Wall clock time and date at job start Wed Apr 1 2020 04:37:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50702 * 120.00204 * 2 1 4 4 N 1.46500 * 109.46883 * 124.99760 * 3 2 1 5 5 C 1.36738 * 127.13184 * 90.00781 * 4 3 2 6 6 C 1.50694 * 126.35035 * 359.93818 * 5 4 3 7 7 C 1.53176 * 109.54272 * 239.82337 * 6 5 4 8 8 C 1.53107 * 109.15418 * 183.24278 * 7 6 5 9 9 O 1.42903 * 109.49256 * 57.47543 * 8 7 6 10 10 C 1.42900 * 114.09439 * 298.88863 * 9 8 7 11 11 C 1.53098 * 109.41361 * 61.15557 * 10 9 8 12 12 N 1.30294 * 107.30236 * 179.97438 * 5 4 3 13 13 N 1.28527 * 110.05908 * 0.02562 * 12 5 4 14 14 C 1.31225 * 109.85410 * 359.73623 * 13 12 5 15 15 N 1.38581 * 126.47450 * 180.25891 * 14 13 12 16 16 C 1.46841 * 111.00204 * 236.22203 * 15 14 13 17 17 C 1.53043 * 109.52548 * 174.15972 * 16 15 14 18 18 C 1.53123 * 109.27441 * 59.17730 * 17 16 15 19 19 C 1.53116 * 109.16366 * 302.34635 * 18 17 16 20 20 H 1.09007 * 109.49801 * 297.72076 * 19 18 17 21 21 C 1.50689 * 109.50576 * 177.63795 * 19 18 17 22 22 H 1.08001 * 120.00046 * 240.00412 * 21 19 18 23 23 C 1.37887 * 120.00142 * 59.99626 * 21 19 18 24 24 N 1.31509 * 119.99490 * 0.02562 * 23 21 19 25 25 Si 1.86795 * 120.00060 * 180.02562 * 23 21 19 26 26 H 1.48507 * 109.47034 * 90.00163 * 25 23 21 27 27 H 1.48493 * 109.47185 * 210.00192 * 25 23 21 28 28 H 1.48503 * 109.47102 * 330.00422 * 25 23 21 29 29 C 1.46846 * 110.99986 * 112.01105 * 15 14 13 30 30 H 1.08002 * 120.00352 * 0.02562 * 1 2 3 31 31 H 1.08005 * 119.99880 * 179.72197 * 1 2 3 32 32 H 1.08002 * 120.00350 * 180.02562 * 2 1 3 33 33 H 1.08998 * 109.47600 * 245.00508 * 3 2 1 34 34 H 1.09004 * 109.46937 * 5.00335 * 3 2 1 35 35 H 1.08996 * 109.54504 * 0.02562 * 6 5 4 36 36 H 1.09001 * 109.52554 * 303.05716 * 7 6 5 37 37 H 1.08992 * 109.52221 * 63.25135 * 7 6 5 38 38 H 1.09006 * 109.40680 * 297.48942 * 8 7 6 39 39 H 1.09000 * 109.48330 * 177.50488 * 8 7 6 40 40 H 1.09004 * 109.48165 * 301.17258 * 10 9 8 41 41 H 1.09004 * 109.48022 * 181.13944 * 10 9 8 42 42 H 1.09005 * 109.51985 * 182.48460 * 11 10 9 43 43 H 1.08997 * 109.52214 * 62.29960 * 11 10 9 44 44 H 1.09004 * 109.46287 * 294.17604 * 16 15 14 45 45 H 1.09005 * 109.46416 * 54.14452 * 16 15 14 46 46 H 1.09000 * 109.50388 * 179.11844 * 17 16 15 47 47 H 1.08995 * 109.49942 * 299.23685 * 17 16 15 48 48 H 1.09000 * 109.52294 * 62.25756 * 18 17 16 49 49 H 1.09005 * 109.51912 * 182.44140 * 18 17 16 50 50 H 0.97003 * 119.99523 * 179.97438 * 24 23 21 51 51 H 1.09005 * 109.46226 * 305.85488 * 29 15 14 52 52 H 1.08996 * 109.46558 * 65.82326 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3318 1.1315 5 6 4.2912 0.9005 1.1437 6 6 5.0437 0.2999 -0.0155 7 6 5.5063 -1.1136 0.3511 8 6 6.3384 -1.6844 -0.8005 9 8 7.4445 -0.8189 -1.0643 10 6 7.0701 0.5026 -1.4587 11 6 6.2694 1.1621 -0.3327 12 7 4.7560 1.1043 2.3437 13 7 3.8474 1.6306 3.0849 14 6 2.7467 1.7971 2.3902 15 7 1.5572 2.3403 2.8490 16 6 0.4405 1.4086 2.6463 17 6 -0.8244 1.9778 3.2931 18 6 -1.1471 3.3356 2.6630 19 6 0.0506 4.2718 2.8455 20 1 0.2277 4.4330 3.9089 21 6 -0.2362 5.5918 2.1775 22 1 0.4033 5.9445 1.3818 23 6 -1.3151 6.3492 2.5819 24 7 -2.0935 5.9197 3.5509 25 14 -1.6710 7.9850 1.7532 26 1 -2.5745 7.7670 0.5950 27 1 -2.3228 8.9002 2.7241 28 1 -0.3985 8.5882 1.2817 29 6 1.2900 3.6360 2.2117 30 1 -0.5401 0.9353 -0.0004 31 1 -0.5400 -0.9354 -0.0045 32 1 1.8500 -0.9353 -0.0004 33 1 2.6212 1.4027 -0.9314 34 1 1.3585 2.1317 0.0896 35 1 4.3933 0.2560 -0.8890 36 1 6.1152 -1.0749 1.2543 37 1 4.6371 -1.7481 0.5235 38 1 5.7168 -1.7621 -1.6926 39 1 6.7074 -2.6729 -0.5273 40 1 6.4581 0.4535 -2.3594 41 1 7.9663 1.0896 -1.6596 42 1 5.9452 2.1537 -0.6488 43 1 6.8941 1.2483 0.5563 44 1 0.2717 1.2708 1.5782 45 1 0.6811 0.4484 3.1027 46 1 -1.6567 1.2934 3.1289 47 1 -0.6610 2.1029 4.3634 48 1 -1.3488 3.2050 1.5998 49 1 -2.0225 3.7646 3.1507 50 1 -2.8523 6.4527 3.8357 51 1 2.1478 4.2938 2.3525 52 1 1.1173 3.4878 1.1458 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000908680198.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:38 Heat of formation + Delta-G solvation = 58.437878 kcal Electronic energy + Delta-G solvation = -32232.399716 eV Core-core repulsion = 28233.805655 eV Total energy + Delta-G solvation = -3998.594061 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.91233 -39.56723 -38.64922 -36.23568 -34.78775 -33.76591 -32.90296 -31.72099 -31.43344 -30.12947 -28.93040 -27.01334 -25.57656 -25.12344 -23.86142 -23.65036 -21.93541 -21.73137 -20.99573 -20.42898 -19.73273 -18.91454 -17.40529 -16.59832 -16.45756 -16.37756 -15.99524 -15.69521 -15.53536 -15.09214 -14.76687 -14.63167 -14.28597 -14.11155 -13.89063 -13.47316 -13.38649 -13.12261 -12.72980 -12.69276 -12.59172 -12.47983 -11.95703 -11.79120 -11.77053 -11.61085 -11.32935 -11.19051 -11.05812 -10.94933 -10.82539 -10.67516 -10.35730 -10.28110 -10.09178 -10.01067 -9.90405 -9.71110 -9.67377 -9.36429 -8.94256 -8.71236 -8.44985 -8.23716 -6.09445 -4.16712 1.64808 1.88987 2.61279 3.05467 3.22969 3.31164 3.33633 3.56400 3.79081 4.11224 4.29930 4.36446 4.40690 4.46025 4.50754 4.67429 4.74236 4.83808 4.89859 5.05089 5.15128 5.19306 5.20919 5.26499 5.32529 5.35884 5.38795 5.51961 5.54002 5.57686 5.72109 5.76020 5.86389 5.87086 5.90913 6.04625 6.09222 6.18024 6.20385 6.25700 6.28505 6.47382 6.49583 6.63894 6.78229 6.87198 6.93839 7.18493 7.29281 7.61418 7.64295 7.90163 8.00343 8.29590 8.86045 9.03283 9.48417 10.96624 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016094 B = 0.002879 C = 0.002734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.363568 B = 9724.746616 C =10239.137154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.191 4.191 3 C 0.124 3.876 4 N -0.494 5.494 5 C 0.170 3.830 6 C 0.006 3.994 7 C -0.144 4.144 8 C 0.063 3.937 9 O -0.381 6.381 10 C 0.064 3.936 11 C -0.146 4.146 12 N -0.284 5.284 13 N -0.275 5.275 14 C 0.367 3.633 15 N -0.443 5.443 16 C 0.047 3.953 17 C -0.118 4.118 18 C -0.112 4.112 19 C 0.057 3.943 20 H 0.041 0.959 21 C -0.519 4.519 22 H 0.054 0.946 23 C 0.066 3.934 24 N -0.885 5.885 25 Si 0.892 3.108 26 H -0.281 1.281 27 H -0.285 1.285 28 H -0.274 1.274 29 C 0.070 3.930 30 H 0.110 0.890 31 H 0.109 0.891 32 H 0.115 0.885 33 H 0.100 0.900 34 H 0.106 0.894 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.073 0.927 38 H 0.050 0.950 39 H 0.097 0.903 40 H 0.050 0.950 41 H 0.098 0.902 42 H 0.075 0.925 43 H 0.088 0.912 44 H 0.053 0.947 45 H 0.062 0.938 46 H 0.055 0.945 47 H 0.066 0.934 48 H 0.031 0.969 49 H 0.097 0.903 50 H 0.262 0.738 51 H 0.068 0.932 52 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.929 -15.370 -12.534 21.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.210 4.210 3 C 0.001 3.999 4 N -0.191 5.191 5 C -0.098 4.098 6 C -0.015 4.015 7 C -0.183 4.183 8 C -0.013 4.013 9 O -0.299 6.299 10 C -0.013 4.013 11 C -0.185 4.185 12 N -0.124 5.124 13 N -0.116 5.116 14 C 0.012 3.988 15 N -0.167 5.167 16 C -0.080 4.080 17 C -0.156 4.156 18 C -0.150 4.150 19 C 0.038 3.962 20 H 0.059 0.941 21 C -0.557 4.557 22 H 0.072 0.928 23 C -0.136 4.136 24 N -0.523 5.523 25 Si 0.720 3.280 26 H -0.207 1.207 27 H -0.211 1.211 28 H -0.199 1.199 29 C -0.055 4.055 30 H 0.128 0.872 31 H 0.127 0.873 32 H 0.133 0.867 33 H 0.118 0.882 34 H 0.124 0.876 35 H 0.100 0.900 36 H 0.106 0.894 37 H 0.092 0.908 38 H 0.068 0.932 39 H 0.115 0.885 40 H 0.068 0.932 41 H 0.116 0.884 42 H 0.094 0.906 43 H 0.107 0.893 44 H 0.071 0.929 45 H 0.080 0.920 46 H 0.073 0.927 47 H 0.085 0.915 48 H 0.050 0.950 49 H 0.115 0.885 50 H 0.072 0.928 51 H 0.086 0.914 52 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 9.937 -15.225 -10.686 21.089 hybrid contribution -1.732 0.890 -2.254 2.979 sum 8.205 -14.335 -12.941 20.983 Atomic orbital electron populations 1.24102 0.95587 1.03132 0.95713 1.22995 0.96365 0.97614 1.04005 1.21201 0.92336 0.98030 0.88301 1.47668 1.11577 1.47758 1.12125 1.24401 0.83289 1.04049 0.98025 1.19510 0.95128 0.94952 0.91885 1.22223 1.00895 0.94459 1.00694 1.22585 0.88543 0.93895 0.96318 1.87955 1.31608 1.21971 1.88405 1.22595 0.99833 0.83611 0.95293 1.22245 0.96325 0.98868 1.01062 1.74080 1.23267 1.15398 0.99681 1.74553 0.96652 1.16762 1.23649 1.23596 0.95522 0.99211 0.80431 1.59282 0.97993 1.04533 1.54936 1.22691 0.90765 0.94210 1.00315 1.21715 0.93807 0.98893 1.01144 1.21705 1.03186 0.91990 0.98080 1.18695 0.87475 0.92666 0.97327 0.94075 1.21032 1.11835 1.03467 1.19416 0.92796 1.24909 0.96017 0.97801 0.94869 1.69872 1.16656 1.37983 1.27806 0.86599 0.78450 0.83779 0.79206 1.20730 1.21100 1.19918 1.22595 1.02069 0.85844 0.95035 0.87212 0.87276 0.86703 0.88187 0.87623 0.89966 0.89384 0.90835 0.93208 0.88464 0.93162 0.88383 0.90644 0.89324 0.92948 0.91970 0.92676 0.91499 0.95043 0.88491 0.92840 0.91357 0.95600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 12.30 29.02 0.36 -1.00 16 2 C -0.19 -1.85 9.10 -36.02 -0.33 -2.18 16 3 C 0.12 1.41 5.45 -5.19 -0.03 1.38 16 4 N -0.49 -7.23 2.79 -115.37 -0.32 -7.55 16 5 C 0.17 2.43 6.59 -154.02 -1.01 1.41 16 6 C 0.01 0.06 2.64 -91.59 -0.24 -0.18 16 7 C -0.14 -1.32 5.41 -26.58 -0.14 -1.46 16 8 C 0.06 0.48 6.84 37.21 0.25 0.74 16 9 O -0.38 -3.68 10.77 -35.23 -0.38 -4.06 16 10 C 0.06 0.50 6.84 37.21 0.25 0.76 16 11 C -0.15 -1.40 5.41 -26.59 -0.14 -1.55 16 12 N -0.28 -5.09 12.18 32.99 0.40 -4.69 16 13 N -0.28 -5.60 12.23 30.31 0.37 -5.23 16 14 C 0.37 6.76 6.65 -318.87 -2.12 4.64 16 15 N -0.44 -8.49 4.70 -174.55 -0.82 -9.31 16 16 C 0.05 0.78 4.82 -3.83 -0.02 0.76 16 17 C -0.12 -2.11 6.09 -26.65 -0.16 -2.27 16 18 C -0.11 -2.40 5.02 -26.61 -0.13 -2.53 16 19 C 0.06 1.36 2.26 -91.70 -0.21 1.15 16 20 H 0.04 1.11 8.14 -51.92 -0.42 0.68 16 21 C -0.52 -13.48 8.57 -34.44 -0.30 -13.78 16 22 H 0.05 1.38 7.74 -52.49 -0.41 0.98 16 23 C 0.07 1.75 5.30 -17.82 -0.09 1.65 16 24 N -0.89 -24.14 11.35 55.43 0.63 -23.51 16 25 Si 0.89 20.44 29.54 -169.99 -5.02 15.42 16 26 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 27 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 28 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 29 C 0.07 1.44 4.48 -3.83 -0.02 1.43 16 30 H 0.11 1.11 7.07 -52.49 -0.37 0.74 16 31 H 0.11 0.82 8.06 -52.48 -0.42 0.40 16 32 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 33 H 0.10 0.88 7.23 -51.93 -0.38 0.50 16 34 H 0.11 1.35 4.62 -51.93 -0.24 1.11 16 35 H 0.08 0.67 6.95 -51.93 -0.36 0.31 16 36 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 44 H 0.05 0.76 2.00 -51.93 -0.10 0.66 16 45 H 0.06 1.01 8.10 -51.93 -0.42 0.59 16 46 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 47 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 48 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 49 H 0.10 2.37 6.15 -51.93 -0.32 2.06 16 50 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 51 H 0.07 1.50 8.10 -51.93 -0.42 1.08 16 52 H 0.03 0.50 5.73 -51.93 -0.30 0.20 16 LS Contribution 394.47 15.07 5.94 5.94 Total: -1.00 -30.57 394.47 -11.65 -42.21 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -8.37 Total: 1.80 kcal Atomic # 6 Polarization: -6.96 SS G_CDS: -4.08 Total: -11.04 kcal Atomic # 7 Polarization: -50.55 SS G_CDS: 0.26 Total: -50.29 kcal Atomic # 8 Polarization: -3.68 SS G_CDS: -0.38 Total: -4.06 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -30.57 -11.65 -42.21 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000908680198.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.652 kcal (2) G-P(sol) polarization free energy of solvation -30.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds