141 18 C -0.145 4.145 19 C 0.042 3.958 20 H 0.026 0.974 21 C -0.579 4.579 22 H 0.062 0.938 23 C -0.177 4.177 24 N -0.548 5.548 25 Si 0.777 3.223 26 H -0.201 1.201 27 H -0.203 1.203 28 H -0.199 1.199 29 C -0.021 4.021 30 H 0.128 0.872 31 H 0.150 0.850 32 H 0.102 0.898 33 H 0.123 0.877 34 H 0.153 0.847 35 H 0.137 0.863 36 H 0.076 0.924 37 H 0.104 0.896 38 H 0.097 0.903 39 H 0.125 0.875 40 H 0.097 0.903 41 H 0.123 0.877 42 H 0.095 0.905 43 H 0.075 0.925 44 H 0.110 0.890 45 H 0.048 0.952 46 H 0.103 0.897 47 H 0.084 0.916 48 H 0.042 0.958 49 H 0.087 0.913 50 H 0.072 0.928 51 H 0.042 0.958 52 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -20.780 16.725 3.944 26.965 hybrid contribution 1.219 -1.412 -0.536 1.941 sum -19.561 15.312 3.408 25.074 Atomic orbital electron populations 1.24175 0.94239 1.04163 0.94904 1.22921 0.97058 0.97223 1.04807 1.21255 0.91434 0.98382 0.87212 1.46536 1.11765 1.43429 1.13479 1.25304 0.99638 1.00764 0.81857 1.19818 0.88228 0.94018 0.99043 1.22218 1.00053 0.93639 1.02177 1.22710 0.93541 0.95193 0.89682 1.87940 1.83512 1.24894 1.35905 1.22672 0.94292 0.81806 1.02150 1.22188 0.99321 0.99847 0.96749 1.73860 0.99788 1.16087 1.26433 1.74614 1.24641 1.17840 1.03232 1.22657 0.85953 0.98754 0.93153 1.58878 1.31954 1.10405 1.17090 1.22172 0.95341 0.93277 0.94330 1.21588 0.99244 0.97511 0.95777 1.21510 0.97074 0.95304 1.00634 1.18572 0.93738 0.92187 0.91310 0.97422 1.21395 1.28844 1.14944 0.92675 0.93783 1.25595 0.97681 0.99371 0.95080 1.69983 1.43967 1.38997 1.01869 0.85668 0.78784 0.79669 0.78220 1.20106 1.20308 1.19895 1.21892 0.92833 0.89811 0.97577 0.87207 0.84959 0.89803 0.87682 0.84653 0.86256 0.92419 0.89645 0.90333 0.87477 0.90296 0.87722 0.90488 0.92532 0.89033 0.95239 0.89725 0.91562 0.95819 0.91262 0.92773 0.95788 0.93914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 14.32 67.78 0.97 -0.68 16 2 C -0.20 -3.89 9.85 25.65 0.25 -3.64 16 3 C 0.14 2.50 6.41 85.63 0.55 3.05 16 4 N -0.46 -12.60 2.79 -518.91 -1.45 -14.05 16 5 C 0.19 5.25 6.59 137.64 0.91 6.16 16 6 C 0.01 0.16 2.63 -11.42 -0.03 0.13 16 7 C -0.14 -2.21 5.41 30.69 0.17 -2.05 16 8 C 0.07 0.73 6.84 72.02 0.49 1.22 16 9 O -0.40 -6.55 10.77 -148.98 -1.60 -8.16 16 10 C 0.07 0.82 6.84 72.01 0.49 1.31 16 11 C -0.14 -2.45 5.41 30.69 0.17 -2.28 16 12 N -0.32 -11.92 12.18 -49.53 -0.60 -12.52 16 13 N -0.36 -15.10 11.69 -58.01 -0.68 -15.78 16 14 C 0.35 12.96 6.71 260.12 1.75 14.70 16 15 N -0.46 -17.59 4.67 -706.16 -3.30 -20.89 16 16 C 0.08 2.57 5.39 86.33 0.47 3.03 16 17 C -0.10 -3.70 6.09 30.65 0.19 -3.51 16 18 C -0.11 -5.03 5.03 30.67 0.15 -4.87 16 19 C 0.06 3.13 2.26 -11.49 -0.03 3.11 16 20 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 21 C -0.54 -30.76 8.56 25.60 0.22 -30.54 16 22 H 0.04 2.54 7.74 -2.91 -0.02 2.52 16 23 C 0.02 1.25 5.30 84.65 0.45 1.69 16 24 N -0.91 -51.88 11.36 21.45 0.24 -51.63 16 25 Si 0.95 44.41 29.54 68.60 2.03 46.43 16 26 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 27 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 28 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 29 C 0.11 4.94 4.31 86.33 0.37 5.32 16 30 H 0.11 1.26 8.06 -2.91 -0.02 1.24 16 31 H 0.13 0.70 7.84 -2.91 -0.02 0.68 16 32 H 0.08 2.29 8.06 -2.91 -0.02 2.26 16 33 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.14 1.25 6.67 -2.39 -0.02 1.23 16 35 H 0.12 1.16 6.83 -2.39 -0.02 1.14 16 36 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 37 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 39 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 41 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 44 H 0.09 2.51 8.10 -2.38 -0.02 2.49 16 45 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 46 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 47 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 48 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 49 H 0.07 3.62 6.17 -2.39 -0.01 3.60 16 50 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 51 H 0.02 1.20 8.06 -2.39 -0.02 1.18 16 52 H 0.04 2.10 8.10 -2.39 -0.02 2.09 16 Total: -1.00 -73.92 410.22 3.05 -70.86 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: 0.88 Total: 13.57 kcal Atomic # 6 Polarization: -15.38 SS G_CDS: 7.53 Total: -7.85 kcal Atomic # 7 Polarization: -109.08 SS G_CDS: -5.78 Total: -114.86 kcal Atomic # 8 Polarization: -6.55 SS G_CDS: -1.60 Total: -8.16 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.43 kcal Total: -73.92 3.05 -70.86 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000908680177.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.627 kcal (2) G-P(sol) polarization free energy of solvation -73.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds