Wall clock time and date at job start Wed Apr 1 2020 04:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50702 * 120.00204 * 2 1 4 4 N 1.46500 * 109.46883 * 124.99760 * 3 2 1 5 5 C 1.36738 * 127.13184 * 90.00781 * 4 3 2 6 6 C 1.50694 * 126.35035 * 359.93818 * 5 4 3 7 7 C 1.53176 * 109.54272 * 239.82337 * 6 5 4 8 8 C 1.53107 * 109.15418 * 183.24278 * 7 6 5 9 9 O 1.42903 * 109.49256 * 57.47543 * 8 7 6 10 10 C 1.42900 * 114.09439 * 298.88863 * 9 8 7 11 11 C 1.53098 * 109.41361 * 61.15557 * 10 9 8 12 12 N 1.30294 * 107.30236 * 179.97438 * 5 4 3 13 13 N 1.28527 * 110.05908 * 0.02562 * 12 5 4 14 14 C 1.31225 * 109.85410 * 359.73623 * 13 12 5 15 15 N 1.38581 * 126.47450 * 180.25891 * 14 13 12 16 16 C 1.46841 * 111.00204 * 236.22203 * 15 14 13 17 17 C 1.53043 * 109.52548 * 174.15972 * 16 15 14 18 18 C 1.53123 * 109.27441 * 59.17730 * 17 16 15 19 19 C 1.53116 * 109.16366 * 302.34635 * 18 17 16 20 20 H 1.09007 * 109.49801 * 297.72076 * 19 18 17 21 21 C 1.50689 * 109.50576 * 177.63795 * 19 18 17 22 22 H 1.08001 * 120.00046 * 240.00412 * 21 19 18 23 23 C 1.37887 * 120.00142 * 59.99626 * 21 19 18 24 24 N 1.31509 * 119.99490 * 0.02562 * 23 21 19 25 25 Si 1.86795 * 120.00060 * 180.02562 * 23 21 19 26 26 H 1.48507 * 109.47034 * 90.00163 * 25 23 21 27 27 H 1.48493 * 109.47185 * 210.00192 * 25 23 21 28 28 H 1.48503 * 109.47102 * 330.00422 * 25 23 21 29 29 C 1.46846 * 110.99986 * 112.01105 * 15 14 13 30 30 H 1.08002 * 120.00352 * 0.02562 * 1 2 3 31 31 H 1.08005 * 119.99880 * 179.72197 * 1 2 3 32 32 H 1.08002 * 120.00350 * 180.02562 * 2 1 3 33 33 H 1.08998 * 109.47600 * 245.00508 * 3 2 1 34 34 H 1.09004 * 109.46937 * 5.00335 * 3 2 1 35 35 H 1.08996 * 109.54504 * 0.02562 * 6 5 4 36 36 H 1.09001 * 109.52554 * 303.05716 * 7 6 5 37 37 H 1.08992 * 109.52221 * 63.25135 * 7 6 5 38 38 H 1.09006 * 109.40680 * 297.48942 * 8 7 6 39 39 H 1.09000 * 109.48330 * 177.50488 * 8 7 6 40 40 H 1.09004 * 109.48165 * 301.17258 * 10 9 8 41 41 H 1.09004 * 109.48022 * 181.13944 * 10 9 8 42 42 H 1.09005 * 109.51985 * 182.48460 * 11 10 9 43 43 H 1.08997 * 109.52214 * 62.29960 * 11 10 9 44 44 H 1.09004 * 109.46287 * 294.17604 * 16 15 14 45 45 H 1.09005 * 109.46416 * 54.14452 * 16 15 14 46 46 H 1.09000 * 109.50388 * 179.11844 * 17 16 15 47 47 H 1.08995 * 109.49942 * 299.23685 * 17 16 15 48 48 H 1.09000 * 109.52294 * 62.25756 * 18 17 16 49 49 H 1.09005 * 109.51912 * 182.44140 * 18 17 16 50 50 H 0.97003 * 119.99523 * 179.97438 * 24 23 21 51 51 H 1.09005 * 109.46226 * 305.85488 * 29 15 14 52 52 H 1.08996 * 109.46558 * 65.82326 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3318 1.1315 5 6 4.2912 0.9005 1.1437 6 6 5.0437 0.2999 -0.0155 7 6 5.5063 -1.1136 0.3511 8 6 6.3384 -1.6844 -0.8005 9 8 7.4445 -0.8189 -1.0643 10 6 7.0701 0.5026 -1.4587 11 6 6.2694 1.1621 -0.3327 12 7 4.7560 1.1043 2.3437 13 7 3.8474 1.6306 3.0849 14 6 2.7467 1.7971 2.3902 15 7 1.5572 2.3403 2.8490 16 6 0.4405 1.4086 2.6463 17 6 -0.8244 1.9778 3.2931 18 6 -1.1471 3.3356 2.6630 19 6 0.0506 4.2718 2.8455 20 1 0.2277 4.4330 3.9089 21 6 -0.2362 5.5918 2.1775 22 1 0.4033 5.9445 1.3818 23 6 -1.3151 6.3492 2.5819 24 7 -2.0935 5.9197 3.5509 25 14 -1.6710 7.9850 1.7532 26 1 -2.5745 7.7670 0.5950 27 1 -2.3228 8.9002 2.7241 28 1 -0.3985 8.5882 1.2817 29 6 1.2900 3.6360 2.2117 30 1 -0.5401 0.9353 -0.0004 31 1 -0.5400 -0.9354 -0.0045 32 1 1.8500 -0.9353 -0.0004 33 1 2.6212 1.4027 -0.9314 34 1 1.3585 2.1317 0.0896 35 1 4.3933 0.2560 -0.8890 36 1 6.1152 -1.0749 1.2543 37 1 4.6371 -1.7481 0.5235 38 1 5.7168 -1.7621 -1.6926 39 1 6.7074 -2.6729 -0.5273 40 1 6.4581 0.4535 -2.3594 41 1 7.9663 1.0896 -1.6596 42 1 5.9452 2.1537 -0.6488 43 1 6.8941 1.2483 0.5563 44 1 0.2717 1.2708 1.5782 45 1 0.6811 0.4484 3.1027 46 1 -1.6567 1.2934 3.1289 47 1 -0.6610 2.1029 4.3634 48 1 -1.3488 3.2050 1.5998 49 1 -2.0225 3.7646 3.1507 50 1 -2.8523 6.4527 3.8357 51 1 2.1478 4.2938 2.3525 52 1 1.1173 3.4878 1.1458 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000908680198.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:37 Heat of formation + Delta-G solvation = 42.241937 kcal Electronic energy + Delta-G solvation = -32233.102025 eV Core-core repulsion = 28233.805655 eV Total energy + Delta-G solvation = -3999.296370 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -44.17433 -40.39087 -40.01966 -37.28797 -35.96134 -35.15757 -34.11460 -33.20868 -32.07610 -31.86541 -30.19658 -28.00133 -27.02084 -26.45559 -25.16951 -24.52205 -23.39498 -22.88353 -22.25701 -21.31215 -20.62450 -20.51028 -18.81108 -18.13348 -17.34586 -17.26699 -17.16297 -16.84185 -16.60242 -16.37699 -15.98365 -15.68201 -15.35568 -15.30163 -14.90802 -14.69544 -14.53587 -14.49943 -14.23738 -14.12987 -13.66233 -13.38844 -13.32134 -12.87387 -12.78155 -12.68948 -12.65768 -12.59189 -12.45833 -12.29752 -11.97884 -11.92690 -11.85548 -11.59923 -11.46238 -11.30009 -11.15918 -11.09388 -10.79997 -10.56643 -10.53089 -10.42794 -10.04625 -9.68270 -8.11323 -6.25947 0.61359 0.87184 1.40514 1.43201 1.51970 1.58379 1.73959 2.34075 2.49181 2.97299 3.16693 3.20138 3.39958 3.60891 3.66278 3.76310 3.87036 3.94786 4.01134 4.02065 4.07194 4.15107 4.26696 4.31445 4.37913 4.42319 4.44423 4.50549 4.60579 4.63066 4.70121 4.73314 4.77513 4.79610 4.85672 4.85799 4.89845 4.95961 5.04057 5.09035 5.11954 5.26315 5.31738 5.40423 5.46657 5.51606 5.57978 5.60679 5.74275 5.96113 6.11389 6.27273 6.29346 6.32525 6.83943 7.42419 7.73154 8.93552 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016094 B = 0.002879 C = 0.002734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.363568 B = 9724.746616 C =10239.137154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.194 4.194 3 C 0.115 3.885 4 N -0.487 5.487 5 C 0.194 3.806 6 C 0.006 3.994 7 C -0.139 4.139 8 C 0.065 3.935 9 O -0.402 6.402 10 C 0.066 3.934 11 C -0.144 4.144 12 N -0.321 5.321 13 N -0.319 5.319 14 C 0.353 3.647 15 N -0.462 5.462 16 C 0.053 3.947 17 C -0.110 4.110 18 C -0.101 4.101 19 C 0.057 3.943 20 H -0.006 1.006 21 C -0.537 4.537 22 H 0.052 0.948 23 C 0.020 3.980 24 N -0.911 5.911 25 Si 0.953 3.047 26 H -0.270 1.270 27 H -0.286 1.286 28 H -0.272 1.272 29 C 0.089 3.911 30 H 0.100 0.900 31 H 0.131 0.869 32 H 0.131 0.869 33 H 0.133 0.867 34 H 0.090 0.910 35 H 0.115 0.885 36 H 0.060 0.940 37 H 0.083 0.917 38 H 0.075 0.925 39 H 0.108 0.892 40 H 0.075 0.925 41 H 0.106 0.894 42 H 0.077 0.923 43 H 0.060 0.940 44 H 0.078 0.922 45 H 0.070 0.930 46 H 0.088 0.912 47 H 0.046 0.954 48 H 0.040 0.960 49 H 0.065 0.935 50 H 0.262 0.738 51 H 0.044 0.956 52 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.699 -17.206 -16.048 25.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.213 4.213 3 C -0.006 4.006 4 N -0.183 5.183 5 C -0.075 4.075 6 C -0.014 4.014 7 C -0.178 4.178 8 C -0.011 4.011 9 O -0.321 6.321 10 C -0.010 4.010 11 C -0.183 4.183 12 N -0.161 5.161 13 N -0.160 5.160 14 C -0.003 4.003 15 N -0.186 5.186 16 C -0.072 4.072 17 C -0.148 4.148 18 C -0.139 4.139 19 C 0.038 3.962 20 H 0.013 0.987 21 C -0.575 4.575 22 H 0.071 0.929 23 C -0.180 4.180 24 N -0.550 5.550 25 Si 0.779 3.221 26 H -0.195 1.195 27 H -0.212 1.212 28 H -0.197 1.197 29 C -0.037 4.037 30 H 0.118 0.882 31 H 0.149 0.851 32 H 0.148 0.852 33 H 0.150 0.850 34 H 0.108 0.892 35 H 0.133 0.867 36 H 0.078 0.922 37 H 0.102 0.898 38 H 0.093 0.907 39 H 0.126 0.874 40 H 0.093 0.907 41 H 0.124 0.876 42 H 0.096 0.904 43 H 0.079 0.921 44 H 0.096 0.904 45 H 0.088 0.912 46 H 0.106 0.894 47 H 0.065 0.935 48 H 0.059 0.941 49 H 0.084 0.916 50 H 0.071 0.929 51 H 0.062 0.938 52 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 9.709 -17.077 -14.218 24.250 hybrid contribution -1.614 1.445 -1.164 2.460 sum 8.095 -15.632 -15.381 23.377 Atomic orbital electron populations 1.24255 0.95524 1.03748 0.94712 1.22994 0.96462 0.97127 1.04688 1.21515 0.92219 0.98645 0.88195 1.47724 1.12126 1.46744 1.11709 1.25215 0.82918 1.01407 0.97961 1.19822 0.95324 0.95171 0.91125 1.22183 1.01135 0.94059 1.00433 1.22707 0.88184 0.93812 0.96447 1.87939 1.32921 1.22737 1.88540 1.22674 1.00357 0.82903 0.95066 1.22215 0.95968 0.99301 1.00804 1.74009 1.23496 1.17184 1.01377 1.74434 0.97805 1.18071 1.25701 1.23253 0.94803 1.00345 0.81913 1.59055 0.99183 1.04494 1.55916 1.22725 0.89082 0.93622 1.01817 1.21624 0.95832 0.97644 0.99666 1.21467 1.00700 0.93252 0.98463 1.18576 0.89965 0.93147 0.94502 0.98741 1.21365 1.11865 1.04758 1.19541 0.92936 1.25652 0.95903 1.00976 0.95433 1.70015 1.16991 1.39117 1.28883 0.85629 0.78303 0.79746 0.78412 1.19529 1.21193 1.19691 1.22185 0.99413 0.86423 0.95677 0.88191 0.85114 0.85157 0.84966 0.89156 0.86689 0.92155 0.89806 0.90674 0.87371 0.90669 0.87573 0.90392 0.92111 0.90400 0.91159 0.89398 0.93518 0.94118 0.91621 0.92882 0.93772 0.93890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 12.30 67.79 0.83 -1.30 16 2 C -0.19 -3.02 9.10 25.65 0.23 -2.79 16 3 C 0.12 2.27 5.45 85.63 0.47 2.74 16 4 N -0.49 -13.53 2.79 -518.91 -1.45 -14.98 16 5 C 0.19 5.31 6.59 137.64 0.91 6.21 16 6 C 0.01 0.11 2.64 -11.42 -0.03 0.08 16 7 C -0.14 -2.23 5.41 30.69 0.17 -2.06 16 8 C 0.06 0.78 6.84 72.02 0.49 1.27 16 9 O -0.40 -6.75 10.77 -148.98 -1.60 -8.36 16 10 C 0.07 0.86 6.84 72.01 0.49 1.35 16 11 C -0.14 -2.52 5.41 30.69 0.17 -2.35 16 12 N -0.32 -11.72 12.18 -49.54 -0.60 -12.32 16 13 N -0.32 -13.37 12.23 -58.00 -0.71 -14.08 16 14 C 0.35 13.07 6.65 260.11 1.73 14.80 16 15 N -0.46 -17.98 4.70 -706.14 -3.32 -21.30 16 16 C 0.05 1.72 4.82 86.33 0.42 2.14 16 17 C -0.11 -3.90 6.09 30.65 0.19 -3.71 16 18 C -0.10 -4.40 5.02 30.67 0.15 -4.24 16 19 C 0.06 2.81 2.26 -11.49 -0.03 2.78 16 20 H -0.01 -0.32 8.14 -2.38 -0.02 -0.34 16 21 C -0.54 -28.58 8.57 25.60 0.22 -28.36 16 22 H 0.05 2.74 7.74 -2.91 -0.02 2.72 16 23 C 0.02 1.07 5.30 84.66 0.45 1.52 16 24 N -0.91 -51.06 11.35 21.45 0.24 -50.82 16 25 Si 0.95 42.20 29.54 68.60 2.03 44.23 16 26 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 27 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 28 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 29 C 0.09 3.77 4.48 86.33 0.39 4.16 16 30 H 0.10 1.71 7.07 -2.91 -0.02 1.69 16 31 H 0.13 1.39 8.06 -2.91 -0.02 1.37 16 32 H 0.13 1.70 8.06 -2.91 -0.02 1.68 16 33 H 0.13 1.74 7.23 -2.39 -0.02 1.72 16 34 H 0.09 2.10 4.62 -2.38 -0.01 2.09 16 35 H 0.12 1.31 6.95 -2.39 -0.02 1.29 16 36 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.08 0.56 8.14 -2.38 -0.02 0.54 16 39 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 41 H 0.11 1.19 8.14 -2.38 -0.02 1.17 16 42 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 43 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.08 2.10 2.00 -2.38 0.00 2.10 16 45 H 0.07 2.18 8.10 -2.38 -0.02 2.16 16 46 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 47 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 48 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 49 H 0.07 3.30 6.15 -2.38 -0.01 3.29 16 50 H 0.26 13.99 8.31 -92.71 -0.77 13.22 16 51 H 0.04 2.03 8.10 -2.38 -0.02 2.01 16 52 H 0.04 1.64 5.73 -2.39 -0.01 1.63 16 Total: -1.00 -70.83 394.47 2.74 -68.09 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: 0.91 Total: 17.31 kcal Atomic # 6 Polarization: -15.01 SS G_CDS: 7.24 Total: -7.77 kcal Atomic # 7 Polarization: -107.66 SS G_CDS: -5.84 Total: -113.50 kcal Atomic # 8 Polarization: -6.75 SS G_CDS: -1.60 Total: -8.36 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.23 kcal Total: -70.83 2.74 -68.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000908680198.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.329 kcal (2) G-P(sol) polarization free energy of solvation -70.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds